Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0600500 | OGI:04089880 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:30297864-30305606 | ||||||||
| Gene Symbol | BRXL3, OsBRXL3 | ||||||||||
| DNA seq | AAAGGATTTGACAAGCTTACGAATAAATTGAACCAACGAATATGAAGATTTGCGTTACAAGAAAAATTTAATGCAGCAACCAGGTGAGAACACATCACCACGTTATATATGTTGTCTACACAAAGAGGGACACAGCATCAAAGATACATTTCACTCCTATCCCTACCAACTTTCACTATTTTGTTTTACCTTGCACTGTAACAAGGATAACCGATCAGCAACTAACAGCGGTATCACCTCTCCCTAATCTATCTCCCTTTTTCTCTTGATCTGCTCGACTCATGCATAGATGCATGCCTTGTTACAGATACTGTGCTTGTATTCTGTCTCTGTTGTGCTCCCACCAAACCTTCGCCCTGTCCTCACCAAACCTCTCGCGGCTGCAGAAGCAGAGAATCAATTGAGTACGATTAAGCATGGATCAATCAGAAAGTAGTCCCTAGGCGAGTATATACATGAAATTCTGGTTAGATTTGAAAGATTTGTGTTGGTGACATGGTAAACCTAAGATGTTTTGGCTATCCGTGCGTGATTAGTGTATACCTGAACCGGATGCGGCGGAGCTCGCGGGTGCCGTCGCCGAGCTCGCGGATAGTGAGGCAGACGCCCGGCTCGTCCTGCTCGATCCACTCGGTCGCCTCCATGTCGCTCGCGTTGCTGATGGACACGGAGGCCTCGTCGCGGGACGAGGTGGTCCCCCGCGACGGGTCGTACAACGATGGGACGCCGCCGCCCGCCGCGGACGGGCCGGCCGCAGCGGAGTTGAGCATGTTGAAGTGGTGCGCCCACACGTGGTCGGACGGGTCGGGCACTGCCACCGATGGGTAGCACGCCGCTCTTGTGGAAGCCGCCGCCGCGGCGTAATTAGACGCCGAAGCCGCCATCGCCTTGCACGACATGCTCCTTGCGATCGGCTCTTTGGCCAGCGACGACGACGTCGCCGGCGTCACGACCGGACTCTCCCGGGTCGATCCGCCCCTGGAGCAGAACGATGATTCTCTCTGCATTCATGCACGGTCCAGATTTTTCAGTGAGTTGCATTATTGATCATGCAGATGAAAACAACGTGATGATTTCGAAGTAGCATAGAATGCCCGTGAAATCTTTGAAGGGCGTAGTACCGACCAGAATAGAGTCGTCGACGGAGGACGTGGGAGTGGACACGCCTTGCTGCCGGCCGCTGAACGTCTGCACGTTGTACAGCTCGACGATGCGGTCGTAGTTCTCGCCCCACCAACGCTGCGCCTCCCACTTGTTAAAAATCTCTCGGCTACACACACCAATACGCACGTGCGTGAGAGTTAACTCTGGACAAATCGCTCGCACACAATACGTGCAGAGAATACAATCAACCGTGGAAATGGAGCAGATATGATCAGTGTCAGAACCTGAACCGGATGCGCTTGAGGTCGTTGCCACCGCCGGGGAGCGTGACGAAGGTGATCTGGACGCCGGGCTCCACCTGCGCCGTCCACTCCCTCGGCACGGCATCCTCCACGACGGTGACGTCGTCGGCGCCGGCCTCCTCCTCGATGCTCTGTATCCACGTCGTGCCGCCGGGGCTCCTGCCGGCATCCTGCTGCCACCCTCGGTTGCTCTTGCTCCTGGTCATGTCCCATGTCGCCATCGACGTCGACGCGGCCCGGACGGGCGGCGGCGGCGCCGCTCTCGTGTACATGTAGGCCTCACCTCCAGGCCTGGTCGTCGTCATGAACGCGGAGTCATCGATGAAGCCCGGGTACGGACGGCGGTAGCTCCTGCTCCTGAACGAAGGGCTACCGGCCGTCGCCGCCTTGTAGTGCTGATGCTTGTTGGAGCCGGAGAACTTGAGCACCATGTCCTTGAGCTGGAGACAACACATTGCATCGTAGGAGCCTAGTTAGCTACCACTCAGTCACGCGAGAGTCACTTCGCGAGTGTTATGTGCATCAGCTCTCACTGGAATTACTGGCATAAGTAGCTATCACATCGTATAATATCTGTGATACATTTACATGTGTCAATACTTAGCTTGCTTGGATCAAAAGTAAATAGTTTTTTAATCATGAACATCCATAAACATGTGTATCCATATGTGTGACCTTTAAATTAGGGAAGAGTACCGAGAATGATGCCTGCTGACCGATGACCTCATATGACAAACAGGTTTAAATCAAAAGTGGCCACTGGCTGCTAGCTAGGTCACAAAAAAAAAAAAACTAGTAGTAACACACAAATATACTTGGTACAAATTAAGGACCACACTAACTGGCTAGTGACACTGCACACGACACAGGAGGGAAATCTTTACCCTTTTGTCTGAATCAAGGAACCGTGGCATGCATGCCTCATGGCTGCATATCTATCGCAGCCTAAGCTCAAAGCAACATAGTAACCGGTGCGGGCGATAATGACAGCTCGTCGCGCGCAAAGGCGCGCGCGGCCCGGCCGCTCGCTGGCTCGCTCGATCGCAGCACATGCAGCATGACCCCTCCACCGCATGGATGGCATGCATGCACGCATGATGCGTTGCGTGCGCCGTGCGCGCTCGCTTAAAAAGACACGAGACGCGAGCCCGCAGATGCAAGACGCGAGCCATACGCGAGACGAGCCGCGCGCGCGTTTGCGTGGCCCGCGGCCGGCGGCCGGCAGGTGCAGGGGCCCAGGCTGGGCCTAATTAATCCGTGAGTGTATAGCTCGCGTCGCGTGCCAATGCACCGTGGCCCGATTCGTATCCGGCTTTATTCCATCTCCATTGCAGCAAGCAAGGCAGATCCTAGTTTTAGACTTTGTGTTTTGTTCGTGGCTAACTTTGGCATATTCCTAACCTTAGGTAAGGCATATGGTCAACAGAATACTGACGACACCAATGACCAAGGTAGATAAGGAATCAAATATTTTGATGTTGGACTATGCGGTTGGAAATATAATCTGACACAACGAACGAACCAAAGACCACCTAAGAAACTAGGGCGGAGATAAATCTAGGACAATTACGGCCTGAACCTTTGGTTTTTGTCTCCTTATTAATCCTTTGTAAATCCATTCAAATATCATGAGAATTTTGAAGATCGAACAGTTATATTGGTTAAAATTCTTGGCTCCTTCTCTGTAAGAAACAACGGCATGCTTAAGGGCTTGTTTCATATTGATGCCATTTCAAATCGTATCTTTTTTCTATAAAGCTGTCAAATATATATATCCATTTAGTTTCTTACTAAACTCTGATAAATAAATAAGAAATCTTGCCAAAGGCAATATTGTCAACTTGCTAAAATTTTAGCGATGCTAAAATTTAGTACCACCTCCGTTTTTTAATAGATGACGCCATTAACTTTTTCTTACATGTTTGACCATTCGTCTTATTCAAAAAAATTACGTAATTATAATTTATTTTGTTATGAGTTGTTTTATCACTCATATTACTTTAAATTTGATTTATATCTTATATATTTGCATAAAATTTTTGAATAAGACGAATAGTCAAACATGTGAGAAAAAATCAACGGCGTCATCTATTAAAAAACAGAGGTAGTAAGATTTATTTGATTACAATCTGAATAGGCCTTGAGACGTGCCAACCCAAGACATGTATTCAACCAAACACCCCCTTAGAAACACCACCAAAGCATGCCTTTCTACAAGGGAAAAAGGGTGGACACCAGCCAACCATCAGGCAGGCAGCCACAGGGGCACTTTGTATCTACCTTATGGGCATCTCTTTAGGGCAAAGGGAATGAACGAATGAGAAAAGAAGGGGAATGTGTGTGCATAGCATGGGAACAAAATCAAGCCACGATGTGGTTGGCAAAGTGGCAAACTGTCCAAAGTTTAGGAGTGGTGGCGCCCGGCCGGCCGGCTGGGATGGGGATCCAAGCAGCAAAGACATTAAAGTGGCCTTAATTCTTTCTCCCACCACATCTACTCATCCTCCCTTGACCAGCTTTGTCGAGGAATGTCGCCAGAATTTATCGACGTTGAGTGCTAAAGGGAGGCGATTGAACCACTGTCATTCACATCGTACTTTTGGGCATGGCTCAACATCAACATTTCCTAGCTACTGTAGTCAGCAGTTGTATCACTGTTGTAAAGTTGGACGACGTAGGTATAGGTTTTTCAGAGAAAACACATAGTCTTAGCTAGGGACATCATGCTGATCTCTGCTCGTTGATTTGTACTACCTCTGACAACATACCAAACTAGTTTAATTGCCTATGATCAGTACTAAAAATGGCTTTTCTTAAAACGTAAAATGTCATAAAGTTGCATACTTGTATATGCAGAAATGAACAATATCAATCCATTGTAACTTGTGAGAAGGTACGGCTAGAAATTAAAAGCATTTTGGAGTATGTTTGCATAGGACGATCGAGAGTTAGATGACCTGAGTATAGGTACTCAATTGATTGCGTCTGTGTCTGCATTGCGTGGGGCGGCGGAACTAGTAATCCTATGATTCCGTAAAGGGGCTAAGGGCCAAAATAAATGGCAGTCATGGCTACAGAAACTTGCTCGTTTAATAGTACCTAGTACGTACACGGCCACCGTACCAGGAAATGGCGACGGACGCTTTGCTAGTAGTTTGTCTCTATCACACGCACATTACTTCGTCAGTTTTCAACCACCGTGACTTTGGACTCTTTGCCAACGTACACCGGCTGATCGATCTGCGGGTGACCTAACCAATCGGACGAACGAATTCAATTCAGTTGCAAGGTTGCAACACAGCGCATACGGTCCCAGATCGGCCATGCTTGGGCAATTCCTGGGCATTGCTGGTAAGTAGAGTACTGTACTCTCTCTCTCTCTCTCTCTCTCTTTTTTGTGACATGGGTAAGCAGAGACAGAGCACTAGTGGTATACTACTGTACAGTCTCAGTGGTCGTCCATCTTGGCTGCCACCCCTGGTCTCCCCCTCGTCTATTAACTGCTGCTACTACTATCTCTTCCTCATACAGACAGAGCTAGTAGCATGTAGTAGTACACTCTATATACTGCAGTACTGATGGCAAAGTAGCAGGTGTAAATTCGATCCAGGAGTAGCATGTACGAGAAGAAGTTTAGATCAAGACGAAGAAGAAGAAGGGACAGACGGGTACCTGTGAGGTGAGGGACTTGACGGCATCTCTGCCGTGAGGCGTGGCCGCGCCACGGGACCCGTCCTCCCCGCCTTCCTTGGAGGAGCACGCGATGCATGCCAGCATCTTCTCTGACCCCCTCTCCCTATCTGCCTCCCTCTCCTCGATCGACGACGACGAGACGGATCAATCAGTAGTCAATCGCTCCCCCCACAATCTCACCTTGTGTATCGAACTGCAAAAGTGTGTGCATTAGCGTTACATATATAGTACTACCACAGTACGGCTATCTATCAGAATTGAAGCCGCTGTAACGAAAGATCAAGTTTGATCAGACATGCCGTCATGTAGACACTACAGCCCACGGCTACAGTTGCATGCATGCATGTGATAGAATGTCTATCCATGAGATGGTCAAACTTTGTCGTTGTTCGCATGGCAATAGTACACTTAGTACATGTATAGTACACATTTCCATGATAATTAAACGAGTGCGAGATTTCGTGTATCCACGCACACGTATGTACGACCAAAATAAATACACGCCGAAAGTACGTACTCCTATCAAGTATCAACAGTGACACTATCAGTCTAGTATCCTCTAGCCATAGCCACAATCTACAATGTACTGTAATAACGTAAAGCGGTTTCCAAGCCGGTGTGTGACGCCATTCTAGTACCACACACCATTTGGACCAGACGTGCCATGCCATCCTTGCATCTCACATGTAAGCACGCGAACACGACATCCGGTACACTATGCGAGCACAGAGCTATCCGGCCGGTCCGTGACCACGCACACGTGCGCATGCGTGTGCGTCGGAGGAGCTGTCCTTCCGGCTCGTTGAGCAACAGAGAGCAATGCAAGCATGCGTATGTACGAGAGATAGCTATAGCTAGGGACTCTGGTCTCTGGAGCTTCAATTCGCCACCGGCGTCAAAACGGGGCAAGCTGGCTGGCTAGCTGGTGCAGTGGAGCACTGGAGCCTGCAGCGACAAAAAAGTATAGCACCAGCATAACAAAGCAAGCAAGACCCATGCCAATGGCAGCATCACAGTCGTTCACAGCTACTCCTGCATGCATGGCATGCATTCGCAGGCTGCTCTAACACAGTGGAAGAAACGCTACGCGGGGCAAAGCAGATCGATCGACGGGCACAGGCACAGAGATTCTTTAATCGCCATGCCACATGACACACACACATATACTACTAGTAAATCAAAACTGAAAAGCAGGTTGTAGTAGTAAAATACGGTCAGCTACATTGCGGCAGGGAAGCTTCTGATGTTTACGCGCACATGGAAATTTATTAACCACCAGTGTGCTATGGCTAGCTAGCTCCGCCCGTTTGTGTATGTGTTGTGCACAGTGTTCATGCAGATGAGGCGCAGCTACCCACGCGAGGTAGGCAGGGGCGTATGGGGAAGACTCCAAACGACACCAACAGCAGTAGCTCGGTGGACGAGGCAGGGAGCCGCTCAGATGTGTATCAGCTACAGTCACTGCAGCTGGGGCCCCACGCCCTCCCCCAGATCAACGTACTGCCTGGACTTTATTTTTTTTTTCCTCCTGCTCCATCCCTACCGAGAAAAATATGGGCCCCGGCTAAAGCGACCGGCTATCGAGTGACTGCATTGTGGAGCCCGGTAGGGTTTTTGCTGATTATCTTTTGCGCTTTTTTAATAGAAACACGACGTGATAACCTTAAACACGGTATTGTGTGTGTTTTCTTTTGGCCGGTGGTAGTAATTTCTTTTGTACAGTAGTAGTATCAGCTAGTAATTAATTAATGTTGCTGTAGAGGGAGAGAGAAATGAGAGGCACAGTGAGAGTGATGAGATGATGCTTACAGGTAACTGACGGCCCCCAGATAGCTACGTTAGCCACAGCTCTCTCTCTCCTCCGAGTTTGCTCGCCGTGTAAACAGTGTGCGTACCCAAACCACCTACGCGCGCGCTGACCGGGTTGCTCCGCCTCCTCTTCCTCTCTCTCCGGCGCCTGAAATGATGCAGACAAAAATGTGCCAAAATAAATATGTATACGCCTAGAAGCGAGAGCGGGATGCAAGGAGAAACGGCCTTTTATTTTTGACACCAAGATAAACGGACTTTGACTTTCTGGTGAACAGAACAGGGTAAGAAACGGCATGCAAGACGAGAAAACAAAACATAGAAAAAGTGTAACTCAACACACACACACACAAAAAAAAAGCAAAGCAAAGATAAGACGAAGCATCAAGCAAGCTGGTTGCGTGCGTCGCCGTCACCACCATTACCTTCTCCTCCACGTCGCCGGTGAGCGAACGAGCGCAATTTGCAGCCCGCCGGTCGGCTTCACCTTCGCCGCCCTTTCGGTTTCGAGCTCTGCCTCTGAATCGACTCAGAAGCCTTTGGAGATAGCACAGAGAGAAAGGCCTCCCTTGTCTGGTCGAGGAGTGGATGCGGCTGCGTCAATGGCGCCAAACACAGCGGCGGCAAAGATATCAGAAGCTACGCAGCGACGCTGTCGCCGCACAGAAACAATCTGGGACTGAGTGGGAGATTCCTCTCGCAGTCGCAGGAGAGAAGAGCCACGAAGCGAGAGAGAGAGATCGAGGTGGGGAGGGAGAGAACACTGCGGGCGTCGCGCTGGGCCGTCGGATCCTTCCCCCATATACGACGAGAGGGCGCCGAGTGCACAGGCAGT
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| CDS seq | ATGCTGGCATGCATCGCGTGCTCCTCCAAGGAAGGCGGGGAGGACGGGTCCCGTGGCGCGGCCACGCCTCACGGCAGAGATGCCGTCAAGTCCCTCACCTCACAGCTCAAGGACATGGTGCTCAAGTTCTCCGGCTCCAACAAGCATCAGCACTACAAGGCGGCGACGGCCGGTAGCCCTTCGTTCAGGAGCAGGAGCTACCGCCGTCCGTACCCGGGCTTCATCGATGACTCCGCGTTCATGACGACGACCAGGCCTGGAGGTGAGGCCTACATGTACACGAGAGCGGCGCCGCCGCCGCCCGTCCGGGCCGCGTCGACGTCGATGGCGACATGGGACATGACCAGGAGCAAGAGCAACCGAGGGTGGCAGCAGGATGCCGGCAGGAGCCCCGGCGGCACGACGTGGATACAGAGCATCGAGGAGGAGGCCGGCGCCGACGACGTCACCGTCGTGGAGGATGCCGTGCCGAGGGAGTGGACGGCGCAGGTGGAGCCCGGCGTCCAGATCACCTTCGTCACGCTCCCCGGCGGTGGCAACGACCTCAAGCGCATCCGGTTCAGCCGCGAGAGGTTTGGTGAGGACAGGGCGAAGGTTTGGTGGGAGCACAACAGAGACAGAATACAAGCACAGTATCTGTAA
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| Protein seq | MLACIACSSKEGGEDGSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAGSPSFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL |
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| Function | Putative protein Brevis radix-like 3 [UniProtKB/Swiss-Prot:Q7XPT0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0600500 | OsNip_04t0600500-01 | Chr04 | 30297864 | 30305606 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTGGCATGCATCGCGTGCTCCTCCAAGGAAGGCGGGGAGGACGGGTCCCGTGGCGCGGCCACGCCTCACGGCAGAGATGCCGTCAAGTCCCTCACCTCACAGCTCAAGGACATGGTGCTCAAGTTCTCCGGCTCCAACAAGCATCAGCACTACAAGGCGGCGACGGCCGGTAGCCCTTCGTTCAGGAGCAGGAGCTACCGCCGTCCGTACCCGGGCTTCATCGATGACTCCGCGTTCATGACGACGACCAGGCCTGGAGGTGAGGCCTACATGTACACGAGAGCGGCGCCGCCGCCGCCCGTCCGGGCCGCGTCGACGTCGATGGCGACATGGGACATGACCAGGAGCAAGAGCAACCGAGGGTGGCAGCAGGATGCCGGCAGGAGCCCCGGCGGCACGACGTGGATACAGAGCATCGAGGAGGAGGCCGGCGCCGACGACGTCACCGTCGTGGAGGATGCCGTGCCGAGGGAGTGGACGGCGCAGGTGGAGCCCGGCGTCCAGATCACCTTCGTCACGCTCCCCGGCGGTGGCAACGACCTCAAGCGCATCCGGTTCAGCCGCGAGAGGTTTGGTGAGGACAGGGCGAAGGTTTGGTGGGAGCACAACAGAGACAGAATACAAGCACAGTATCTGTAA
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| Protein seq | MLACIACSSKEGGEDGSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAGSPSFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0700700 | RBH | 0.000000 | 0.095587 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51172 | RBH | 0.0 | 0.0 | 0.094776 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0600500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025400 | RBH | 0.0 | 0.0 | 0.292531 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026180 | RBH | 0.0 | 0.0 | 0.281675 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025910 | RBH | 0.0 | 0.0 | 0.595386 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025890 | RBH | 0.0 | 0.0 | 0.479276 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0478800 | RBH | 1.6109435 | 3.4908875 | 5.30377 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024630 | RBH | 0.0 | 0.0 | 0.056847 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0482800 | RBH | 2.028282 | 2.765521 | 7.966311 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024930 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025440 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025620 | RBH | 0.0 | 0.639608 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024850 | RBH | 0.0 | 0.0 | 0.520381 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024740 | RBH | 0.203064 | 0.0 | 0.326116 |
