Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0560600 | OGI:04083690 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:28079507-28082320 | ||||||||
| Gene Symbol | ESL4, CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4 | ||||||||||
| DNA seq | GCGGTAGGTAAATTTCTTGATTCTATATATGTTTTTATTTGCATACTGGTTATCAACAAATACACATACTAGATCAAACCACAACAGCCAAAGCAACTGCTTTTGGGGTTAACTTTTTTGCGTTTCATCTGCTTGCAGCATATACTCGAACATGTCTATACAAATTTATTCACAAAGAGACCAGAGAGTTTCCTCAGGTTTGTATTCCTTTCCTCATCATTTCCACAAACTCTTCATAGTCAATTCTCCCGTCCTGTGAATTCGATGGAGGAAATAATTAAATCCATGGGAATGACCCTAATTAGTGAAAATAAAATACTTTAGGTATGCTTTACCTTGTCTTTGTCAACTTCATCCAGTACTTGTTTAATGTTTGCTTCATCACCCATTCCGTACTCTGCCATGGCTTGTTCCAGTTCATCTCTTGTTATGTACCTGGAATTGTTTTTCATGGTCTCTTGTTAATATATACTGATTTTTTAACAAACGAGTTTATAGCAAGAAAAATATGATGCAAGGAAAGCATGTGTTAGACATCGTTACACAATGAACATGATTGTTGCGCAGAACAAGTTCCAGTGTTGGTCAATTTAGAGCTCTTTATTCATGGTGCTGAACGAGATAAAAGGATGTGCATTGGCTAACAAAATTTATTTTACCCGCTGTTATCTTTGTCAAAATGTTGAAATGCACGAAGTAAATCCTCCTCCTTTTCCAGTTTATGCTTATTTATCATAGCTGTGAGGAACTCCGAGTAATCAATGCTGCCACTCTTGTCTACGTCAACCTGTACCACAGTATCACTAGTAAAATCCTTTTGTAAACTAAACCTGCAGCGAAGAGTTAGCAAAAGCAAATGATCTTACTGCTTCCATAAGCTTCTGAACCTCGGCTTCACTAATTCTTGATCCTAGCTTTGTCAGACCAACCTTCAGTTCTTCAACCGTGATTGTGCCACTTCTGTCTGTATCCATGTTATTGAACATCTGTTTCAAGCCCTTGATTTCCTCTGGTGATAGGTTCTCTGCAATTACCTTGAGATGAAAGGAGGCAGCGTGTCAATTTGATTTTAGCCAAAGCATAGTAGTTATCCCTGTTAAGGAGGATTCTCACCTTAAGAGCTAATTGCTTTAACTTGTTCATTGCCTTGAATTGCTTCATTCTTGATAGGACTGCGCTATCGATAGGTCTGTCAGATGCACCGCCTTCTTTGAGCCATCGATGTTCTGCAGCATGGAGACATCCATTTAAAGAGTTGGCTACACTGTATGTATATATACAGTTGCAGATAAATTTTACATTCATAACCGCAGATTAGAATAGCGAAACACAATTCAGGTGTGCTACCTAAGGCCTGCGATGCAGTAATCCTCTTCTGGGGATCTCTATGTAACATTTGTCTGATAAGATCCTTTGCACTTTCAGATATCGAAGGCCACGGGCTGGTACTGAAATCAACTTGGTTGACCAGTATAGCATCGAATATGCCTTTCTCTGTCTCTGCGCAGATATTCAAATTTGACAATTATCTCCACGATATACTTGATAGAATGTAGCAAAATTAGCCAAAGAGTAAATATGTACTATGGATATTTACCTGCCCAGAATGGGGGCGTCCCGCATAGAAGGATATACAATATCACCCCAGCGCTCCAGATGTCGGCTTCTTTCCCATAATTTCGTTGTAACACTTCTGGCGCCACATAATAAGCACTTCCGACAATGTCCTTGTACACTTTACCTGCATTTGTTGTTTTGTTGTTGGGGAAATTTTACCTTAGCTTGTACATATCTTGTTATGGCGAGCTAAGGTACGTGCATTATCTCTCGCAAGATCTTTCAACATGCATGATCGATGCATTTCTGCATCTGCTTTGATATTGTACGTTTCTACTCTTTAGACCCGTGCATTTCTAACAGCCAAATTAACTCATGGTGTTGATAAAGGGGGGAAAAGAAAGAAAGAAAGAGGTAGTGTAGCTTATGTGTGATATCGCGACCCTGACCTTCTTCGATGAAGACGGAGAGTCCGAAGTCGATGGCCTTGAGCGGCGCGTCGTCGTCGGCGCTGGCGAGCAGGAAGTTCTCCGGCTTGAGGTCGCGGTGTATGACCCCCATGAAGTGGCAGACGTGAACGACGGTGAGGATGTCCCGGCACACGGCAGCGGCCTGCCGCTCGGAGTAGCTCCCCTTGGCCGTGATGCGGTCGAACAGCTCGCCGCCGGAGCAGAACTCCATGACGAGGTGCACGTGGTCGTTGTCCTCGTACGCGCCCCTGAACTCCGCGATGTTGGGCTGCCCGCTGAGGTGCTGCAGGATGGTGATCTCCCGGCGCACGTCGTCCACGTCGGTGCGCCGCACCAGCTTCCGCTTCGACACCGACTTGCACGCGTACCGGTTCCCCGTCGCGCGCTCCGTGCACAGGTACGTCGTCCCGAACTGCCCGCTCCCCAGCTTCCGGTCCAGCTGGTACAGCGACCGCACGCTCACCATCGCCCTCTGCAGCACGGGGCCCATCTCCCCGCCGCCGCCGGACGCCCTCCGGGACAGCGCCCCCGCCGCCGAAGACGAGCCCGTCGGCGGCCGGTGCGGCGGGGCCCCGTGCCTCGGGAAGCTCGGCCGCCGCCACGTCCCCGGCTCATCGCCGCCACGCGCCTTGCTGCGCTCCGCGGTCGACGCCGGCCGCCGCATCGTGCCCGACGTGATGGGTATCTCGTACGTCTTGGTGAAGCAGTTGCCCATTGCAAAGCCTCCTCGTTTCCTTTCCTTCTCCTGGGGTGGCGCCGAGACGAAGCGAGGGTGGAATGGTGAGTT
More
|
||||||||||
| CDS seq | ATGGGCAACTGCTTCACCAAGACGTACGAGATACCCATCACGTCGGGCACGATGCGGCGGCCGGCGTCGACCGCGGAGCGCAGCAAGGCGCGTGGCGGCGATGAGCCGGGGACGTGGCGGCGGCCGAGCTTCCCGAGGCACGGGGCCCCGCCGCACCGGCCGCCGACGGGCTCGTCTTCGGCGGCGGGGGCGCTGTCCCGGAGGGCGTCCGGCGGCGGCGGGGAGATGGGCCCCGTGCTGCAGAGGGCGATGGTGAGCGTGCGGTCGCTGTACCAGCTGGACCGGAAGCTGGGGAGCGGGCAGTTCGGGACGACGTACCTGTGCACGGAGCGCGCGACGGGGAACCGGTACGCGTGCAAGTCGGTGTCGAAGCGGAAGCTGGTGCGGCGCACCGACGTGGACGACGTGCGCCGGGAGATCACCATCCTGCAGCACCTCAGCGGGCAGCCCAACATCGCGGAGTTCAGGGGCGCGTACGAGGACAACGACCACGTGCACCTCGTCATGGAGTTCTGCTCCGGCGGCGAGCTGTTCGACCGCATCACGGCCAAGGGGAGCTACTCCGAGCGGCAGGCCGCTGCCGTGTGCCGGGACATCCTCACCGTCGTTCACGTCTGCCACTTCATGGGGGTCATACACCGCGACCTCAAGCCGGAGAACTTCCTGCTCGCCAGCGCCGACGACGACGCGCCGCTCAAGGCCATCGACTTCGGACTCTCCGTCTTCATCGAAGAAGGTAAAGTGTACAAGGACATTGTCGGAAGTGCTTATTATGTGGCGCCAGAAGTGTTACAACGAAATTATGGGAAAGAAGCCGACATCTGGAGCGCTGGGGTGATATTGTATATCCTTCTATGCGGGACGCCCCCATTCTGGGCAGAGACAGAGAAAGGCATATTCGATGCTATACTGGTCAACCAAGTTGATTTCAGTACCAGCCCGTGGCCTTCGATATCTGAAAGTGCAAAGGATCTTATCAGACAAATGTTACATAGAGATCCCCAGAAGAGGATTACTGCATCGCAGGCCTTAGAACATCGATGGCTCAAAGAAGGCGGTGCATCTGACAGACCTATCGATAGCGCAGTCCTATCAAGAATGAAGCAATTCAAGGCAATGAACAAGTTAAAGCAATTAGCTCTTAAGGTAATTGCAGAGAACCTATCACCAGAGGAAATCAAGGGCTTGAAACAGATGTTCAATAACATGGATACAGACAGAAGTGGCACAATCACGGTTGAAGAACTGAAGGTTGGTCTGACAAAGCTAGGATCAAGAATTAGTGAAGCCGAGGTTCAGAAGCTTATGGAAGCAGTTGACGTAGACAAGAGTGGCAGCATTGATTACTCGGAGTTCCTCACAGCTATGATAAATAAGCATAAACTGGAAAAGGAGGAGGATTTACTTCGTGCATTTCAACATTTTGACAAAGATAACAGCGGGTACATAACAAGAGATGAACTGGAACAAGCCATGGCAGAGTACGGAATGGGTGATGAAGCAAACATTAAACAAGTACTGGATGAAGTTGACAAAGACAAGGACGGGAGAATTGACTATGAAGAGTTTGTGGAAATGATGAGGAAAGGAATACAAACCTGA
More
