Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0514600 | OGI:04077600 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:25708429-25712602 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCACTGAAAACGGGATCCTGTCAGATTGGAATGAAGTACTTGCTCTCCATATGTGCCACCGCCTCCTTGTCCTCCCACAGCAGTTTCTTCCACCAATCAGATGAACCACAAATTTGCTTCAGTTTACCACAGTTGTGAGTGCTGCACAGTGGGATGCGTCTCAAATTTGGGCAGTCTTCCACTCGAAGAGTCTCAAGGCAGGGAAAATCTCTTGGCGTGCAAATGCTTCTCAGCTTCTTCACATCAGTCAGCACAATTGATCTCAACTTTGGGAAGTCAGGTTGCCTCGTTGCGCCATTGGTTGATTCTCCATTGACGCTTTGGTAATCATCATTCCACTCATTGCGTGAACTCTCAGCCATTGCATGATCGTCTTGTTCTTCAGAATAATAACCCTGCATTTTTATTGTTTGTGTTCCATATTGCTGCTCTTCAGTACTGTTAGCTTCTTCAACAATAGTCAGCATCTCATCACAATTGGATATGACAAGCCTCTCAAGCAGTTCAAGTCTTCGGACCCATGTGATGTTCAACAACTTGGGGCATTGTGAAATGGACAATTTGCGAACGTACCGAAAATTATGGGGCATTGGTGCAACAAGGACATTTTCTAATGAGGGAAGGACGGAGAGGGTCAGTGCTTGTAGGCAAGAAGTCGTCAACTCAGTATCGGCAACCAGTGTATTCAGGTCATAGCATGATTCGACATGCAGCTCCTCAAGGTGCTTCATATGGTTAAAGTCAGAAATTTTGATTGATTGCATATCTCCACAATACTTCAGGTTCAAGCGATGCGTTGATTTTGCCAAAGGATGGGTCTCGTTCAATTTCTTAAGCACATCTTGTGAATAAATAGTGATACCAAGAAACAATAGATCCCTCAGTGAATCCAGATTCAGGTCATCAACATCACGAATCCCGTAATGGCTGCGGAAGAGATTCAGCACTCTCAACTTGTGTAACTTTGAGCAGTTATTCAAAGTATCTTCAAGTGCAACAGTCACACTGAGGTCCAGATGCCTCAACTCTTTCAATAACCATAGGCGCTCAGGTAATCTCATAATATGTGTGTATGACAGGTCGAGATGCTGCAATGCAACCAATTTATCACATTCTGGAATGGAAGTAATTGCAGTGTGTGATAGATCTAGCACTTTCAAGGATCGCATATATTTGAAAAAACCCCAGCCTAGCTTGTTCAACTTTGGGTTATTCTGGATTAACAGTGTGGTGAGGTTTTCGCATTTTGGTGAGAAAGAAAGCTCTGTGATGTTATTAGACATGATGGAGATCCTTGTAGCTTCTTTCCATTCTATTGCTGGTGGAGCATTATCTAAGGCCATCCCTGCTTTAACAACAAAACTTCTATCTTCCCTGTTAACCAACCAAAGCCCCAAATGTCTGATTATGTGGTGCATTTTCACCTTTGATGACATTGAACTAGTGGTCTGCAACAAGCATGCTGAAATAAGACTTCGGATTATCTGATTACCCTTCTCGCGATCATCAAGTAGCAAACCTTCAGCCAACCAATAATCAACAAGATGCTCTTTACTAATTGATCCATACTCTGGAAAAAGAGTGCAATACAGAAAGCACTGTTGCTGAGTAGGTGTGAGCCTGTCGAAGCTGTATTTCAGCGTAGCAAACATTTCATCAACACCTTCAAACTTCATATTCTCTTTGATTGCATCAGCAGCTGAATTCCAATCTCTTGGTTCTTCATAGCCTGCCACAGCAGTCCCAATGACATTGAGCGCAAGTGGTAGACCTCCACAACTTTGAGCTATTGCTATGGCATGATCCCTAACAACATTGCTGGGACTAGGTGATTCAACTGCTGCACAAGCCTCGGTGCTTAGCTTGCTCAAGAACAGTTTCCATGCAGCATCATTATCCAGAAGATCCATCTTAATCAAGTTCCTCTATGCGCCCATCTGGTAGCATACTTCTTGGAAACGTGAAGTTAGGATCAGCTTGCTCTGGCTGTTGGTGTCTGGAGTTGGGATGCCAACATCTTCTAGCCGGAATTTCTTCCTTACATCATCAAGAAGCAGTACAAATCTTTTCCTGGACAAGGCCTTAACAAGGAATCTGGCCCGTTTCACAGTTATCTCTGCTTCATTCCATGGTAAATTAAGACGTTCGGAGATGGTCTTCTGCATCTCCAATGTGTCAAGTGTCTCTGAATTGGATACTTCAATAAATATGACAACCTGGCACAACCAATTTAATAAAAAAAAAAGCAACATGATTTTCACTCCAAAGGTAAAAGCAATTCAGAAATATTATTGAAATGCAACATGGAAGAGAAGTAGAACAGAAGTATGTACGATGCTCAGTGTGCAATTATGCAAAATGCAACTCGGTATCCACTTTAATAATAGATATTTTTCTCCCATCCTTGGAGAGGTATATACCTCCCCATATTTGAGATATACCTCTCCATAAAAGGAGGTACCAAAATTAAACTTGCATGTTGAAAGAGGATTGGAAACTTATCTTTATAGATATTTGTTACTTGTTCTTACATTCTTTTAGAGGTATAGATATTGGTTCTAACTAAGAGTTATATACATCTGGACTAACACTAGAGGTATACCTCTCTATACCCCACAACGACTAGAAAAGGATTGGAGAAAACCTCTTAATAGTATGAGTTCAACATAGCATCTTCTTACATAGGGAAGTGCTGCCCTGCACCATGGATTTCCCTTCACAAAATTTAGTAAAGAAAGATACAATTGTATTGGCATATTTGGTGGGTTTTGTACATCCAATTAAAATTTGTGAGAGCCAACATGGCAATGTGCATTCACCTTAGAATGCAGAGGCCGGGCGTTGCACATTATCTAAAAAAATGTTTGACCCTTCCCAGCTGCAGGACAAAATTAGATAAGAGACAACCATTTGGATGCATTACTACCTTTCTTTCCAACTATTTGGATACATTATAAGATATGTATCTCTATTTCATCAAAATAGCAACTCCGGGCAGTCTCCCACACACTATTGTCAGGTGTATGATAGTAAGGCCTGACTTGCTTGCTAAATCCATACTTCTTTAGATTAACTCTTCTATGTTCAGTGTGCAATTATGCAAAATTTAGCTACTTCCTCTTTATTAACTCTGATGTGTTTAAAAATCTCTAAGATGTAAGGTTAGTGTGTACCTGATCATGTTACCTATGAGATTATAAAATTTTCAGTTTGAACTAGCACTTGCGAAAAATATTTTAGCCATCCTATACATGCAAGGGACACGCTATTGTGTTCTTGTGCAAGAACAATGACATTCCCCTGGCATAACTGAAACGAAAATTATCATACATACCCCCCTAGCAGTCCCATATTCCCATGCAACAGTTCTGAATATGGTGCCACATGTAAATCATGATTGAAGCAATCATCTATATTCATCCCAAAAGAGAACCAGAAATAAACGTATACATAATAAAATGCAGTTTTTGAGAAAACAGCACATTACCTGGTAGTTATGGACCTTCTTCTCAAGATCATTGTTGAAGGCATGTAGTAGTGTCGTCTTACCAATACCCCCTTGACCCCAAATACCAATTATGTTCGAGTCAGCCTTCTCAAGCAGATCATGCAGCTGAACCAGCATGGTCTCCAATCCAAATGTCTTGGTTTGAGGCAAGCGCTCGACAATCTCCGGTGAGGGCTTGAATCCAAACTTCTTAAACCGCCTCCCTTCCTCGATCAGTTTATTCACCTCATCCAGCGCCTCGACGATACGCTTGCCAATCCATGAACGCCGAGCAGCATGCCTGGTGCACTGGCAAATGCTAGAGTAATTCATCAAACTGCTATAGTCCTCATCAATGGCACCCAGCTTCAGCTCATCGACACGCCTCAGCCACAGCTCCACCTGAGGATCACAGACGTTCAGCTTGTTTAACTCCGCGGTTACCCGCCCTCGAACCATCCTCTCAACAGCCCCCAGGCTCTCCCTGGCCTTGTCAAGATCACCCCAATTTGATTTGAGCCGAAGGAAAGAGGCGACCTCCCTTCCTGCGGCATCGAGCAGGCCGGTGCCATCCAAGCAGTCGCACAGTGGCTGCAGGCATGAGATCGCGTCGGCCATTGGGAACCACGACGAGCATGCAGCAGCCAATACTGGAGGCTGCAAACACGTACGGGAGTTCCTGAGCAT
