Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0515900 | OGI:04077760 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:25773347-25776183 | ||||||||
| Gene Symbol | ONAC008, ONAC8 | ||||||||||
| DNA seq | AAAATTTACACCTATATCTATCTATATTTCTCGTTTGTGCTCGGGCTAGCTCACCATATGCGTAAAATTCTGTAGCCAAAAGGAGCAAGCAAACTAGGAGGAGGATTAGTTCTTGCGCATCGCTTCTGAGCTCGATCTACGTCGTCCGGCCGGCCGGGAGGGATCGATCGATGGGTCTGAGGGAGATCGAGTCGACATTGCCGCCGGGGTTCAGGTTCTACCCGAGCGACGAGGAGCTGGTCTGCCACTACCTCTACAAGAAGGTGTCCAACGAGCGCGCCTCGCAGGGGACGCTGGTGGAAGTCGACCTCCATGCGCGCGAGCCATGGGAGCTTCCCGGTGAGTCATGAATTAATATATCCTGCATGTTGCTGCTAATTCTCATCGTTCTATATATCTCTCCCCTCGATCTCGCACAGGTTGCTTTATCACTAGTAACTCTTATGTTAGCATGTTTCCGGATTAGATATATAGATCATAGATGTGATGATCTCGATCGAGATGCTTACAGAAAACAGCAAAAACCATGCATCTGATTTTCTTCATGATGCGATAGGCTAGCAGATTAATTAGCATGCTCTGTTCCATTGAAGATATATTTGCAAAAAAAAAAAAAGCTTGCCCCTTTAATTTGGTAGCACCGTAGCAGCAAGTACTGATGATGTCACAATTATAATGATGAACAAGAAAATAACTACCTGATCGAAGAATTTTCTACTTAGTATATATATTTGAATTATTTTAACTTGAATGAATCCTAAAGATTCGATTTCTGTCAGTTAATGGCCTTGAGCTCCATAATTTATCACGGAATAATCCACAATAATTTCGTCCAATAATACATTAACTGATACGAAAGCAAAGTGTTATACTCGTCGCCATCTTGATGACGACTCCGATACCGTCTGTTTCTTTGCTACGTCACATGAGTAACAGTTCCTTCCGTTTTTCTGTTCCTTTTTTCTCTGAAAAACCATTTCCCTTTTTCCTCCAGAAATTAGTTCAGTTTGAGCACTTTACGGCCGTCAATCTAAACTCTCCTCGGTGTATCAGAACGGATTTGCTAGTTTACTGGCGACAGTAAACGAGGGGAAAAACTGCCGAATTTTTGAACGTCGGATTCGCCTCAAGATTAGTGCTGGCGCGTTCGTGCAAAAGATCCACGCGATATGTAAAGAAAAACTGCCGAATTTTTGAACGTCGGATTCGCCTCAAGATTAGTGCTGGCGCGTTCGTGCAAAAGATCCACGCGATATGTAAAGAAAAACTGCCGAATTTTTGAACGTCGGATTCGCCTCAAGATTAGTGCTGGCGCGTTCGTGCAAAAGATCCACGCGATATGTAAATTTGTGTGTTGCATGGGGTTCGAACCCAGGACTTCAATCCCACTAGCTATGCGTGGTAGCCACTTCGTCTCATGCAAGTTTTTTAAAAAGTTTGCAAGTTACAGTTAGTTATACTCCAGTTACACTCTAGTTACATTGTAGTTACCATTGTAACTATAGTGTAACTACACTATAACTATATTGTTATCTCTATATAAATTAGATATAAAGTTGCATATATTATTTTAATACATATATACAAGTTATTATTATTATAGTATATAATTCTAGTAAAATTTCCCCTCAAAAAACACTCGACAGTTTTTTAGCTAATCCCTATCAGAAATTAGTTTCACTTCATGTATGCAAAGCCAGACTAATTCGCATGCACTATCTCAACTTCTCAAGCCCCTCTCTAACAACGCATTCGTTCTTGCTATTCTTTGCGCACATGCAGACGTGGCGAAGCTGACGGCGAGCGAGTGGTACTTCTTCAGCTTCAGGGACCGAAAGTACGCGACGGGGTCGCGCACGAACCGCGCCACCAAGACAGGCTACTGGAAGGCCACCGGCAAGGACCGCGAGGTGCGCAGCCCGGCCACGCGCGCCGTCGTCGGCATGCGGAAGACGCTCGTCTTCTACCAGGGCCGCGCCCCCAACGGCGTCAAGTCCGGCTGGGTCATGCACGAGTTCCGCCTCGACTCGCCGCATTCTCCACCAAAGGTACGTACATAGCACGAGCTAGCTCTTCTCTCTACCCGCCAAAACGTGCTACTTCTTGTTGCCGCTAATTGCTAACCTGGACACGGATCGATATGCGTTTCTTGCAGGAGGATTGGGTGCTTTGCAGGGTGTTTCAGAAGAGCAAGGGAGACGGCGAGCAAGACAACCCCACCAGCGCAGCCTCCCCGGCGGCGACCTTCGCCGGCTCGTCGCAGGCGGCGGTGCCTGGCCAAGCCGCGTACAGCAGCGACGACCATACGGGCTCGTCGATGGGATTCGCGCCGAGGCAGAACGAGATACTCGACAGCTCGAGCCATCAGTTGCTGAACTTGGCGATGCTGCAGTGCAACTCGGTTCTCGATCATTTCCCGCAGGAGGTGAACAGCTCGCCGATGATGGGGTTGGCAGGGTCCATCGGAATTGGGGATGAATACGGCTTCTTCTACGATACCGGCTTCGAGGAGACGGCGAGCCTCGGGGGCATGAGGTTCCCACAAGGGTGGAGTTGATGCCAATTGATCGTGCATGCAGTGAGATCATCGTGCCTGCGCGCATTTGCGAAGGAAAATGATTGAATTAATTCCATTGATACAGTTATTTCGTCCTAAAAAAATAAACTATTGCTACTGTAGGTAGTGTTTGGTTTAGCATAGAACCTGCATGAGATGGTTCGGTCACTTGAACTGTATATATATTGTGTGAGTCAAAATGTATCGCTCTACTCGTATGCAAGTTGATACAATCCATCCCAAAGTTCCAGTTCATAGATCAAACGATCTATGAGCTATC
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| CDS seq | ATGGGTCTGAGGGAGATCGAGTCGACATTGCCGCCGGGGTTCAGGTTCTACCCGAGCGACGAGGAGCTGGTCTGCCACTACCTCTACAAGAAGGTGTCCAACGAGCGCGCCTCGCAGGGGACGCTGGTGGAAGTCGACCTCCATGCGCGCGAGCCATGGGAGCTTCCCGACGTGGCGAAGCTGACGGCGAGCGAGTGGTACTTCTTCAGCTTCAGGGACCGAAAGTACGCGACGGGGTCGCGCACGAACCGCGCCACCAAGACAGGCTACTGGAAGGCCACCGGCAAGGACCGCGAGGTGCGCAGCCCGGCCACGCGCGCCGTCGTCGGCATGCGGAAGACGCTCGTCTTCTACCAGGGCCGCGCCCCCAACGGCGTCAAGTCCGGCTGGGTCATGCACGAGTTCCGCCTCGACTCGCCGCATTCTCCACCAAAGGAGGATTGGGTGCTTTGCAGGGTGTTTCAGAAGAGCAAGGGAGACGGCGAGCAAGACAACCCCACCAGCGCAGCCTCCCCGGCGGCGACCTTCGCCGGCTCGTCGCAGGCGGCGGTGCCTGGCCAAGCCGCGTACAGCAGCGACGACCATACGGGCTCGTCGATGGGATTCGCGCCGAGGCAGAACGAGATACTCGACAGCTCGAGCCATCAGTTGCTGAACTTGGCGATGCTGCAGTGCAACTCGGTTCTCGATCATTTCCCGCAGGAGGTGAACAGCTCGCCGATGATGGGGTTGGCAGGGTCCATCGGAATTGGGGATGAATACGGCTTCTTCTACGATACCGGCTTCGAGGAGACGGCGAGCCTCGGGGGCATGAGGTTCCCACAAGGGTGGAGTTGA
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| Protein seq | MGLREIESTLPPGFRFYPSDEELVCHYLYKKVSNERASQGTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPATRAVVGMRKTLVFYQGRAPNGVKSGWVMHEFRLDSPHSPPKEDWVLCRVFQKSKGDGEQDNPTSAASPAATFAGSSQAAVPGQAAYSSDDHTGSSMGFAPRQNEILDSSSHQLLNLAMLQCNSVLDHFPQEVNSSPMMGLAGSIGIGDEYGFFYDTGFEETASLGGMRFPQGWS |
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| Function | Protein CUP-SHAPED COTYLEDON 1 [UniProtKB/Swiss-Prot:Q9FRV4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0515900 | OsNip_04t0515900-01 | Chr04 | 25773347 | 25776183 