Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0630700 | OGI:04094470 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:32083281-32083982 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTCTTTCTTCTCTTCGTTTCAATCTAGCGACCGAACGCGAGAAGTCGAGAAGAGAAGCGGCAGCGACACCGGCGCCGCCCACCACCACTGCATCGCCGCCGCGGCGTGCCTCACCGGTCCCGCCCCCCAACAGCTGCGCCGCCGCCTCTCCCCGGTGAGTCTCCTCCCCAGCCGCCGCCTATCCTCAGCGAAACCCTAGGCACCGAGCCGGCCGCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGTGAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGCTCGTCGCAGCAGGGGGCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTACTTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCCGCCGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGGTTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAGCAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTCTTCTCTGAATTCATAGTGGTTTTTTTGCCTCCTGTG
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| CDS seq | ATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTACTTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCCGCCGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGGTTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAGCAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACTGAGGACCCCTGA |
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| Protein seq | MGRIHIVSPESKLECGEIYFLIPAASVPDAKRRTSTGGAAGHGHHVRSKSEGNAAVADWLGSQCSASPETTRMMRVQKQHHHQHRRRMSTGSHASPWQPHLSCITEDP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0630700 | OsNip_04t0630700-01 | Chr04 | 32083281 | 32083982 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTACTTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCCGCCGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGGTTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAGCAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACTGAGGACCCCTGA
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| Protein seq | MGRIHIVSPESKLECGEIYFLIPAASVPDAKRRTSTGGAAGHGHHVRSKSEGNAAVADWLGSQCSASPETTRMMRVQKQHHHQHRRRMSTGSHASPWQPHLSCITEDP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0165600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g07150 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0630700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027700 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004430 | SBH | 0.0 | 2.674037 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028180 | SBH | 0.289461 | 2.210910 | 5.148801 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027980 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0059800 | SBH | 0.0615065 | 0.341774 | 0.2525525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026910 | SBH | 0.000000 | 0.334868 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0060700 | SBH | 0.099487 | 0 | 0.2728795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004340 | SBH | 0.0 | 0.198220 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004560 | SBH | 0.0 | 10.300566 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004530 | SBH | 0.0 | 0.763666 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027820 | SBH | 0.178740 | 1.971581 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027110 | SBH | 0.222890 | 1.356354 | 3.818587 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027050 | RBH | 0.0 | 0.0 | 0.000000 |
