Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0590366 | OGI:06027190 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:29853141-29854596 | ||||||||
| Gene Symbol | OsFbox230, Os_F0308, - | ||||||||||
| DNA seq | ATGGAGCATCTTGGAAGCTCAAGCATTGTGCGTGGGAGAGGCAAGAACAAGAGGATTTGGACGTACTTTGAGGATGAGGAGCTGATCAAGGCATTGTTCGAGATTGCTTTGGATCCAAGCTGGAAATCAGAAGGGGGTTTCAAAAATGGATACTGCCAAGTTCTAGAGAACGTGCTTGCTAAGAAGTTGCCAAGTTCTGGCCTTACTGCTGTTCCGCACATAGAGTCGAGAGTAAGACACTTTAGGACCAAGTTTGGCGCAATTGAAGTGATGCTAACCAAAAGTGGCTTTTCTTGGGATGACAATAGAAAGATGATACAATGTGAGAAACAACAATACGATGATCATTGCAGGGTAAGTCATCAAACTAACTATGGAGTAGAAAATTTATTTATTGATTCATGAGTGCATTGAATTGAAATATGTGAAACTACTGTAAGATATTTTATGAAATTTTGTTCCAAATAAGCGGCTATGTAAAATTCCTCTGAAATGTTTGCAAAGACAACATTATGGTTTTCTAGTAGTATGCTTTCTCATACATATGTTCTCTTGTGTTTTTCATGCAATTGTAGCTGCATAGGTCTCTCTTTTGCTTGCTAAACCATGACCTTAATTTTGTGTCATTCTTTGTATTTTACAGAAAAACAATGAGGCAAAGGGTCTATATGGTGTAGCATTCCCTCACTATGATACACTAGCTGCAATTTATGGTAAAGACATTGCTACTGGAGAAGGTGCAGAGGGTCTTGGTGAGGCTGTTGCTAATATGGAGAAAGAAATTGTTCAAGATATTCAAGATGAAGAAGATGAGGAGGATGAAGAGAGAGTGTCTAGAGAAACGCCTCGGCGGAGCATCGATTCAGCTGCAGCTCGACGGAGCATCGATTCAGCTGCAGCTCGACGGAGCATCGATTCAGCCACACCTCGACGGAGCATTGATTCAACTGCTTCAAGCTCTAAGAAGAGGAAGAAAGACAGCAACAAACTGAAAAATACCTTGTCAAGTGACCCTTTTATGGATGTCTTTGCCAATGTTCAAGGTGATCTGAGGGATGTTACAAAGCATGTGGGAGCAATGGTGGCATCTATGCAACGTGAAGCTGAGATCCAAGAGAAGGCAATGGCTGAGGAGGACCCACTACAAAAAATTCAGAACGAAGCTATTCTTGAGTGTCAAAAGATTGGATTGACTGGTACTGAAGTTGTCAATGCTGCAGCTGCTTTTGTAAAAGTGCCGGCTCAAATGAGTATGCTTCTCGCTCTTCCAGAGTCTCTCAGGAGGGAGTACGTACTGAAAATACTTGCTGGTAATTCACTTGATCAATCTTGTAGTGTTGCAAATGCAACAGGAAACATATCACTTTATTTTGTGATCATTAATTGTAAGCATATTGCTCTTTACCACTTAGCATTTCATATATGCATTCATATTATTTGCCTTGCACTAGTATAA
More
|
||||||||||
| CDS seq | ATGGAGCATCTTGGAAGCTCAAGCATTGTGCGTGGGAGAGGCAAGAACAAGAGGATTTGGACGTACTTTGAGGATGAGGAGCTGATCAAGGCATTGTTCGAGATTGCTTTGGATCCAAGCTGGAAATCAGAAGGGGGTTTCAAAAATGGATACTGCCAAGTTCTAGAGAACGTGCTTGCTAAGAAGTTGCCAAGTTCTGGCCTTACTGCTGTTCCGCACATAGAGTCGAGAGTAAGACACTTTAGGACCAAGTTTGGCGCAATTGAAGTGATGCTAACCAAAAGTGGCTTTTCTTGGGATGACAATAGAAAGATGATACAATGTGAGAAACAACAATACGATGATCATTGCAGGAAAAACAATGAGGCAAAGGGTCTATATGGTGTAGCATTCCCTCACTATGATACACTAGCTGCAATTTATGGTAAAGACATTGCTACTGGAGAAGGTGCAGAGGGTCTTGGTGAGGCTGTTGCTAATATGGAGAAAGAAATTGTTCAAGATATTCAAGATGAAGAAGATGAGGAGGATGAAGAGAGAGTGTCTAGAGAAACGCCTCGGCGGAGCATCGATCGGAGCATTGATTCAACTGCTTCAAGCTCTAAGAAGAGGAAGAAAGACAGCAACAAACTGAAAAATACCTTGTCAAGTGACCCTTTTATGGATGTCTTTGCCAATGTTCAAGGTGATCTGAGGGATGTTACAAAGCATGTGGGAGCAATGGTGGCATCTATGCAACGTGAAGCTGAGATCCAAGAGAAGGCAATGGCTGAGGAGGACCCACTACAAAAAATTCAGAACGAAGCTATTCTTGAGTGTCAAAAGATTGGATTGACTGGTACTGAAGTTGTCAATGCTGCAGCTGCTTTTGTAAAAGTGCCGGCTCAAATGAGTATGCTTCTCGCTCTTCCAGAGTCTCTCAGGAGGGAGTACGTACTGAAAATACTTGCTGGTAATTCACTTGATCAATCTTGTAGTGTTGCAAATGCAACAGGAAACATATCACTTTATTTTGTGATCATTAATTGTAAGCATATTGCTCTTTACCACTTAGCATTTCATATATGCATTCATATTATTTGCCTTGCACTAGTATAA
More
|
||||||||||
| Protein seq | MEHLGSSSIVRGRGKNKRIWTYFEDEELIKALFEIALDPSWKSEGGFKNGYCQVLENVLAKKLPSSGLTAVPHIESRVRHFRTKFGAIEVMLTKSGFSWDDNRKMIQCEKQQYDDHCRKNNEAKGLYGVAFPHYDTLAAIYGKDIATGEGAEGLGEAVANMEKEIVQDIQDEEDEEDEERVSRETPRRSIDRSIDSTASSSKKRKKDSNKLKNTLSSDPFMDVFANVQGDLRDVTKHVGAMVASMQREAEIQEKAMAEEDPLQKIQNEAILECQKIGLTGTEVVNAAAAFVKVPAQMSMLLALPESLRREYVLKILAGNSLDQSCSVANATGNISLYFVIINCKHIALYHLAFHICIHIICLALV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0590366 | OsNip_04t0590366-00 | Chr04 | 29853141 | 29854596 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCATCTTGGAAGCTCAAGCATTGTGCGTGGGAGAGGCAAGAACAAGAGGATTTGGACGTACTTTGAGGATGAGGAGCTGATCAAGGCATTGTTCGAGATTGCTTTGGATCCAAGCTGGAAATCAGAAGGGGGTTTCAAAAATGGATACTGCCAAGTTCTAGAGAACGTGCTTGCTAAGAAGTTGCCAAGTTCTGGCCTTACTGCTGTTCCGCACATAGAGTCGAGAGTAAGACACTTTAGGACCAAGTTTGGCGCAATTGAAGTGATGCTAACCAAAAGTGGCTTTTCTTGGGATGACAATAGAAAGATGATACAATGTGAGAAACAACAATACGATGATCATTGCAGGAAAAACAATGAGGCAAAGGGTCTATATGGTGTAGCATTCCCTCACTATGATACACTAGCTGCAATTTATGGTAAAGACATTGCTACTGGAGAAGGTGCAGAGGGTCTTGGTGAGGCTGTTGCTAATATGGAGAAAGAAATTGTTCAAGATATTCAAGATGAAGAAGATGAGGAGGATGAAGAGAGAGTGTCTAGAGAAACGCCTCGGCGGAGCATCGATCGGAGCATTGATTCAACTGCTTCAAGCTCTAAGAAGAGGAAGAAAGACAGCAACAAACTGAAAAATACCTTGTCAAGTGACCCTTTTATGGATGTCTTTGCCAATGTTCAAGGTGATCTGAGGGATGTTACAAAGCATGTGGGAGCAATGGTGGCATCTATGCAACGTGAAGCTGAGATCCAAGAGAAGGCAATGGCTGAGGAGGACCCACTACAAAAAATTCAGAACGAAGCTATTCTTGAGTGTCAAAAGATTGGATTGACTGGTACTGAAGTTGTCAATGCTGCAGCTGCTTTTGTAAAAGTGCCGGCTCAAATGAGTATGCTTCTCGCTCTTCCAGAGTCTCTCAGGAGGGAGTACGTACTGAAAATACTTGCTGGTAATTCACTTGATCAATCTTGTAGTGTTGCAAATGCAACAGGAAACATATCACTTTATTTTGTGATCATTAATTGTAAGCATATTGCTCTTTACCACTTAGCATTTCATATATGCATTCATATTATTTGCCTTGCACTAGTATAA
More
|
|||||||
| Protein seq | MEHLGSSSIVRGRGKNKRIWTYFEDEELIKALFEIALDPSWKSEGGFKNGYCQVLENVLAKKLPSSGLTAVPHIESRVRHFRTKFGAIEVMLTKSGFSWDDNRKMIQCEKQQYDDHCRKNNEAKGLYGVAFPHYDTLAAIYGKDIATGEGAEGLGEAVANMEKEIVQDIQDEEDEEDEERVSRETPRRSIDRSIDSTASSSKKRKKDSNKLKNTLSSDPFMDVFANVQGDLRDVTKHVGAMVASMQREAEIQEKAMAEEDPLQKIQNEAILECQKIGLTGTEVVNAAAAFVKVPAQMSMLLALPESLRREYVLKILAGNSLDQSCSVANATGNISLYFVIINCKHIALYHLAFHICIHIICLALV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0523800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g50050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0590366 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024790 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008080 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025210 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019140 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007360 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0471700 | RBH | 0.0050905 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023880 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0474900 | RBH | 0.005117 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024170 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024790 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024890 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019440 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0011820 | SBH | 0.0 | 0.0 | 0.0 |
