Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0587500 | OGI:04088140 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:29669835-29672579 | ||||||||
| Gene Symbol | PUP13, OsPUP13 | ||||||||||
| DNA seq | ACATGAGATTGTTTACAAGCTTCTCAAATTGGTTCTGGTACTTCCAGTAGCAACAGCTAGTGTTGAAAGAATATTTTCTGCCATGAATTATGTGAAGAATAAATTGAGAAACAGGATGGGGGATCAATACTTGAATGATTGCTTGGTCACATTTATTGAGCGTGAGATGTTTTTGAAAGTCAAGGAGTGTGATATTATAAACCGCTTTCAAGCCATGAAGGAACGCAGAATTAAAGCTACTCTTCCAAGCCACGAAGGAACCGAAATAGAAAATTAGAGGTACCATGTAATAATTTGTAATTTTATTTCTTAGATTATCGGTATTGACATACTGTGAACCATTGATTTTTTTTACTATGAATTTTTTTGTTAGACGGGAATACCCAACTTTCAAATCCTGGCTCCGCCACTGAGGAATAAATAAAAAATATATAGAGAAAGTGGGAAACATCACTTCTCCATGCATGGGCCCTCTTATTATTTTTTTTTTGAGGGCACTCTTAGTCTTATCTTCATCATATAGTAGTGTGACTAGTGTCATTGAATTCAACACAAGTAAGACCAGAGTAGACGTAAGCAGGCTTAGCAACAACACATAAGGCATGGTCCACAGGCCCCATCGCGTTGTATTTTGCAAAGAAAAACAAAAAGACAAAAAAACACACAGAGGAATATTTTTTATATACGTAAATGACATATTCTCTACTTCTCAAATTGATCATCATAGAACAAAATCCAAAATTTCTTAAATTGATCATTATATAACTGCATGATATAACTGTATGGACACAAATTTTATCGGAATACGATTAATATAACATGAGAGAATGTGTGCATGCTAGGGCGTAATTGGCATATTGTTTTAATTGATGTATACATTGTGGAAGAATGTGTGCATGTTGTCTTGATTGATGCGATTTAAATTATTATTGGTCTTGGTGTATAAATATATATGATGATCAATTTAGAATGGCGGAAGTATTTACTTTGAAACTTATAAGGTATTTTTTTCGCAGTACACACGCTATTTAAAAGTAGTATATAAAAATCAACTTAAAAGAGGAGACATATGAGATTCAGAGAGGTAGCAATTACATTGAAAAAAGTGGCTGAAATCAAATAGTATATGATGTCGTATTTTTTTAGCAAAACCGTTTTCTTATTTTACATGTAACCTTTTGTTTTGTTTCCCCCTAAATTTCCCTTATTTTATCCACGATCCCTTAAAACTAGATCGTCACTCCAGTTCCTTGTGATATTTGTACCTTTTTTTTTACAAATATTCTTTCAAAAAATGGAGAACTATCAGATGAGAAATGATAAAGTTGATCTTTTCCGTTGCTTACATTTTGTGTTTGAGAAGTAAGCTTACTGATGACGGTGACACTAAACAGCCATGTCTTCTGTTTGCAAACTTATGCCAGAACAAGAGTCTGACCATGGCGAGGACGGCTCTGCACCAAAAGCCGCCGCCGTGCGTGGTGGGTCACCGAGAGGCGGCGTCCGGTGGTGGCTGTCGGTGGCGGCGGACATGTTCATGGTGCTCTGCGGCCAGACCGTGGCCACCCTCCTCGGCCGCCTGTACTACAACTCCGGCGGCAACAGCAAGTGGATGGCCACGCTCACGCAGTCCGCCGGCTCGCCGCTGCTCGCCATCCTTCTCCTCTTCACGCCGGCGCCCGCCGCCGACGAGCCCAGGCCGGCGGCGGCAAAGATGGCGCCCATCTACGTCGGCCTCGGGATCATCATCGGCTTCGACAACCTGATGTACTCGTACGCGCTGCAGTACCTGCCGGTGTCCACCTTCTCGCTCGTGGCCGCGACGCAGCTCGGCTTCAACTCCGTCACCTCCAGGCTCATCAACGCGCAGCGGTTCACGGTGCTGATCGCCAACTCCGTCGTCGTGCTCACCTTCTCGGCGGCGCTGCTCGGCATCGGGGCCTCCTCCGACGAGACCGCCAGCAGCGTGCCGAGGGGCAAGTACCCCGCCGGGTTCGCCCTGACGCTCGCCGCCTCCGCCGTGTTCGCGCTCATCCTGTCGCTGTTCGAGGCCACCTTCGAGAAGGTGGTCCGGACGCGGACGCTCCGGTGGGTTCTGCGCGCGCAGCTGTGGACCAACGTGGTGGCGTCGACGGTGTCGGCGGTGGGGCTGCTCGCGTCGGGGGACTGGAGGACGATACCGGCGGAGATGGCGGCGTTCAAGGACGGGAGGGCGAGGTACGTGGCGACGCTGGTCGGGACGGCGGTGTCGTGGCAGGTGATGGCGGTGGGCTCGCTGCGGCTGATCGTGAGGGTGTCGTCGCTGTTCGCCAACGTGACGGGCACGCTGTCGCTGCCGCTGGTGCCGGTGTTCGCCGTCGCGCTGTTCGGGGACAGGATGACCGGGATCAAGGCCGTATCCATGCTCATGGCCGTCTGGGGTTTCCTCTCGTACGCGTACCAGCAGTACATCGACGGCCGGCGCGCGGCCGGCGCCGGGAAGGGGAGAGCGGCGGCGGAGTGCCGCGTTTGCGCCGCGCGCGCCGGCAGCGATCCGGACTCGCCCGCGTGAGGGGCCCGCGTTTTCTCACGGCCCAACAAACCGAAAGTAGCTCACGTCTACTTTTCGCCTGAGGCCCAATACACAGAGGACATGTAGGCCCATCGGCTTGTGTTTTGAGATACTGTTTAGGTTTTAAACCGTGTATCCATCATCTGTAGGGCCCCTTGGAAAGGAATAATTCACTCGAGGTTCTTTAATTTGTC
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| CDS seq | AAAATTAGAGAACAAGAGTCTGACCATGGCGAGGACGGCTCTGCACCAAAAGCCGCCGCCGTGCGTGGTGGGTCACCGAGAGGCGGCGTCCGGTGGTGGCTGTCGGTGGCGGCGGACATGTTCATGGTGCTCTGCGGCCAGACCGTGGCCACCCTCCTCGGCCGCCTGTACTACAACTCCGGCGGCAACAGCAAGTGGATGGCCACGCTCACGCAGTCCGCCGGCTCGCCGCTGCTCGCCATCCTTCTCCTCTTCACGCCGGCGCCCGCCGCCGACGAGCCCAGGCCGGCGGCGGCAAAGATGGCGCCCATCTACGTCGGCCTCGGGATCATCATCGGCTTCGACAACCTGATGTACTCGTACGCGCTGCAGTACCTGCCGGTGTCCACCTTCTCGCTCGTGGCCGCGACGCAGCTCGGCTTCAACTCCGTCACCTCCAGGCTCATCAACGCGCAGCGGTTCACGGTGCTGATCGCCAACTCCGTCGTCGTGCTCACCTTCTCGGCGGCGCTGCTCGGCATCGGGGCCTCCTCCGACGAGACCGCCAGCAGCGTGCCGAGGGGCAAGTACCCCGCCGGGTTCGCCCTGACGCTCGCCGCCTCCGCCGTGTTCGCGCTCATCCTGTCGCTGTTCGAGGCCACCTTCGAGAAGGTGGTCCGGACGCGGACGCTCCGGTGGGTTCTGCGCGCGCAGCTGTGGACCAACGTGGTGGCGTCGACGGTGTCGGCGGTGGGGCTGCTCGCGTCGGGGGACTGGAGGACGATACCGGCGGAGATGGCGGCGTTCAAGGACGGGAGGGCGAGGTACGTGGCGACGCTGGTCGGGACGGCGGTGTCGTGGCAGGTGATGGCGGTGGGCTCGCTGCGGCTGATCGTGAGGGTGTCGTCGCTGTTCGCCAACGTGACGGGCACGCTGTCGCTGCCGCTGGTGCCGGTGTTCGCCGTCGCGCTGTTCGGGGACAGGATGACCGGGATCAAGGCCGTATCCATGCTCATGGCCGTCTGGGGTTTCCTCTCGTACGCGTACCAGCAGTACATCGACGGCCGGCGCGCGGCCGGCGCCGGGAAGGGGAGAGCGGCGGCGGAGTGCCGCGTTTGCGCCGCGCGCGCCGGCAGCGATCCGGACTCGCCCGCGTGA