|
||||||||||
| Protein seq | MGNCFTKTYEIPITSGTMRRPASTAERSKARGGDEPGTWRRPSFPRHGAPPHRPPTGSSSAAGALSRRASGGGGEMGPVLQRAMVSVRSLYQLDRKLGSGQFGTTYLCTERATGNRYACKSVSKRKLVRRTDVDDVRREITILQHLSGQPNIAEFRGAYEDNDHVHLVMEFCSGGELFDRITAKGSYSERQAAAVCRDILTVVHVCHFMGVIHRDLKPENFLLASADDDAPLKAIDFGLSVFIEEGKVYKDIVGSAYYVAPEVLQRNYGKEADIWSAGVILYILLCGTPPFWAETEKGIFDAILVNQVDFSTSPWPSISESAKDLIRQMLHRDPQKRITASQALEHRWLKEGGASDRPIDSAVLSRMKQFKAMNKLKQLALKVIAENLSPEEIKGLKQMFNNMDTDRSGTITVEELKVGLTKLGSRISEAEVQKLMEAVDVDKSGSIDYSEFLTAMINKHKLEKEEDLLRAFQHFDKDNSGYITRDELEQAMAEYGMGDEANIKQVLDEVDKDKDGRIDYEEFVEMMRKGIQT |
||||||||||
| Function | Calcium-dependent protein kinase 12 [UniProtKB/Swiss-Prot:Q7XSQ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0560600 | OsNip_04t0560600-01 | Chr04 | 28079507 | 28082320 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGCAACTGCTTCACCAAGACGTACGAGATACCCATCACGTCGGGCACGATGCGGCGGCCGGCGTCGACCGCGGAGCGCAGCAAGGCGCGTGGCGGCGATGAGCCGGGGACGTGGCGGCGGCCGAGCTTCCCGAGGCACGGGGCCCCGCCGCACCGGCCGCCGACGGGCTCGTCTTCGGCGGCGGGGGCGCTGTCCCGGAGGGCGTCCGGCGGCGGCGGGGAGATGGGCCCCGTGCTGCAGAGGGCGATGGTGAGCGTGCGGTCGCTGTACCAGCTGGACCGGAAGCTGGGGAGCGGGCAGTTCGGGACGACGTACCTGTGCACGGAGCGCGCGACGGGGAACCGGTACGCGTGCAAGTCGGTGTCGAAGCGGAAGCTGGTGCGGCGCACCGACGTGGACGACGTGCGCCGGGAGATCACCATCCTGCAGCACCTCAGCGGGCAGCCCAACATCGCGGAGTTCAGGGGCGCGTACGAGGACAACGACCACGTGCACCTCGTCATGGAGTTCTGCTCCGGCGGCGAGCTGTTCGACCGCATCACGGCCAAGGGGAGCTACTCCGAGCGGCAGGCCGCTGCCGTGTGCCGGGACATCCTCACCGTCGTTCACGTCTGCCACTTCATGGGGGTCATACACCGCGACCTCAAGCCGGAGAACTTCCTGCTCGCCAGCGCCGACGACGACGCGCCGCTCAAGGCCATCGACTTCGGACTCTCCGTCTTCATCGAAGAAGGTAAAGTGTACAAGGACATTGTCGGAAGTGCTTATTATGTGGCGCCAGAAGTGTTACAACGAAATTATGGGAAAGAAGCCGACATCTGGAGCGCTGGGGTGATATTGTATATCCTTCTATGCGGGACGCCCCCATTCTGGGCAGAGACAGAGAAAGGCATATTCGATGCTATACTGGTCAACCAAGTTGATTTCAGTACCAGCCCGTGGCCTTCGATATCTGAAAGTGCAAAGGATCTTATCAGACAAATGTTACATAGAGATCCCCAGAAGAGGATTACTGCATCGCAGGCCTTAGAACATCGATGGCTCAAAGAAGGCGGTGCATCTGACAGACCTATCGATAGCGCAGTCCTATCAAGAATGAAGCAATTCAAGGCAATGAACAAGTTAAAGCAATTAGCTCTTAAGGTAATTGCAGAGAACCTATCACCAGAGGAAATCAAGGGCTTGAAACAGATGTTCAATAACATGGATACAGACAGAAGTGGCACAATCACGGTTGAAGAACTGAAGGTTGGTCTGACAAAGCTAGGATCAAGAATTAGTGAAGCCGAGGTTCAGAAGCTTATGGAAGCAGTTGACGTAGACAAGAGTGGCAGCATTGATTACTCGGAGTTCCTCACAGCTATGATAAATAAGCATAAACTGGAAAAGGAGGAGGATTTACTTCGTGCATTTCAACATTTTGACAAAGATAACAGCGGGTACATAACAAGAGATGAACTGGAACAAGCCATGGCAGAGTACGGAATGGGTGATGAAGCAAACATTAAACAAGTACTGGATGAAGTTGACAAAGACAAGGACGGGAGAATTGACTATGAAGAGTTTGTGGAAATGATGAGGAAAGGAATACAAACCTGA
