Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0594100 | OGI:04089090 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:30028840-30030685 | ||||||||
| Gene Symbol | OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63, OsMYB58/63b, MYB58/63b | ||||||||||
| DNA seq | CAATACCAACATCTGCTGGAAACTGATGTTAAAAGTACATAAGTTACATCTCTGGTTAACTCGTACCGGCAATCTTGACTCATTTGTGATTGCATGCACCACTTAATCTGCCCAACATATATAGACATCCCAAAAAAAAAATTAACACCTTTTTTGTGCATCCTAGCCTAACTATCACCTTTTTTACTGCCCAAAAGCATATATGCATCTTTGCATGTGTTGTTCCCATCGATGCCGTCTTCGTATTGGATTGGTATAGTACTCCTTTATACGGTCGTACAATTATACGCGTGTATTGTACTAGAAGTATGTAGCATCACTGGACGATTCGGTCGAGTTGGGTAATCGTATATCTCCTAATCTAGAGATAAAAATGGGTAATTAACGACGAGCTTACACGTAGTAATCCATGGGGTTACTCGTGATGACAGCCGAGGGCTCGTGTCCCTGCCACGTGGCGGCTGCCGTGGGGCCCGCTTGGAAGTAGCACGACACTGGGTCCTCCACAACGGCGGAGGGTGGTGGGCCCGCGCGACCGGGCTGACCTTGTGGGCCCGGGTGGCAGTGGTAGTCGTCCGTGGGCCCCCACAGCCCGAGCTCCTTCTCCAAGTCCTCCAACCACCACTCCTTCCCCTCCTCCTCCTCCAGGCTGGTCGTGGTGGCCACTGTTGCATTGGCCGCCGCCGCCGCCGCCGCATTGCTCCACGCCGGCGGCGGCGCTTCGGTGCACCCGTCGCCGGCGCCGCCGTCCATGATGCTCCATAGCTCCGGCCCGAGGTCCACGATTTCGGGCAGGTCGAGCAGCGGGTCCACGCCTGCACGGGCGCACGACGGGGACGTGGACGAGCACGGCGACGTCGGCGCCGACGCCGACGCCGACGCCGACACCGCGGGGCAGTACGTGTCCGGGACAACGGGGTCAACCAGCATGTCGAAGTCGAAGCAGCAGGGGTCGAGCTCGAGCATGGGGATCTCGATCTTGTCCGTCTCCTCCTCCTCCTCCTTGCTCGTGTTGCTCTGCTCGCCGGCTGAGTCGCCGCTGGAGCAGTTGGTCGTGGTGGTGGTGGACGACGACGGCGATGGGGACGGGACGAGCACGTCGGTGCAGGTCGTCTTCTTCTTGCTCTTGCCCCCACCCTTCTTCTGCTCCGGCGACACCCGCTTCTTGAGGTGCGTGTTCCAGACGTTCTTGATCTCGTTGTCCGTCCTCCCCGGCAGGCACGACGCGATCTTCGACCACCTGAGAAAATTCGATCACAAACTCAGACAATCAGCGCACTGAATCCAACTTATTCAAATCAAGAATCGCACTCGAAATTCCCATGGCTACAGCGGCGTACGTACTTGTTGCCGAGAAGGCCGTGAAGCTTGATGATGGTCTCCTCCTCCTCGGCGGTGAAGTTGCCGCGCTTGAGGTCCGGCCGGAGGTAGTTGATCCACCGGAGTCGGCAGCTCTTCCCGCACCGGAGCAAACCTGCACACGACAAAAAAAAACACCCACGATTCATCAGAACCTGCTCTTTCTTCCACCTCTGCAACGACAACAACAAGCTGCTCTCTCTGCGGCGGCGATGCGTTACCTGCTTGCTTGGGCAGGGCGCGCCAGTTGGCGTGGCCGTACTTCTGAATGTAGGCGACGAGCCTCATGTCCTCCTCCGGCGTCCACGACCCCTTGTTCAGCCCCACCTTGGCGCAGCACGGTGCCCGGCCCTTCCCCATCGTACGTCGTCCGTCCCCGGCCGCCGCCGCCGCCGCCCAGAACAACTCGTGTCTCGGTGTTGCCTCTGCCTCCGTGCTCTGTTGCTGCTGCTGCTGTTGTGTGTGTTCAGGCGTGCGGCCAAGCTGC