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| Protein seq | KIREQESDHGEDGSAPKAAAVRGGSPRGGVRWWLSVAADMFMVLCGQTVATLLGRLYYNSGGNSKWMATLTQSAGSPLLAILLLFTPAPAADEPRPAAAKMAPIYVGLGIIIGFDNLMYSYALQYLPVSTFSLVAATQLGFNSVTSRLINAQRFTVLIANSVVVLTFSAALLGIGASSDETASSVPRGKYPAGFALTLAASAVFALILSLFEATFEKVVRTRTLRWVLRAQLWTNVVASTVSAVGLLASGDWRTIPAEMAAFKDGRARYVATLVGTAVSWQVMAVGSLRLIVRVSSLFANVTGTLSLPLVPVFAVALFGDRMTGIKAVSMLMAVWGFLSYAYQQYIDGRRAAGAGKGRAAAECRVCAARAGSDPDSPA |
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| Function | Probable purine permease 11 [UniProtKB/Swiss-Prot:Q9LPF6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0587500 | OsNip_04t0587500-01 | Chr04 | 29669835 | 29672579 | + | RAP2018-11-26 | ||
| CDS seq | AAAATTAGAGAACAAGAGTCTGACCATGGCGAGGACGGCTCTGCACCAAAAGCCGCCGCCGTGCGTGGTGGGTCACCGAGAGGCGGCGTCCGGTGGTGGCTGTCGGTGGCGGCGGACATGTTCATGGTGCTCTGCGGCCAGACCGTGGCCACCCTCCTCGGCCGCCTGTACTACAACTCCGGCGGCAACAGCAAGTGGATGGCCACGCTCACGCAGTCCGCCGGCTCGCCGCTGCTCGCCATCCTTCTCCTCTTCACGCCGGCGCCCGCCGCCGACGAGCCCAGGCCGGCGGCGGCAAAGATGGCGCCCATCTACGTCGGCCTCGGGATCATCATCGGCTTCGACAACCTGATGTACTCGTACGCGCTGCAGTACCTGCCGGTGTCCACCTTCTCGCTCGTGGCCGCGACGCAGCTCGGCTTCAACTCCGTCACCTCCAGGCTCATCAACGCGCAGCGGTTCACGGTGCTGATCGCCAACTCCGTCGTCGTGCTCACCTTCTCGGCGGCGCTGCTCGGCATCGGGGCCTCCTCCGACGAGACCGCCAGCAGCGTGCCGAGGGGCAAGTACCCCGCCGGGTTCGCCCTGACGCTCGCCGCCTCCGCCGTGTTCGCGCTCATCCTGTCGCTGTTCGAGGCCACCTTCGAGAAGGTGGTCCGGACGCGGACGCTCCGGTGGGTTCTGCGCGCGCAGCTGTGGACCAACGTGGTGGCGTCGACGGTGTCGGCGGTGGGGCTGCTCGCGTCGGGGGACTGGAGGACGATACCGGCGGAGATGGCGGCGTTCAAGGACGGGAGGGCGAGGTACGTGGCGACGCTGGTCGGGACGGCGGTGTCGTGGCAGGTGATGGCGGTGGGCTCGCTGCGGCTGATCGTGAGGGTGTCGTCGCTGTTCGCCAACGTGACGGGCACGCTGTCGCTGCCGCTGGTGCCGGTGTTCGCCGTCGCGCTGTTCGGGGACAGGATGACCGGGATCAAGGCCGTATCCATGCTCATGGCCGTCTGGGGTTTCCTCTCGTACGCGTACCAGCAGTACATCGACGGCCGGCGCGCGGCCGGCGCCGGGAAGGGGAGAGCGGCGGCGGAGTGCCGCGTTTGCGCCGCGCGCGCCGGCAGCGATCCGGACTCGCCCGCGTGA
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| Protein seq | KIREQESDHGEDGSAPKAAAVRGGSPRGGVRWWLSVAADMFMVLCGQTVATLLGRLYYNSGGNSKWMATLTQSAGSPLLAILLLFTPAPAADEPRPAAAKMAPIYVGLGIIIGFDNLMYSYALQYLPVSTFSLVAATQLGFNSVTSRLINAQRFTVLIANSVVVLTFSAALLGIGASSDETASSVPRGKYPAGFALTLAASAVFALILSLFEATFEKVVRTRTLRWVLRAQLWTNVVASTVSAVGLLASGDWRTIPAEMAAFKDGRARYVATLVGTAVSWQVMAVGSLRLIVRVSSLFANVTGTLSLPLVPVFAVALFGDRMTGIKAVSMLMAVWGFLSYAYQQYIDGRRAAGAGKGRAAAECRVCAARAGSDPDSPA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0587500 | OsNip_04t0587500-02 | Chr04 | 29671208 | 29672577 | + | IsoSeq | ||
