Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0522500 | OGI:04078770 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:26130711-26134356 | ||||||||
| Gene Symbol | GA2OX6, OsGA2ox6 | ||||||||||
| DNA seq | GGTTTAATCACTTGTATAGTACTACCTTGCCAATTACAATCTACAAACCAAAAAAGGCCACGGAAATGATAAGGAAAGAACCTCCAACCCCGAACACCGCACACACAATTGTACAGTGAGATGGATTGATGGTACGGTCGAGTTCACATCGACCATAAATTATAACGAACATATATAGAACAAGCGGTTGCTGTCATTGATGCGATCATTATTGTACTGAAGAATGCTTGAAAAAGTTTGGGAGGCCAATCTTTTTCCCGGTTGTCCTGACGTCTTCCTGCACCTTCTTCCTGTACTCCCCGAAGGTGAAGGCCCTGTATGGCGATGGCTCGCCGCATGTCCCGACAAGCGAGTCGTAGGACGGGCACAGGAAGTAGGCCACCGATAGCCGGTCCGTCTTGGCGTTGGCCACCACTTTATGCTCCACGCTCTTGTACCTGTTGTTGCTCCACGCCTATAGCAGAGCAGAGAATTAATTAGCTAATGATTCATGGCCTCATGGGACATCGAAAGTTAAAATCAATGCATCCACACAAAGACACGTCGATCTGATGACATCTCTGTTTCTCCCGCCTTGGTGGTCAAAGCTGGTACACACAATGATGCCCGAGCGAGCTAATCGGCGGACTGTTACCTGAAACAGATCGCCGATGTTGACGACGAGGGCGTCGGGGCGTGGCCTGACGGCCACCCACCGGGAGTCCTTCATCAGGTGCAGGCCCCCGACCTGGTCCTGGCACAGGACGGTGAGGAAGTCGCTGTCCGTGTGCGGCACCAGCCCGAACGTGTCCGCCGCGAAAGGGCACGCCGGGTACCGGTTGAGCCGCAGGAAGCACGTCGTCTCGTCGCACCCCGCAGGGAACCACGGCGCCGCCGATGCCCCGCCGCCTCCGCGCCCGGTCAGCTCCTCCGCCAGCGCCGCTGCCACCGTGTTCGCCACCCGCGACATCGCTTCGGCCACCTCCTGCATCACGCCCCTGCACGCCGTCACCACCACAACAACCTCCGCTTGTTAGTAATCGAGTACAACCACTCGATCATAATCCGTACTAGAGTCCATGTGCACCAACCGGCAGTAAAACAGTAAAAGTACTGATCAGCCAGGTTAATAACCTCTCGGCTAACCGGTAGGACAACGGAAACCGGTTATATATATGTTATTCACTGTTGATCCGATAAAGAACTAATAGAAGCTTAATTAGATTTCTTTATAACCTGATACGACGCTAGAAACCTTATCACCATCCAACTTTAGTGGTCAGTTTAGATTAATCTACAAAGCAACTGTGAAGGGGACATGATTTGGTAGGGTCAACTAAATATTCCTCTGTTTTTAGAATGTACGAGATGATGCTGATATTTAAACGTGATGTTTTATTAAAATATTATATAAATATGTAAACGACACGTAAAGTACCTTTAATAATAGAATATGCCATAAAAAATACATATTTTTCGCTAACTTTTAAGTAAGATAAACAGTCAAACGTATTATCCAAATATCAATTAACGCTATATATAAAGAGGAATCAGTAGCAAGTCAATGTTCATACAAGTTAGTCATTGGTGTCGCTAGCAAGCATAGGATCCATAAGCTCAGTGACCTAGCTAGTGGCTCAATTTACTGGATCTACCCTCGATTTAGACGGGAAAGGTTATATATTAGAGGTTACAACTCCGATTTATGCATCCTCCTACGCCTACGTGTGTGACTCAGATATTTCTTGTGCCCGAGATATTTCTCACAGTATTTCCTTCACTGTGTATGAAAGCTAGACACGCCTCGGAATGTACACGACACACAATATAATACTATCTCCATATTTTAATGTATGACGCCATTGACTTTTTATCTAACGTTTGACCATTCGTCTTATTAAAAAAATTTTATGTAATTATCATTTATTTTATTATGACTTGATTCGTTATCAAATGTCCTTTAAGTATGACATAAATATTTTCATATTTGCACAAAAATTTCGAATAAAACAAATGGTCAACGGCGTCATACATTAAAATAATGAGGGAGTAATTAATAAGCGAGTATATATATCACCGACGTGGGGGACGGCGTTGGTAGGCTGGTTCGATGGACACGAAGGCGTTAAATTCGGTTAGTGTACTAAAAGGCACGCATGTTTCGTGGGCACATACGCCACCGCACACATGATATCATCACTCATTGACTCACATGAGCGGAATATATACAGGTGACAGGCAAGTTTGCTGCTCGCTTGGAGCTTATTGTAGACCCCAGAGACTTTTATAGCTTAATTTGTTCGATCGTAAGGACAGCGAGCACGCGCGAATATAGCAGCGATCGCGCTCGCTCGCGTATGTGTCAGACAGTCGCGGCGAGTACGTGTACACGAGAAATATCCCGTGAACGATCGCAATTAACAGAGATACCTCCTTTTCTGATGAGCAGTGCCCTGTTAGCGCCTTTTGTACTAAGCTAGTACTAGTACTTAGACGCTGACACTGTAACTGTGACGGCCCGGTCTAGCTAGCTACAGAGCTTGTACGTACGAGTGTGAAACCGCAAGTTACTCCTACCTCCATCATATAATATATCAATCTAAAACTGGATGAGATCTATCCTACCTCAAAATATAGCAACACTAGAATTAGATAAGATATATTCGAGTCCAACGAATCTAGACAATCCCTTCTCCAGTTTCATTGGATTGGATATGTCTCGTCTAGTCCTAAATTACTAGTATATTTTAAGACGAAGGGAGTAGTTATAACTAAAAACAACTTAATTGCCAATTTTGTTAGCATATATCCAGCTTGTCACATGCATGCATATGCCGATATGCAAATACTCACGGATCGCCTCACCGGCCTGTTTCATCAAAATGACTAAAGTGTGCTTGCGCGAGCGAGCTAATTAAGAAAAACCAAGCTAACATATAAAAAGCAACATGGAGTACTGCAGTGCACACTGTACACTACTCCACTACGTATATTAACGAGTATATACGAGCTAGTAATTAAGCATAGTACGTACTGTACGTACCTTAAGGAGGTGAGGTCTCCAAAGTCGCAATCCGCCCCGGAGATGCTGGCGAGCGGGACGTGGAACGCCTCCGACCACGAGAGGTGGCGGAGCGACGTGGCGGTGGGGTTGCCCCACCGGTACGAGCCGTTGAGCAGGCCGGCCTTCTCCTTGGTTTCGAACGGCAGACGGAACAGCCTTGCCTGCTCCCGCCTCATCTCCTCCATCAGCTCCCGGCCCACGCCGTGGTTGGTCAGCTGGAAGAACCCCCACTCCGACGCCGCCCTCGCCATGGCGCCCGCGCACGCCTTCCTCTCCCCCGCGCCGCCCCTCGTCAGCCGCTCCAGGTCCACCATCGGCAGGTCGCGCTCCAGCACGGCGCCGCCCGAGCCGACCATCTGCACAGCCGGCGGCGCAATGCCACCGTCGCGGTCGCGGCGGAGCAGCGCCAGCGCGCGGTAGCTGTCGGCCAGAGGCGGGTCGATGGCGATGTCGGCGAAGGCCGGCATGGTCGGGAAGACGTCTACGTAGGCGAGAGGCTTATCTGTGTCTGTACAGCCGTGTACGCGTCGCACACGCAGTTGCACGTATGCTAAGCTAGCTTCTGGCTATCGCAGAGCGCGCGTCGACGAATGCTGCTGGGAT
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| CDS seq | ATGCCGGCCTTCGCCGACATCGCCATCGACCCGCCTCTGGCCGACAGCTACCGCGCGCTGGCGCTGCTCCGCCGCGACCGCGACGGTGGCATTGCGCCGCCGGCTGTGCAGATGGTCGGCTCGGGCGGCGCCGTGCTGGAGCGCGACCTGCCGATGGTGGACCTGGAGCGGCTGACGAGGGGCGGCGCGGGGGAGAGGAAGGCGTGCGCGGGCGCCATGGCGAGGGCGGCGTCGGAGTGGGGGTTCTTCCAGCTGACCAACCACGGCGTGGGCCGGGAGCTGATGGAGGAGATGAGGCGGGAGCAGGCAAGGCTGTTCCGTCTGCCGTTCGAAACCAAGGAGAAGGCCGGCCTGCTCAACGGCTCGTACCGGTGGGGCAACCCCACCGCCACGTCGCTCCGCCACCTCTCGTGGTCGGAGGCGTTCCACGTCCCGCTCGCCAGCATCTCCGGGGCGGATTGCGACTTTGGAGACCTCACCTCCTTAAGGGGCGTGATGCAGGAGGTGGCCGAAGCGATGTCGCGGGTGGCGAACACGGTGGCAGCGGCGCTGGCGGAGGAGCTGACCGGGCGCGGAGGCGGCGGGGCATCGGCGGCGCCGTGGTTCCCTGCGGGGTGCGACGAGACGACGTGCTTCCTGCGGCTCAACCGGTACCCGGCGTGCCCTTTCGCGGCGGACACGTTCGGGCTGGTGCCGCACACGGACAGCGACTTCCTCACCGTCCTGTGCCAGGACCAGGTCGGGGGCCTGCACCTGATGAAGGACTCCCGGTGGGTGGCCGTCAGGCCACGCCCCGACGCCCTCGTCGTCAACATCGGCGATCTGTTTCAGGCGTGGAGCAACAACAGGTACAAGAGCGTGGAGCATAAAGTGGTGGCCAACGCCAAGACGGACCGGCTATCGGTGGCCTACTTCCTGTGCCCGTCCTACGACTCGCTTGTCGGGACATGCGGCGAGCCATCGCCATACAGGGCCTTCACCTTCGGGGAGTACAGGAAGAAGGTGCAGGAAGACGTCAGGACAACCGGGAAAAAGATTGGCCTCCCAAACTTTTTCAAGCATTCTTCAGTACAATAA
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| Protein seq | MPAFADIAIDPPLADSYRALALLRRDRDGGIAPPAVQMVGSGGAVLERDLPMVDLERLTRGGAGERKACAGAMARAASEWGFFQLTNHGVGRELMEEMRREQARLFRLPFETKEKAGLLNGSYRWGNPTATSLRHLSWSEAFHVPLASISGADCDFGDLTSLRGVMQEVAEAMSRVANTVAAALAEELTGRGGGGASAAPWFPAGCDETTCFLRLNRYPACPFAADTFGLVPHTDSDFLTVLCQDQVGGLHLMKDSRWVAVRPRPDALVVNIGDLFQAWSNNRYKSVEHKVVANAKTDRLSVAYFLCPSYDSLVGTCGEPSPYRAFTFGEYRKKVQEDVRTTGKKIGLPNFFKHSSVQ |
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| Function | Gibberellin 2-beta-dioxygenase 6 [UniProtKB/Swiss-Prot:Q7XP65] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0522500 | OsNip_04t0522500-01 | Chr04 | 26130711 | 26134356 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGGCCTTCGCCGACATCGCCATCGACCCGCCTCTGGCCGACAGCTACCGCGCGCTGGCGCTGCTCCGCCGCGACCGCGACGGTGGCATTGCGCCGCCGGCTGTGCAGATGGTCGGCTCGGGCGGCGCCGTGCTGGAGCGCGACCTGCCGATGGTGGACCTGGAGCGGCTGACGAGGGGCGGCGCGGGGGAGAGGAAGGCGTGCGCGGGCGCCATGGCGAGGGCGGCGTCGGAGTGGGGGTTCTTCCAGCTGACCAACCACGGCGTGGGCCGGGAGCTGATGGAGGAGATGAGGCGGGAGCAGGCAAGGCTGTTCCGTCTGCCGTTCGAAACCAAGGAGAAGGCCGGCCTGCTCAACGGCTCGTACCGGTGGGGCAACCCCACCGCCACGTCGCTCCGCCACCTCTCGTGGTCGGAGGCGTTCCACGTCCCGCTCGCCAGCATCTCCGGGGCGGATTGCGACTTTGGAGACCTCACCTCCTTAAGGGGCGTGATGCAGGAGGTGGCCGAAGCGATGTCGCGGGTGGCGAACACGGTGGCAGCGGCGCTGGCGGAGGAGCTGACCGGGCGCGGAGGCGGCGGGGCATCGGCGGCGCCGTGGTTCCCTGCGGGGTGCGACGAGACGACGTGCTTCCTGCGGCTCAACCGGTACCCGGCGTGCCCTTTCGCGGCGGACACGTTCGGGCTGGTGCCGCACACGGACAGCGACTTCCTCACCGTCCTGTGCCAGGACCAGGTCGGGGGCCTGCACCTGATGAAGGACTCCCGGTGGGTGGCCGTCAGGCCACGCCCCGACGCCCTCGTCGTCAACATCGGCGATCTGTTTCAGGCGTGGAGCAACAACAGGTACAAGAGCGTGGAGCATAAAGTGGTGGCCAACGCCAAGACGGACCGGCTATCGGTGGCCTACTTCCTGTGCCCGTCCTACGACTCGCTTGTCGGGACATGCGGCGAGCCATCGCCATACAGGGCCTTCACCTTCGGGGAGTACAGGAAGAAGGTGCAGGAAGACGTCAGGACAACCGGGAAAAAGATTGGCCTCCCAAACTTTTTCAAGCATTCTTCAGTACAATAA
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| Protein seq | MPAFADIAIDPPLADSYRALALLRRDRDGGIAPPAVQMVGSGGAVLERDLPMVDLERLTRGGAGERKACAGAMARAASEWGFFQLTNHGVGRELMEEMRREQARLFRLPFETKEKAGLLNGSYRWGNPTATSLRHLSWSEAFHVPLASISGADCDFGDLTSLRGVMQEVAEAMSRVANTVAAALAEELTGRGGGGASAAPWFPAGCDETTCFLRLNRYPACPFAADTFGLVPHTDSDFLTVLCQDQVGGLHLMKDSRWVAVRPRPDALVVNIGDLFQAWSNNRYKSVEHKVVANAKTDRLSVAYFLCPSYDSLVGTCGEPSPYRAFTFGEYRKKVQEDVRTTGKKIGLPNFFKHSSVQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.133872 | 1.122264 | 0.948313 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0630300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44150 | RBH | 1.438984 | 0.754507 | 0.286261 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0522500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020280 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0021050 | RBH | 0.0 | 0.000000 | 0.521289 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020770 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020680 | RBH | 2.112546 | 2.399547 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0409400 | RBH | 0.0817225 | 0.1320605 | 0.5043435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019480 | RBH | 0.0 | 0.0 | 0.670874 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0409800 | RBH | 0.738107 | 0.010066 | 0.9061825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020320 | RBH | 0.129715 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019760 | RBH | 0.0 | 0.0 | 0.645260 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019710 | RBH | 0.0 | 1.872882 | 4.355650 |