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| CDS seq | ATGGGGAAGGGCCGGGCACCGTGCTGCGCCAAGGTGGGGCTGAACAAGGGGTCGTGGACGCCGGAGGAGGACATGAGGCTCGTCGCCTACATTCAGAAGTACGGCCACGCCAACTGGCGCGCCCTGCCCAAGCAAGCAGGTTTGCTCCGGTGCGGGAAGAGCTGCCGACTCCGGTGGATCAACTACCTCCGGCCGGACCTCAAGCGCGGCAACTTCACCGCCGAGGAGGAGGAGACCATCATCAAGCTTCACGGCCTTCTCGGCAACAAGTGGTCGAAGATCGCGTCGTGCCTGCCGGGGAGGACGGACAACGAGATCAAGAACGTCTGGAACACGCACCTCAAGAAGCGGGTGTCGCCGGAGCAGAAGAAGGGTGGGGGCAAGAGCAAGAAGAAGACGACCTGCACCGACGTGCTCGTCCCGTCCCCATCGCCGTCGTCGTCCACCACCACCACGACCAACTGCTCCAGCGGCGACTCAGCCGGCGAGCAGAGCAACACGAGCAAGGAGGAGGAGGAGGAGACGGACAAGATCGAGATCCCCATGCTCGAGCTCGACCCCTGCTGCTTCGACTTCGACATGCTGGTTGACCCCGTTGTCCCGGACACGTACTGCCCCGCGGTGTCGGCGTCGGCGTCGGCGTCGGCGCCGACGTCGCCGTGCTCGTCCACGTCCCCGTCGTGCGCCCGTGCAGGCGTGGACCCGCTGCTCGACCTGCCCGAAATCGTGGACCTCGGGCCGGAGCTATGGAGCATCATGGACGGCGGCGCCGGCGACGGGTGCACCGAAGCGCCGCCGCCGGCGTGGAGCAATGCGGCGGCGGCGGCGGCGGCCAATGCAACAGTGGCCACCACGACCAGCCTGGAGGAGGAGGAGGGGAAGGAGTGGTGGTTGGAGGACTTGGAGAAGGAGCTCGGGCTGTGGGGGCCCACGGACGACTACCACTGCCACCCGGGCCCACAAGGTCAGCCCGGTCGCGCGGGCCCACCACCCTCCGCCGTTGTGGAGGACCCAGTGTCGTGCTACTTCCAAGCGGGCCCCACGGCAGCCGCCACGTGGCAGGGACACGAGCCCTCGGCTGTCATCACGAGTAACCCCATGGATTACTACGTGTAA
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| Protein seq | MGKGRAPCCAKVGLNKGSWTPEEDMRLVAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTAEEEETIIKLHGLLGNKWSKIASCLPGRTDNEIKNVWNTHLKKRVSPEQKKGGGKSKKKTTCTDVLVPSPSPSSSTTTTTNCSSGDSAGEQSNTSKEEEEETDKIEIPMLELDPCCFDFDMLVDPVVPDTYCPAVSASASASAPTSPCSSTSPSCARAGVDPLLDLPEIVDLGPELWSIMDGGAGDGCTEAPPPAWSNAAAAAAANATVATTTSLEEEEGKEWWLEDLEKELGLWGPTDDYHCHPGPQGQPGRAGPPPSAVVEDPVSCYFQAGPTAAATWQGHEPSAVITSNPMDYYV |
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| Function | Myb-related protein Zm1 [UniProtKB/Swiss-Prot:P20024] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0594100 | OsNip_04t0594100-01 | Chr04 | 30028840 | 30030685 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGAAGGGCCGGGCACCGTGCTGCGCCAAGGTGGGGCTGAACAAGGGGTCGTGGACGCCGGAGGAGGACATGAGGCTCGTCGCCTACATTCAGAAGTACGGCCACGCCAACTGGCGCGCCCTGCCCAAGCAAGCAGGTTTGCTCCGGTGCGGGAAGAGCTGCCGACTCCGGTGGATCAACTACCTCCGGCCGGACCTCAAGCGCGGCAACTTCACCGCCGAGGAGGAGGAGACCATCATCAAGCTTCACGGCCTTCTCGGCAACAAGTGGTCGAAGATCGCGTCGTGCCTGCCGGGGAGGACGGACAACGAGATCAAGAACGTCTGGAACACGCACCTCAAGAAGCGGGTGTCGCCGGAGCAGAAGAAGGGTGGGGGCAAGAGCAAGAAGAAGACGACCTGCACCGACGTGCTCGTCCCGTCCCCATCGCCGTCGTCGTCCACCACCACCACGACCAACTGCTCCAGCGGCGACTCAGCCGGCGAGCAGAGCAACACGAGCAAGGAGGAGGAGGAGGAGACGGACAAGATCGAGATCCCCATGCTCGAGCTCGACCCCTGCTGCTTCGACTTCGACATGCTGGTTGACCCCGTTGTCCCGGACACGTACTGCCCCGCGGTGTCGGCGTCGGCGTCGGCGTCGGCGCCGACGTCGCCGTGCTCGTCCACGTCCCCGTCGTGCGCCCGTGCAGGCGTGGACCCGCTGCTCGACCTGCCCGAAATCGTGGACCTCGGGCCGGAGCTATGGAGCATCATGGACGGCGGCGCCGGCGACGGGTGCACCGAAGCGCCGCCGCCGGCGTGGAGCAATGCGGCGGCGGCGGCGGCGGCCAATGCAACAGTGGCCACCACGACCAGCCTGGAGGAGGAGGAGGGGAAGGAGTGGTGGTTGGAGGACTTGGAGAAGGAGCTCGGGCTGTGGGGGCCCACGGACGACTACCACTGCCACCCGGGCCCACAAGGTCAGCCCGGTCGCGCGGGCCCACCACCCTCCGCCGTTGTGGAGGACCCAGTGTCGTGCTACTTCCAAGCGGGCCCCACGGCAGCCGCCACGTGGCAGGGACACGAGCCCTCGGCTGTCATCACGAGTAACCCCATGGATTACTACGTGTAA