| CDS seq | GATGACGGTGACACTAAACAGCCATGTCTTCTGTTTGCAAACTTATGCCAGAACAAGAGTCTGACCATGGCGAGGACGGCTCTGCACCAAAAGCCGCCGCCGTGCGTGGTGGGTCACCGAGAGGCGGCGTCCGGTGGTGGCTGTCGGTGGCGGCGGACATGTTCATGGTGCTCTGCGGCCAGACCGTGGCCACCCTCCTCGGCCGCCTGTACTACAACTCCGGCGGCAACAGCAAGTGGATGGCCACGCTCACGCAGTCCGCCGGCTCGCCGCTGCTCGCCATCCTTCTCCTCTTCACGCCGGCGCCCGCCGCCGACGAGCCCAGGCCGGCGGCGGCAAAGATGGCGCCCATCTACGTCGGCCTCGGGATCATCATCGGCTTCGACA
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| Protein seq | DDGDTKQPCLLFANLCQNKSLTMARTALHQKPPPCVVGHREAASGGGCRWRRTCSWCSAARPWPPSSAACTTTPAATASGWPRSRSPPARRCSPSFSSSRRRPPPTSPGRRRQRWRPSTSASGSSSAST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.886314 | 0.801058 | 0.869677 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0689200 | SBH | 3.489594 | 1.961761 | 1.428105 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49757 | RBH | 0.421097 | 0.430361 | 0.153896 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0587500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024600 | RBH | 0.059591 | 1.210160 | 0.391285 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025360 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025020 | RBH | 0.197524 | 0.958750 | 1.392251 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024810 | SBH | 0.035716 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025040 | RBH | 3.569415 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0469200 | RBH | 7.5429975 | 2.930273 | 1.7609265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023800 | RBH | 0.488905 | 0.130291 | 0.318003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0472300 | RBH | 7.5413225 | 2.454963 | 0.0604725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024270 | RBH | 0.102464 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024080 | RBH | 0.141177 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024610 | RBH | 0.649546 | 0.0 | 0.224889 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024820 | RBH | 0.404821 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024050 | RBH | 0.299954 | 0.0 | 1.083709 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023960 | RBH | 1.895883 | 0.0 | 1.449012 |