More
|
|||||||
| Protein seq | MGNCFTKTYEIPITSGTMRRPASTAERSKARGGDEPGTWRRPSFPRHGAPPHRPPTGSSSAAGALSRRASGGGGEMGPVLQRAMVSVRSLYQLDRKLGSGQFGTTYLCTERATGNRYACKSVSKRKLVRRTDVDDVRREITILQHLSGQPNIAEFRGAYEDNDHVHLVMEFCSGGELFDRITAKGSYSERQAAAVCRDILTVVHVCHFMGVIHRDLKPENFLLASADDDAPLKAIDFGLSVFIEEGKVYKDIVGSAYYVAPEVLQRNYGKEADIWSAGVILYILLCGTPPFWAETEKGIFDAILVNQVDFSTSPWPSISESAKDLIRQMLHRDPQKRITASQALEHRWLKEGGASDRPIDSAVLSRMKQFKAMNKLKQLALKVIAENLSPEEIKGLKQMFNNMDTDRSGTITVEELKVGLTKLGSRISEAEVQKLMEAVDVDKSGSIDYSEFLTAMINKHKLEKEEDLLRAFQHFDKDNSGYITRDELEQAMAEYGMGDEANIKQVLDEVDKDKDGRIDYEEFVEMMRKGIQT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.110820 | 1.003687 | 0.290036 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0685900 | SBH | 0.620850 | 0.749628 | 2.386290 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47300 | RBH | 0.533565 | 0.681433 | 0.074581 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0560600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022860 | RBH | 0.305264 | 4.882331 | 0.902796 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023590 | RBH | 0.000000 | 0.976593 | 0.505604 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023310 | RBH | 0.554018 | 1.194143 | 2.733720 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023070 | RBH | 0.112149 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023200 | RBH | 3.729987 | 3.901187 | 1.028697 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0440900 | RBH | 2.475965 | 5.078234 | 0.5098365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022040 | RBH | 0.437716 | 0.000000 | 0.104895 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0444500 | RBH | 1.559623 | 3.0695465 | 1.111357 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022530 | RBH | 0.110177 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022360 | RBH | 0.391169 | 1.119825 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022480 | RBH | 2.322212 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022860 | RBH | 0.277680 | 0.000000 | 0.123280 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023070 | RBH | 0.289180 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022280 | RBH | 0.267856 | 0.000000 | 0.969804 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022200 | RBH | 0.482779 | 0.000000 | 0.441340 |
