Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0564000 | OGI:04084260 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:28273505-28275830 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAGAGAGAGAGCAAAGCTAATCGTTGGCTAAATCTTTTTTTGCTCTGTATCTCCTCTTGAAAACATCTTCCCTGAACTGCTTGGTTTCTACCTTCAGGTCCATGGCAGGAATCTGCTGGATGGTCTCTTTCTCGGTCTCCAGCATCTGCTTCCGCCTTGTGAGCGCCATGATCGCCTCCTGCTTCTCCTCTGCCGTCTGCTTGTGCTTCTCCTGCTGCACATCATCTCCCGTGTCATCATGATCATCACCATCATCAATCACATACTGTAGGAAATATGTGATGTGTTGGTGTCAGAACTGCATCAATGTCTAGTAGTAAAAACAATTTCGTAGGTGAAGAACTGAATTATACATGGAGGGTGCTGCCAGATTTACCTCAAGATCTTGAATGAGGGAATCAAGGGACTTGATCTTCCGGTGAGGCCAGCGGGGTATGTTATATTGCCGGCATTTCCTCTTCAGTATGCTGACTCCGATCTTCAGAGTCCTTGATGCTTCTCTGATTGGGAGATGGAAGTACTGAGCTATGTCAACTAGAGTAATGCTGGCTATATGCTTCTTGTTAGCTCTCCGCTGCTTCTGAACTGTTGGCTTTTCTTCTGCATTTATCCCATAGAGATTAATTGTAACCTTTCAAGTAAATAGAAAGGAAGCACGAAACAATCCAAACAATATGAAATCTCAAACCTCTGAAAGGTATATATACTTTTTAAAATTTTGAAATGAGCAATACAATTTTGGATGTTTGGTTACAGGAAATTGAGATGGATGGTAATCTTAGGGTGTGTTTGGATAATGGGAAATGAGGGGTGGAATTGGGATTGGGAAATGAATGAAGGGTTAGGATTAAATGGATGAGGAAGAATGAATGGTTAAGATTTAAAGAGGGGTGGGAAATAATTTCCCTTAGACATTTGCCCTTAACCATGGGAATCAGGTAGTAACGAATGCGGCATTATTGGGAGCGCACGTGTCAACAAAGTTCAACAAGATTCCGTCCAGTGGGTAATCCAGGGTAGACACATGTTTAAAAAGGAATCCTAATGCCACGCATTACTTGGATCTTGTTTACACCGAATCCTATTTTCCTGATTTACATTTCCAGGTGGTTTTACCAAACATGGAAATTAGTTAGGATTACTCCATGATTCCTGGGAATCTAATCAACATTCCTGCAACCAAACAGCAATGCCAAACCGTCTTAAGGATATGCCAGTTTCACTCTACCTGCCCCTTTCCTCGACCATAAAGTTTGGCTGCTACAAACTAGAATGAAAATCTGAAGCATTTCTCTATTTTTCCACCACCAATTTTCTTTACTAGGGAGAATCAAAGTAGAATAAGATGTTGTACCAGCTGATCAGTAGCAACCCCCACTGAGAAACAGAGAGAATGCATTGCTAACCAAATTTACAGTTACCAACAGATTCCAGTGGAGGGGATCAATCACCTTCACCAGATTGGAGATCATCATCAGAATCAGACTCTGATGCATGAACCTCATCAGAACTTTTATCCCGTGCATCCCAACTGCTCAGTTTCTCCTCCGAATCACACTGCATGAGCTTGGGGATCTTCTCTACATTCTGAAACCGAAACACCTTTTCCAGGTCGTTGTACAGGGAAGGCACACACATCAACCTCGGATTCCTGAAAAGTCAAAAACAGAAGAAGAGAAAACAAAACCGAAGCTTTCAACACTTGATCTCAGTGATAGGATGATAGGAGTAGATTGCAAACTGAAGCAGTTGTGGAGGCAATCAAAATCGTGCAACGACCGTGCGTCGGAATCGGTTCGTTGTTTATATGCGATGCGATCACCGTACAGGAAGGGGGAGAGCACGGGCGGCGGCGTGCGCGGCGGCGCGGCGGCGGAATCGAAGGCCAGAATGCAGCGCCAGGCTCCCGCCGCCACCACCTGCCCCTCGCGGTACGCCGGCCGGCCGCGCCACTCCGCCGGCAGTATCCGTGGCGGCGCGACGGGGGCCGGGACCTCGCGGCACGACGCCGGGGTGAGGACGAACTCCCTCTCCACCCACCTCTCCCACCTCCGCCTCCCTCCCCTCCCGTAGACCTTGTACCCGTGCACGCTCCTCACGGCGCCTGCAATGCATCGACGCAAGAAAGAACCCGTTCTACGTCACGCGACGGCCGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCGATGAGGAAATCAACTAATCAAGAAGAAAAGAGAGCCATGGCGAGCCACCGTGGTCGAGGGTGCTCGCGAAGACGGCGAGCGCGGAGAGGGTGGAGACGGCGGCGGCGGCGGCGTCCATGGAAG
