Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0563300 | OGI:04084080 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:28197592-28200125 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCGGCTGCGACCAGCGAGGGCAACCACCTCGTCGACGTCTCGACGACGACGACCATTCCGGCGCCCTCCACGGTGAGTGATTTCTCGCCCTCCCGTCCGCCGCTGCTTCCATGTTTCCAACTCCCTTTCGACATCGATTCTTCTTATCCGCCTCCCTTGTGGATTCGGATTTAGCTAATTAGGTCTCTTTCCCCCATTATTACCTTTTAAATTGGGATTGTGAGCAGCACAGAACGGCATGGCGACCTCTCCAGCTTATCCTCCCCCTGGATCCGGTGAGGGTTTCTCCAAACCGCCCGCTACAGGTAACGCTGCCTAAACTTGCCCTTAGTCTCAACCCCTGGATACAAAGCATGCGCTTCTTTACCTTTGAAAGTTCAAGAAATACAGTGAATAAGATAAGGCAGATTTATTTGTTTCGCTTTTGGTACAAAGATGTGATTTTTAAAAGAAACTAACAGGGTATAACAGGAATGCCTATTTTCTACTGTGATTTTTCGCTCAGTTGCATCACGTGAATAGGATTACAGTAAACGTGTTCTCAATCAGTATTTGATCTTTGCGTTTAGTCGTCTCTCCGGATCTGAAAGATTTGGCCTTCACCTGGTAATCATTTCGATGCATTCATTTCCCTATCCAGGAGGTTTTTGAACCTTGATCCACTTCAATCTCCAAGCAACAGTCTAAATTTAGCTTCAAATTTTGGGTTACCTGTATCTTTTTTTCTTTCATGAAATGGAATTATTTCCAAGCTTGTGGTGGCGTCTGTATTGGGTTTCTTTCTCCAAGTTATATTAAGTTTGGCTTCCAAAGAAGAACTTATATTTGCTTTACTACAAAAAAATCATCGGAAAAGGGCTCTTCTGTTGTACACCGATTTATTTATTTGATGCATGTATATAAATTGCTCTCTAATGCATTATAAAGCAAATAGCAATTGATGTTTACAATGATCAGATCCTTGTTCAAGTGGCCATTGGTCAGACCTCCCAGTTGATCTCCTTCACCGCATCTTGCATAGCCTTGAGCTCCCAGAAGCCCTTGCTGTAGCCGATGTCTGCAAGTCATGGTGCTGTGCTGCCATAGCTGCAGGTGTTCCTCGTTCTTGCACACCATGGCTAATGTCCTGGTCTGACAAGCCTCCACATGAACTGGAATATGATGTCTTGCTCAACAATTGCAAATGGCAGTGCCCTATGGGATGTGAATTCCACGACCTTGTCAATGGCCACAAGACTTATGAGGTTAATTTGCCACAAGTGGCTTGGGTTGGTGCATCTCATGGTTGGCTTGCTGCTGCTGATAATCTCTCTAATCTTTTGCTTTACAACCCATTTACCTTTACCACAATCCCTCTTCCGCCGATCACTGATCTAGGGTGTGTGGAGGCAGTCTATGACAGTGAAGGAAGCATTGTGAGATATCGCCTTGGAAAGCACAAGGAAAGTGATGCAAAATTCCTTGGTGTCTGGTTCTACTAGAAGCTTGTGCTGTCATGTGCTCCTTCTCTAGGTGGTGACTATGTCGTGATGATCATCCACAGCTCTGCTAATCGGGTCTCGTTTGCAAGTGCAATAGAAGGTCGCTGGCGATTGGCTTCAACTATAACCCAAGGTAGCGGCGACCGATACGCTGATTGCGTCTACCACAAAGGCAGGTTCTACACCCTGACTATGTATGGCGTTCTTGAGATGTTGGATCTTGATAATCCATGTGAACCAAGAAAGGAGATTTTTTTCACCGAAAGGAACACGGAAAACCCTTTAGTTTTCCTCAGATTCCTAGTGTCAACACCATGGGGTGATCTTTTGCAAATAAAGTTTTCTCGACGTGTTCATCGTACTAAAAGACTTGAGCTACGGCTATGCAAGATTGAGGTTGAAAATAACAGATTGGTAAGATTAAGATCTGCGGTTGCAGCAGCAGCCCTTCGGGAGCATGCGATATTTGTTGGACAAAATCATTCGGTGTGTTTGCCCATCAGGGATTTTCCAGAGCTTAGGTCCAGCTGTGTCTACTTCACAACACCTTGCTTGTGTAACGATGATCATTTTCCTTCTAGGCGGGAAGGTTGGAAAGGTGTAGGGATTTACGACTTGCAAAATCAGATATTTGAGGATGTTTTCCCTTCTTGTGAGCGTGGGTATTCGACCTATCTCCCTATTTCTGAAGTTTGGATCACCCCCAGCCCCGGCCTTTGAAAGAGTACCACATAGCCTTTTAGAAGTTTGCTGGAAGCGTGGAACGGATCATTGCTGCCGTGTGCTTACATTGACTTGTACTTAACTTATCAATGTTATTGTTATATATATTGTTTTGCCGCCTTTTAGAAGTTCGCTGGAAGCCTGGAACAGATCATTGTCGTGTGCTTACAATGACTTGTACTGAACTTATCAATGTTATAAGCATCCGAGTGTTGTAGCCCATGTTCTGTAAGCCGGTCCACTGTTCAACAACGATTGTAGATTGCCAACCATGTAAAAAAATGGCACTTCAGAGGTGCCCAACTCTTTCAAATTCTTCTCTAAGAAGC
More
|
||||||||||
| CDS seq | TCAGATCCTTGTTCAAGTGGCCATTGGTCAGACCTCCCAGTTGATCTCCTTCACCGCATCTTGCATAGCCTTGAGCTCCCAGAAGCCCTTGCTGTAGCCGATGTCTGCAAGTCATGGTGCTGTGCTGCCATAGCTGCAGGTGTTCCTCGTTCTTGCACACCATGGCTAATGTCCTGGTCTGACAAGCCTCCACATGAACTGGAATATGATGTCTTGCTCAACAATTGCAAATGGCAGTGCCCTATGGGATGTGAATTCCACGACCTTGTCAATGGCCACAAGACTTATGAGGTTAATTTGCCACAAGTGGCTTGGGTTGGTGCATCTCATGGTTGGCTTGCTGCTGCTGATAATCTCTCTAATCTTTTGCTTTACAACCCATTTACCTTTACCACAATCCCTCTTCCGCCGATCACTGATCTAGGGTGTGTGGAGGCAGTCTATGACAGTGAAGGAAGCATTGTGAGATATCGCCTTGGAAAGCACAAGGAAAGTGATGCAAAATTCCTTGGTGTCTGGTTCTACTAG
More
|
||||||||||
| Protein seq | SDPCSSGHWSDLPVDLLHRILHSLELPEALAVADVCKSWCCAAIAAGVPRSCTPWLMSWSDKPPHELEYDVLLNNCKWQCPMGCEFHDLVNGHKTYEVNLPQVAWVGASHGWLAAADNLSNLLLYNPFTFTTIPLPPITDLGCVEAVYDSEGSIVRYRLGKHKESDAKFLGVWFY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0563300 | OsNip_04t0563300-01 | Chr04 | 28197618 | 28200016 | + | RAP2018-11-26 | ||
| CDS seq | TCAGATCCTTGTTCAAGTGGCCATTGGTCAGACCTCCCAGTTGAAAATAACAGATTGGTAAGATTAAGATCTGCGGTTGCAGCAGCAGCCCTTCGGGAGCATGCGATATTTGTTGGACAAAATCATTCGGTGTGTTTGCCCATCAGGGATTTTCCAGAGCTTAGGTCCAGCTGTGTCTACTTCACAACACCTTGCTTGTGTAACGATGATCATTTTCCTTCTAGGCGGGAAGGTTGGAAAGGTGTAGGGATTTACGACTTGCAAAATCAGATATTTGAGGATGTTTTCCCTTCTTGTGAGCGTGGGTATTCGACCTATCTCCCTATTTCTGAAGTTTGGATCACCCCCAGCCCCGGCCTTTGA
More
|
|||||||
| Protein seq | SDPCSSGHWSDLPVENNRLVRLRSAVAAAALREHAIFVGQNHSVCLPIRDFPELRSSCVYFTTPCLCNDDHFPSRREGWKGVGIYDLQNQIFEDVFPSCERGYSTYLPISEVWITPSPGL |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0563300 | OsNip_04t0563300-02 | Chr04 | 28197647 | 28200106 | + | RAP2018-11-26 | ||
| CDS seq | TCAGATCCTTGTTCAAGTGGCCATTGGTCAGACCTCCCAGTTGATCTCCTTCACCGCATCTTGCATAGCCTTGAGCTCCCAGAAGCCCTTGCTGTAGCCGATGTCTGCAAGTCATGGTGCTGTGCTGCCATAGCTGCAGGTGTTCCTCGTTCTTGCACACCATGGCTAATGTCCTGGTCTGACAAGCCTCCACATGAACTGGAATATGATGTCTTGCTCAACAATTGCAAATGGCAGTGCCCTATGGGATGTGAATTCCACGACCTTGTCAATGGCCACAAGACTTATGAGGTTAATTTGCCACAAGTGGCTTGGGTTGGTGCATCTCATGGTTGGCTTGCTGCTGCTGATAATCTCTCTAATCTTTTGCTTTACAACCCATTTACCTTTACCACAATCCCTCTTCCGCCGATCACTGATCTAGGGTGTGTGGAGGCAGTCTATGACAGTGAAGGAAGCATTGTGAGATATCGCCTTGGAAAGCACAAGGAAAGTGATGCAAAATTCCTTGGTGTCTGGTTCTACTAG
