Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0589700 | OGI:04088460 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:29809222-29810808 | ||||||||
| Gene Symbol | OsPUB35 | ||||||||||
| DNA seq | ACTCAAGCCAAGAAATCGAGCTGCTGCTTTGTTTGATCGCAATGGCAATGGAGCCTCCTCCCCTGTTCCTGTGCCCCATCTCGATGGAGCTAATGGAGGACCCCGTCACGGTGGCCACCGGCGTCACCTACGACCGCCGGAGCATCGAGCGGTGGTTCTTCAAGTACGGCAAGACGACGTGCCCGGCCACCATGCAGCGGCTTGCTTCCTTCGACTTCACTCCCAACCACACCCTCAAGCGCGTCATCTCGTCGTGGCTGGACCGCGCCTCCTCGTCGTCGTCGCCGAGCACGGCCGGCTCGCCGGCGACGACGTCGTCGTCGTCGTCGTCAAACGCGATGGAGAGGGAGAGGTTGCCGTCGGTGCTCGCTGGCATTGAGGAGACGCCGTTCAAGGCGACCGCGCTCAAGAACCTCAAGTCCTGCATGGCCGGCGACGAGGCGGCGCGGGAGGATTTCGTGGCGTGCGGCGGCATCCAGGTGCTCGGCCGGGTCATGACGCAGGCGCTGGAGGAGAGCTCCGCCGGGGGGGACTTCTCGGCGTTCCGGACGTGCGAGGAGGCCGCCGCCGTCCTCGCCACGCTGCCGCTCTCGGACGACGCGTCGGTGGAGCTCCTGCTCAAGCCGGAGTGCATAAGGCCCGTGTCCGTGCTGGTCCAGCGCGGCAGCGCCGAGGCGAGGCTGCACGCAATGTCCATGATCTCCAAGATCTCCAGGGCCAGCGTCCGCGACTGGACCGCGGAGGTCGACGTCGACGACATGGTCAAGGCCCTCCTCGAGCTCCTCTCCGACGGCGCCTCCGCGAAGCTGAGCTCCCGCGCGCTCGACGTGCTCCTCGACGTCACGGCGCGGTACTCCCGCGGCGCGCGGCGCGCCAAGGCCGTGGAGCTGGGCGCCGTGCGCGTCCTCGCCGAGCTCCTCCTCGACGCCGACCGCCACGTCGCCGAGCGGTCGCTCCTCCTCCTGAAGCGCATGTGCAAGTGCCCCGAGGGGCGGCTGGCCTTCGCCGAGCACGGGCTGGCGGTGGCCGCCGTGGCGCGCGCCGTGCTCCGGGTGTCCGGGCTCGCCACGAGGCTCGCCGTCAACGTGCTGTGGCTGGTGGCGTGCGCCCCGGCCCCCGCCGAGAGGGTGCTGGAGGACATGGTGGTGGGCGGCGCCGTGGCGAAGCTGCTGGCGCTGATGCAAGTGGAGAGCTCGCCGTCGACCAAGGACAAGGCGGTGAAGATGCTGCGAGCGCACGGCGCGTTCTGGAGGCAGTACCCTTGCTTCCCCACGGACCTCAAGGACTACCTCAAATCTCTCAACTGATCATCTTTCAGAGTGATCAGTAAAGTGATTTGTAAATTGTAAATTAAGAGAAATTGGATGTGTATTGTTTTGTAGGAATACAGGAGATTAAAGCAGGACATTCAGCATGGTATATGCATCTGTGTTTGTGTGTGGGCTGTCTAAAATCGCATGAATTCTGCGTGATTTTCATAGAAATTTGAAATTAAACAATTCAAGTGCATTAGGAGATAGGAAAAAAAATCTAGGTGGTGTTTTTTTTCTAAAGATGAAGATTAAGATTAAGATTAAGCTTTTTACG
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| CDS seq | ATGGCAATGGAGCCTCCTCCCCTGTTCCTGTGCCCCATCTCGATGGAGCTAATGGAGGACCCCGTCACGGTGGCCACCGGCGTCACCTACGACCGCCGGAGCATCGAGCGGTGGTTCTTCAAGTACGGCAAGACGACGTGCCCGGCCACCATGCAGCGGCTTGCTTCCTTCGACTTCACTCCCAACCACACCCTCAAGCGCGTCATCTCGTCGTGGCTGGACCGCGCCTCCTCGTCGTCGTCGCCGAGCACGGCCGGCTCGCCGGCGACGACGTCGTCGTCGTCGTCGTCAAACGCGATGGAGAGGGAGAGGTTGCCGTCGGTGCTCGCTGGCATTGAGGAGACGCCGTTCAAGGCGACCGCGCTCAAGAACCTCAAGTCCTGCATGGCCGGCGACGAGGCGGCGCGGGAGGATTTCGTGGCGTGCGGCGGCATCCAGGTGCTCGGCCGGGTCATGACGCAGGCGCTGGAGGAGAGCTCCGCCGGGGGGGACTTCTCGGCGTTCCGGACGTGCGAGGAGGCCGCCGCCGTCCTCGCCACGCTGCCGCTCTCGGACGACGCGTCGGTGGAGCTCCTGCTCAAGCCGGAGTGCATAAGGCCCGTGTCCGTGCTGGTCCAGCGCGGCAGCGCCGAGGCGAGGCTGCACGCAATGTCCATGATCTCCAAGATCTCCAGGGCCAGCGTCCGCGACTGGACCGCGGAGGTCGACGTCGACGACATGGTCAAGGCCCTCCTCGAGCTCCTCTCCGACGGCGCCTCCGCGAAGCTGAGCTCCCGCGCGCTCGACGTGCTCCTCGACGTCACGGCGCGGTACTCCCGCGGCGCGCGGCGCGCCAAGGCCGTGGAGCTGGGCGCCGTGCGCGTCCTCGCCGAGCTCCTCCTCGACGCCGACCGCCACGTCGCCGAGCGGTCGCTCCTCCTCCTGAAGCGCATGTGCAAGTGCCCCGAGGGGCGGCTGGCCTTCGCCGAGCACGGGCTGGCGGTGGCCGCCGTGGCGCGCGCCGTGCTCCGGGTGTCCGGGCTCGCCACGAGGCTCGCCGTCAACGTGCTGTGGCTGGTGGCGTGCGCCCCGGCCCCCGCCGAGAGGGTGCTGGAGGACATGGTGGTGGGCGGCGCCGTGGCGAAGCTGCTGGCGCTGATGCAAGTGGAGAGCTCGCCGTCGACCAAGGACAAGGCGGTGAAGATGCTGCGAGCGCACGGCGCGTTCTGGAGGCAGTACCCTTGCTTCCCCACGGACCTCAAGGACTACCTCAAATCTCTCAACTGA
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| Protein seq | MAMEPPPLFLCPISMELMEDPVTVATGVTYDRRSIERWFFKYGKTTCPATMQRLASFDFTPNHTLKRVISSWLDRASSSSSPSTAGSPATTSSSSSSNAMERERLPSVLAGIEETPFKATALKNLKSCMAGDEAAREDFVACGGIQVLGRVMTQALEESSAGGDFSAFRTCEEAAAVLATLPLSDDASVELLLKPECIRPVSVLVQRGSAEARLHAMSMISKISRASVRDWTAEVDVDDMVKALLELLSDGASAKLSSRALDVLLDVTARYSRGARRAKAVELGAVRVLAELLLDADRHVAERSLLLLKRMCKCPEGRLAFAEHGLAVAAVARAVLRVSGLATRLAVNVLWLVACAPAPAERVLEDMVVGGAVAKLLALMQVESSPSTKDKAVKMLRAHGAFWRQYPCFPTDLKDYLKSLN |
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| Function | E3 ubiquitin-protein ligase PUB23 [UniProtKB/Swiss-Prot:Q84TG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0589700 | OsNip_04t0589700-01 | Chr04 | 29809222 | 29810808 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAATGGAGCCTCCTCCCCTGTTCCTGTGCCCCATCTCGATGGAGCTAATGGAGGACCCCGTCACGGTGGCCACCGGCGTCACCTACGACCGCCGGAGCATCGAGCGGTGGTTCTTCAAGTACGGCAAGACGACGTGCCCGGCCACCATGCAGCGGCTTGCTTCCTTCGACTTCACTCCCAACCACACCCTCAAGCGCGTCATCTCGTCGTGGCTGGACCGCGCCTCCTCGTCGTCGTCGCCGAGCACGGCCGGCTCGCCGGCGACGACGTCGTCGTCGTCGTCGTCAAACGCGATGGAGAGGGAGAGGTTGCCGTCGGTGCTCGCTGGCATTGAGGAGACGCCGTTCAAGGCGACCGCGCTCAAGAACCTCAAGTCCTGCATGGCCGGCGACGAGGCGGCGCGGGAGGATTTCGTGGCGTGCGGCGGCATCCAGGTGCTCGGCCGGGTCATGACGCAGGCGCTGGAGGAGAGCTCCGCCGGGGGGGACTTCTCGGCGTTCCGGACGTGCGAGGAGGCCGCCGCCGTCCTCGCCACGCTGCCGCTCTCGGACGACGCGTCGGTGGAGCTCCTGCTCAAGCCGGAGTGCATAAGGCCCGTGTCCGTGCTGGTCCAGCGCGGCAGCGCCGAGGCGAGGCTGCACGCAATGTCCATGATCTCCAAGATCTCCAGGGCCAGCGTCCGCGACTGGACCGCGGAGGTCGACGTCGACGACATGGTCAAGGCCCTCCTCGAGCTCCTCTCCGACGGCGCCTCCGCGAAGCTGAGCTCCCGCGCGCTCGACGTGCTCCTCGACGTCACGGCGCGGTACTCCCGCGGCGCGCGGCGCGCCAAGGCCGTGGAGCTGGGCGCCGTGCGCGTCCTCGCCGAGCTCCTCCTCGACGCCGACCGCCACGTCGCCGAGCGGTCGCTCCTCCTCCTGAAGCGCATGTGCAAGTGCCCCGAGGGGCGGCTGGCCTTCGCCGAGCACGGGCTGGCGGTGGCCGCCGTGGCGCGCGCCGTGCTCCGGGTGTCCGGGCTCGCCACGAGGCTCGCCGTCAACGTGCTGTGGCTGGTGGCGTGCGCCCCGGCCCCCGCCGAGAGGGTGCTGGAGGACATGGTGGTGGGCGGCGCCGTGGCGAAGCTGCTGGCGCTGATGCAAGTGGAGAGCTCGCCGTCGACCAAGGACAAGGCGGTGAAGATGCTGCGAGCGCACGGCGCGTTCTGGAGGCAGTACCCTTGCTTCCCCACGGACCTCAAGGACTACCTCAAATCTCTCAACTGA
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| Protein seq | MAMEPPPLFLCPISMELMEDPVTVATGVTYDRRSIERWFFKYGKTTCPATMQRLASFDFTPNHTLKRVISSWLDRASSSSSPSTAGSPATTSSSSSSNAMERERLPSVLAGIEETPFKATALKNLKSCMAGDEAAREDFVACGGIQVLGRVMTQALEESSAGGDFSAFRTCEEAAAVLATLPLSDDASVELLLKPECIRPVSVLVQRGSAEARLHAMSMISKISRASVRDWTAEVDVDDMVKALLELLSDGASAKLSSRALDVLLDVTARYSRGARRAKAVELGAVRVLAELLLDADRHVAERSLLLLKRMCKCPEGRLAFAEHGLAVAAVARAVLRVSGLATRLAVNVLWLVACAPAPAERVLEDMVVGGAVAKLLALMQVESSPSTKDKAVKMLRAHGAFWRQYPCFPTDLKDYLKSLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0690600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0589700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024720 | RBH | 0.0 | 6.139353 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025480 | RBH | 0.0 | 2.151802 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025140 | RBH | 0.0 | 6.961154 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024930 | RBH | 0.0 | 0.075624 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025160 | RBH | 0.0 | 8.854093 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0470800 | RBH | 0.0165175 | 1.4844105 | 0.0398555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023930 | RBH | 0.0 | 0.102819 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0474000 | RBH | 0.031579 | 2.8455205 | 0.3284445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024370 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024220 | RBH | 0.0 | 9.682817 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024290 | RBH | 0.0 | 4.047600 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024720 | RBH | 0.0 | 0.153211 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024930 | RBH | 0.0 | 2.663725 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024170 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024060 | RBH | 0.0 | 0.0 | 0.0 |