More
|
||||||||||
| CDS seq | ATGGACGCCGCCGCCGCCGCCGTCTCCACCCTCTCCGCGCTCGCCGTCTTCGCGAGCACCCTCGACCACGGCGCCGTGAGGAGCGTGCACGGGTACAAGGTCTACGGGAGGGGAGGGAGGCGGAGGTGGGAGAGGTGGGTGGAGAGGGAGTTCGTCCTCACCCCGGCGTCGTGCCGCGAGGTCCCGGCCCCCGTCGCGCCGCCACGGATACTGCCGGCGGAGTGGCGCGGCCGGCCGGCGTACCGCGAGGGGCAGGTGGTGGCGGCGGGAGCCTGGCGCTGCATTCTGGCCTTCGATTCCGCCGCCGCGCCGCCGCGCACGCCGCCGCCCGTGCTCTCCCCCTTCCTGAATCCGAGGTTGATGTGTGTGCCTTCCCTGTACAACGACCTGGAAAAGGTGTTTCGGTTTCAGAATGTAGAGAAGATCCCCAAGCTCATGCAGTGTGATTCGGAGGAGAAACTGAGCAGTTGGGATGCACGGGATAAAAGTTCTGATGAGGTTCATGCATCAGAGTCTGATTCTGATGATGATCTCCAATCTGGTGAAGAAAAGCCAACAGTTCAGAAGCAGCGGAGAGCTAACAAGAAGCATATAGCCAGCATTACTCTAGTTGACATAGCTCAGTACTTCCATCTCCCAATCAGAGAAGCATCAAGGACTCTGAAGATCGGAGTCAGCATACTGAAGAGGAAATGCCGGCAATATAACATACCCCGCTGGCCTCACCGGAAGATCAAGTCCCTTGATTCCCTCATTCAAGATCTTGAGTATGTGATTGATGATGGTGATGATCATGATGACACGGGAGATGATGTGCAGCAGGAGAAGCACAAGCAGACGGCAGAGGAGAAGCAGGAGGCGATCATGGCGCTCACAAGGCGGAAGCAGATGCTGGAGACCGAGAAAGAGACCATCCAGCAGATTCCTGCCATGGACCTGAAGGTAGAAACCAAGCAGTTCAGGGAAGATGTTTTCAAGAGGAGATACAGAGCAAAAAAAGATTTAGCCAACGATTAG
More
|
||||||||||
| Protein seq | MDAAAAAVSTLSALAVFASTLDHGAVRSVHGYKVYGRGGRRRWERWVEREFVLTPASCREVPAPVAPPRILPAEWRGRPAYREGQVVAAGAWRCILAFDSAAAPPRTPPPVLSPFLNPRLMCVPSLYNDLEKVFRFQNVEKIPKLMQCDSEEKLSSWDARDKSSDEVHASESDSDDDLQSGEEKPTVQKQRRANKKHIASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSLDSLIQDLEYVIDDGDDHDDTGDDVQQEKHKQTAEEKQEAIMALTRRKQMLETEKETIQQIPAMDLKVETKQFREDVFKRRYRAKKDLAND |
||||||||||
| Function | Protein RKD5 [UniProtKB/Swiss-Prot:O81791] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0564000 | OsNip_04t0564000-00 | Chr04 | 28273505 | 28275830 