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| Protein seq | MGKGRAPCCAKVGLNKGSWTPEEDMRLVAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTAEEEETIIKLHGLLGNKWSKIASCLPGRTDNEIKNVWNTHLKKRVSPEQKKGGGKSKKKTTCTDVLVPSPSPSSSTTTTTNCSSGDSAGEQSNTSKEEEEETDKIEIPMLELDPCCFDFDMLVDPVVPDTYCPAVSASASASAPTSPCSSTSPSCARAGVDPLLDLPEIVDLGPELWSIMDGGAGDGCTEAPPPAWSNAAAAAAANATVATTTSLEEEEGKEWWLEDLEKELGLWGPTDDYHCHPGPQGQPGRAGPPPSAVVEDPVSCYFQAGPTAAATWQGHEPSAVITSNPMDYYV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.304562 | 4.984395 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0695200 | RBH | 0.0 | 0.000000 | 1.956449 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g50770 | RBH | 0.0 | 0.192379 | 1.205006 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0594100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025030 | RBH | 0.0 | 5.854043 | 4.541621 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025780 | RBH | 0.0 | 0.000000 | 0.701850 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025470 | RBH | 0.0 | 10.167069 | 2.228770 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025240 | RBH | 0.0 | 0.124003 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025500 | RBH | 1.103985 | 3.820908 | 9.411974 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0475100 | RBH | 1.12179 | 2.045972 | 0.016388 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024260 | RBH | 0.0 | 0.534992 | 0.355168 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0478500 | RBH | 1.3251285 | 1.912534 | 0.0106465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024560 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024630 | RBH | 0.0 | 17.520342 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025070 | RBH | 0.0 | 0.332027 | 0.474469 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025250 | RBH | 0.0 | 4.905008 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024490 | RBH | 0.0 | 0.000000 | 1.613229 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024350 | RBH | 0.0 | 0.000000 | 9.488981 |