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGTCTGAGGGAGATCGAGTCGACATTGCCGCCGGGGTTCAGGTTCTACCCGAGCGACGAGGAGCTGGTCTGCCACTACCTCTACAAGAAGGTGTCCAACGAGCGCGCCTCGCAGGGGACGCTGGTGGAAGTCGACCTCCATGCGCGCGAGCCATGGGAGCTTCCCGACGTGGCGAAGCTGACGGCGAGCGAGTGGTACTTCTTCAGCTTCAGGGACCGAAAGTACGCGACGGGGTCGCGCACGAACCGCGCCACCAAGACAGGCTACTGGAAGGCCACCGGCAAGGACCGCGAGGTGCGCAGCCCGGCCACGCGCGCCGTCGTCGGCATGCGGAAGACGCTCGTCTTCTACCAGGGCCGCGCCCCCAACGGCGTCAAGTCCGGCTGGGTCATGCACGAGTTCCGCCTCGACTCGCCGCATTCTCCACCAAAGGAGGATTGGGTGCTTTGCAGGGTGTTTCAGAAGAGCAAGGGAGACGGCGAGCAAGACAACCCCACCAGCGCAGCCTCCCCGGCGGCGACCTTCGCCGGCTCGTCGCAGGCGGCGGTGCCTGGCCAAGCCGCGTACAGCAGCGACGACCATACGGGCTCGTCGATGGGATTCGCGCCGAGGCAGAACGAGATACTCGACAGCTCGAGCCATCAGTTGCTGAACTTGGCGATGCTGCAGTGCAACTCGGTTCTCGATCATTTCCCGCAGGAGGTGAACAGCTCGCCGATGATGGGGTTGGCAGGGTCCATCGGAATTGGGGATGAATACGGCTTCTTCTACGATACCGGCTTCGAGGAGACGGCGAGCCTCGGGGGCATGAGGTTCCCACAAGGGTGGAGTTGA
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| Protein seq | MGLREIESTLPPGFRFYPSDEELVCHYLYKKVSNERASQGTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPATRAVVGMRKTLVFYQGRAPNGVKSGWVMHEFRLDSPHSPPKEDWVLCRVFQKSKGDGEQDNPTSAASPAATFAGSSQAAVPGQAAYSSDDHTGSSMGFAPRQNEILDSSSHQLLNLAMLQCNSVLDHFPQEVNSSPMMGLAGSIGIGDEYGFFYDTGFEETASLGGMRFPQGWS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.463649 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0643600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43560 | RBH | 0.0 | 0.0 | 0.113530 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0515900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019900 | RBH | 0.0 | 21.407467 | 0.719601 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020690 | RBH | 0.0 | 1.418984 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020400 | RBH | 0.0 | 5.036435 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020120 | RBH | 0.0 | 0.178033 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020330 | RBH | 0.0 | 6.530056 | 0.846840 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0403300 | RBH | 0.387738 | 7.429126 | 3.363269 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015180 | SBH | 0.0 | 0.518750 | 0.276179 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0404400 | RBH | 1.470888 | 3.736296 | 0.0714365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019610 | RBH | 0.0 | 0.506098 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019460 | RBH | 0.0 | 12.175134 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019580 | RBH | 0.0 | 21.541681 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019950 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019360 | RBH | 0.0 | 0.000000 | 0.980639 |