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACGCCGCCGCCGCCGCCGTCTCCACCCTCTCCGCGCTCGCCGTCTTCGCGAGCACCCTCGACCACGGCGCCGTGAGGAGCGTGCACGGGTACAAGGTCTACGGGAGGGGAGGGAGGCGGAGGTGGGAGAGGTGGGTGGAGAGGGAGTTCGTCCTCACCCCGGCGTCGTGCCGCGAGGTCCCGGCCCCCGTCGCGCCGCCACGGATACTGCCGGCGGAGTGGCGCGGCCGGCCGGCGTACCGCGAGGGGCAGGTGGTGGCGGCGGGAGCCTGGCGCTGCATTCTGGCCTTCGATTCCGCCGCCGCGCCGCCGCGCACGCCGCCGCCCGTGCTCTCCCCCTTCCTGAATCCGAGGTTGATGTGTGTGCCTTCCCTGTACAACGACCTGGAAAAGGTGTTTCGGTTTCAGAATGTAGAGAAGATCCCCAAGCTCATGCAGTGTGATTCGGAGGAGAAACTGAGCAGTTGGGATGCACGGGATAAAAGTTCTGATGAGGTTCATGCATCAGAGTCTGATTCTGATGATGATCTCCAATCTGGTGAAGAAAAGCCAACAGTTCAGAAGCAGCGGAGAGCTAACAAGAAGCATATAGCCAGCATTACTCTAGTTGACATAGCTCAGTACTTCCATCTCCCAATCAGAGAAGCATCAAGGACTCTGAAGATCGGAGTCAGCATACTGAAGAGGAAATGCCGGCAATATAACATACCCCGCTGGCCTCACCGGAAGATCAAGTCCCTTGATTCCCTCATTCAAGATCTTGAGTATGTGATTGATGATGGTGATGATCATGATGACACGGGAGATGATGTGCAGCAGGAGAAGCACAAGCAGACGGCAGAGGAGAAGCAGGAGGCGATCATGGCGCTCACAAGGCGGAAGCAGATGCTGGAGACCGAGAAAGAGACCATCCAGCAGATTCCTGCCATGGACCTGAAGGTAGAAACCAAGCAGTTCAGGGAAGATGTTTTCAAGAGGAGATACAGAGCAAAAAAAGATTTAGCCAACGATTAG
More
|
|||||||
| Protein seq | MDAAAAAVSTLSALAVFASTLDHGAVRSVHGYKVYGRGGRRRWERWVEREFVLTPASCREVPAPVAPPRILPAEWRGRPAYREGQVVAAGAWRCILAFDSAAAPPRTPPPVLSPFLNPRLMCVPSLYNDLEKVFRFQNVEKIPKLMQCDSEEKLSSWDARDKSSDEVHASESDSDDDLQSGEEKPTVQKQRRANKKHIASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSLDSLIQDLEYVIDDGDDHDDTGDDVQQEKHKQTAEEKQEAIMALTRRKQMLETEKETIQQIPAMDLKVETKQFREDVFKRRYRAKKDLAND
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47640 | RBH | 0.0 | 0.0 | 0.225892 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0564000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023090 | RBH | 0.0 | 0.0 | 0.619713 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023820 | RBH | 0.0 | 0.0 | 0.273120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023540 | RBH | 0.0 | 0.0 | 1.298231 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023300 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023410 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0444500 | RBH | 0.358577 | 0.216073 | 8.5361635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022250 | RBH | 0.0 | 0.0 | 0.169674 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0448300 | RBH | 0.617663 | 0.0594285 | 6.090101 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023280 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022500 | RBH | 0.0 | 0.0 | 0.695771 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022410 | RBH | 0.0 | 0.0 | 0.000000 |