More
|
|||||||
| Protein seq | SDPCSSGHWSDLPVDLLHRILHSLELPEALAVADVCKSWCCAAIAAGVPRSCTPWLMSWSDKPPHELEYDVLLNNCKWQCPMGCEFHDLVNGHKTYEVNLPQVAWVGASHGWLAAADNLSNLLLYNPFTFTTIPLPPITDLGCVEAVYDSEGSIVRYRLGKHKESDAKFLGVWFY |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0563300 | OsNip_04t0563300-03 | Chr04 | 28197592 | 28200125 | + | IsoSeq | ||
| CDS seq | CGGCTGCGACCAGCGAGGGCAACCACCTCGTCGACGTCTCGACGACGACGACCATTCCGGCGCCCTCCACGAACGGCATGGCGACCTCTCCAGCTTATCCTCCCCCTGGATCCGGTGAGGGTTTCTCCAAACCGCCCGCTACAGATCCTTGTTCAAGTGGCCATTGGTCAGACCTCCCAGTTGATCTCCTTCACCGCATCTTGCATAGCCTTGAGCTCCCAGAAGCCCTTG
More
|
|||||||
| Protein seq | RLRPARATTSSTSRRRRPFRRPPRTAWRPLQLILPLDPVRVSPNRPLQILVQVAIGQTSQLISFTASCIALSSQKPL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.297408 | 0.101778 | 0.640957 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0563300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023020 | RBH | 0.401560 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023750 | RBH | 0.0 | 0.0 | 0.490079 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023470 | RBH | 0.000000 | 3.424675 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023230 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023350 | RBH | 2.256756 | 0.0 | 2.856532 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0443400 | RBH | 1.412523 | 4.8871035 | 3.206108 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022190 | RBH | 0.124720 | 0.206069 | 0.379393 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0447200 | RBH | 1.725558 | 5.0220945 | 5.816595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022690 | RBH | 0.0 | 0.046621 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022510 | RBH | 0.534541 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022630 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023010 | RBH | 0.0 | 0.343498 | 0.090747 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023220 | RBH | 0.081885 | 5.149080 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022440 | RBH | 0.096505 | 0.0 | 0.992830 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022350 | RBH | 0.0 | 0.000000 | 2.798600 |
