Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0548400 | OGI:04082090 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:27460855-27461595 | ||||||||
| Gene Symbol | RLCK156, OsRLCK156 | ||||||||||
| DNA seq | GAACAATCATTGGCCCAAGTCTCGTACGGAAAACTTGGTCCAGACATACATAAAACAACATCATTGTCCTGTTCATATGAGTTCCTCTAGGTTGGGTGGAAACTATACATGCTTGTTTCTCCATTAGTGTACATCATTCTCACATTTCTGGATTTCCCCAGTACAAGCTCTGGTGTATGCTTGAGCACTAGGGATAACAGATGGATAATACATTTATAAATATTAATGCTATCTTGCTATAACGAAACACTTTCTAAATAGGATGCCGGTGACCAATGTGCACCCTGTCATCTTGATATCTCTTCAAGCATTTTGAGTATACGCTTGGTATCTGGTCTCAAGGATGGTGATGGGTTACAGCAAGCAGTTGCCAGTTCAAAGAATGCATTTAGGTTCTGCTCCTTGCCTGAGTTCTTACTTTGCTTGACTAGCTCAGAACTGAATGCATCCGATATCTTCCTCTCCAGAACTAGATCTTTGAAAGAGGAAGGCAGGTGGATGTCACGGGCATTGGGTGAGCTACTGTTTGCTGCCTCCTTTTGAGCAAGCATCTCCAGAAGAATTACCCCCAAGCTGTAGATATCACTCTCCCTGGTGGCTTCTCTCATCTTGATCAGCTCTGGAGCCTTGTAGCCCTGCATTGCAGATGCTTCAAGCATCTGTTGAGCGGCAGCAGGATTCAGCAGAAGGTAGAGGCCAAAGTCGGATATCCTTGGCTGGAAATCGGCATCAAGCATAATG
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| CDS seq | ATTATGCTTGATGCCGATTTCCAGCCAAGGATATCCGACTTTGGCCTCTACCTTCTGCTGAATCCTGCTGCCGCTCAACAGATGCTTGAAGCATCTGCAATGCAGGGCTACAAGGCTCCAGAGCTGATCAAGATGAGAGAAGCCACCAGGGAGAGTGATATCTACAGCTTGGGGGTAATTCTTCTGGAGATGCTTGCTCAAAAGGAGGCAGCAAACAGTAGCTCACCCAATGCCCGTGACATCCACCTGCCTTCCTCTTTCAAAGATCTAGTTCTGGAGAGGAAGATATCGGATGCATTCAGTTCTGAGCTAGTCAAGCAAAGTAAGAACTCAGGCAAGGAGCAGAACCTAAATGCATTCTTTGAACTGGCAACTGCTTGCTGTAACCCATCACCATCCTTGAGACCAGATACCAAGCGTATACTCAAAATGCTTGAAGAGATATCAAGATGA
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| Protein seq | IMLDADFQPRISDFGLYLLLNPAAAQQMLEASAMQGYKAPELIKMREATRESDIYSLGVILLEMLAQKEAANSSSPNARDIHLPSSFKDLVLERKISDAFSSELVKQSKNSGKEQNLNAFFELATACCNPSPSLRPDTKRILKMLEEISR |
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| Function | Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [UniProtKB/Swiss-Prot:Q9SCT4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0548400 | OsNip_04t0548400-01 | Chr04 | 27460855 | 27461595 | - | RAP2018-11-26 | ||
| CDS seq | ATTATGCTTGATGCCGATTTCCAGCCAAGGATATCCGACTTTGGCCTCTACCTTCTGCTGAATCCTGCTGCCGCTCAACAGATGCTTGAAGCATCTGCAATGCAGGGCTACAAGGCTCCAGAGCTGATCAAGATGAGAGAAGCCACCAGGGAGAGTGATATCTACAGCTTGGGGGTAATTCTTCTGGAGATGCTTGCTCAAAAGGAGGCAGCAAACAGTAGCTCACCCAATGCCCGTGACATCCACCTGCCTTCCTCTTTCAAAGATCTAGTTCTGGAGAGGAAGATATCGGATGCATTCAGTTCTGAGCTAGTCAAGCAAAGTAAGAACTCAGGCAAGGAGCAGAACCTAAATGCATTCTTTGAACTGGCAACTGCTTGCTGTAACCCATCACCATCCTTGAGACCAGATACCAAGCGTATACTCAAAATGCTTGAAGAGATATCAAGATGA
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| Protein seq | IMLDADFQPRISDFGLYLLLNPAAAQQMLEASAMQGYKAPELIKMREATRESDIYSLGVILLEMLAQKEAANSSSPNARDIHLPSSFKDLVLERKISDAFSSELVKQSKNSGKEQNLNAFFELATACCNPSPSLRPDTKRILKMLEEISR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.490945 | 1.156877 | 0.805285 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0655800 | RBH | 0.444189 | 0.692838 | 4.371552 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46320 | RBH | 0.204886 | 0.402914 | 0.214329 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0548400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022020 | RBH | 0.0 | 2.073379 | 2.428074 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022760 | RBH | 0.0 | 1.500526 | 0.460665 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022480 | RBH | 0.258372 | 5.471070 | 2.115711 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022230 | RBH | 0.0 | 0.117456 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022400 | RBH | 0.0 | 5.481333 | 6.177727 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0432600 | RBH | 1.958753 | 4.424592 | 5.9960695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021220 | RBH | 0.0 | 0.112088 | 0.592324 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0433000 | RBH | 2.2204125 | 1.797482 | 16.7674435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021710 | RBH | 0.114635 | 0.164482 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021540 | RBH | 0.235812 | 3.905672 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021630 | RBH | 0.0 | 15.033930 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022050 | RBH | 0.128809 | 0.000000 | 0.424556 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022230 | RBH | 0.0 | 2.907063 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021460 | RBH | 0.000000 | 0.924357 | 1.233913 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021390 | RBH | 0.0 | 0.0 | 2.808157 |