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| CDS seq | ATGCTCAGGAACTCCCGTACGTGTTTGCAGCCTCCAGTATTGGCTGCTGCATGCTCGTCGTGGTTCCCAATGGCCGACGCGATCTCATGCCTGCAGCCACTGTGCGACTGCTTGGATGGCACCGGCCTGCTCGATGCCGCAGGAAGGGAGGTCGCCTCTTTCCTTCGGCTCAAATCAAATTGGGGTGATCTTGACAAGGCCAGGGAGAGCCTGGGGGCTGTTGAGAGGATGGTTCGAGGGCGGGTAACCGCGGAGTTAAACAAGCTGAACGTCTGTGATCCTCAGGTGGAGCTGTGGCTGAGGCGTGTCGATGAGCTGAAGCTGGGTGCCATTGATGAGGACTATAGCAGTTTGATGAATTACTCTAGCATTTGCCAGTGCACCAGGCATGCTGCTCGGCGTTCATGGATTGGCAAGCGTATCGTCGAGGCGCTGGATGAGGTGAATAAACTGATCGAGGAAGGGAGGCGGTTTAAGAAGTTTGGATTCAAGCCCTCACCGGAGATTGTCGAGCGCTTGCCTCAAACCAAGACATTTGGATTGGAGACCATGCTGGTTCAGCTGCATGATCTGCTTGAGAAGGCTGACTCGAACATAATTGGTATTTGGGGTCAAGGGGGTATTGGTAAGACGACACTACTACATGCCTTCAACAATGATCTTGAGAAGAAGGTCCATAACTACCAGGTTGTCATATTTATTGAAGTATCCAATTCAGAGACACTTGACACATTGGAGATGCAGAAGACCATCTCCGAACGTCTTAATTTACCATGGAATGAAGCAGAGATAACTGTGAAACGGGCCAGATTCCTTGTTAAGGCCTTGTCCAGGAAAAGATTTGTACTGCTTCTTGATGATGTAAGGAAGAAATTCCGGCTAGAAGATGTTGGCATCCCAACTCCAGACACCAACAGCCAGAGCAAGCTGATCCTAACTTCACGTTTCCAAGAAGTATGCTACCAGATGGGCGCATAG
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| Protein seq | MLRNSRTCLQPPVLAAACSSWFPMADAISCLQPLCDCLDGTGLLDAAGREVASFLRLKSNWGDLDKARESLGAVERMVRGRVTAELNKLNVCDPQVELWLRRVDELKLGAIDEDYSSLMNYSSICQCTRHAARRSWIGKRIVEALDEVNKLIEEGRRFKKFGFKPSPEIVERLPQTKTFGLETMLVQLHDLLEKADSNIIGIWGQGGIGKTTLLHAFNNDLEKKVHNYQVVIFIEVSNSETLDTLEMQKTISERLNLPWNEAEITVKRARFLVKALSRKRFVLLLDDVRKKFRLEDVGIPTPDTNSQSKLILTSRFQEVCYQMGA |
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| Function | Probable disease resistance protein At1g61190 [UniProtKB/Swiss-Prot:O22727] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0514600 | OsNip_04t0514600-00 | Chr04 | 25708429 | 25712602 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTCAGGAACTCCCGTACGTGTTTGCAGCCTCCAGTATTGGCTGCTGCATGCTCGTCGTGGTTCCCAATGGCCGACGCGATCTCATGCCTGCAGCCACTGTGCGACTGCTTGGATGGCACCGGCCTGCTCGATGCCGCAGGAAGGGAGGTCGCCTCTTTCCTTCGGCTCAAATCAAATTGGGGTGATCTTGACAAGGCCAGGGAGAGCCTGGGGGCTGTTGAGAGGATGGTTCGAGGGCGGGTAACCGCGGAGTTAAACAAGCTGAACGTCTGTGATCCTCAGGTGGAGCTGTGGCTGAGGCGTGTCGATGAGCTGAAGCTGGGTGCCATTGATGAGGACTATAGCAGTTTGATGAATTACTCTAGCATTTGCCAGTGCACCAGGCATGCTGCTCGGCGTTCATGGATTGGCAAGCGTATCGTCGAGGCGCTGGATGAGGTGAATAAACTGATCGAGGAAGGGAGGCGGTTTAAGAAGTTTGGATTCAAGCCCTCACCGGAGATTGTCGAGCGCTTGCCTCAAACCAAGACATTTGGATTGGAGACCATGCTGGTTCAGCTGCATGATCTGCTTGAGAAGGCTGACTCGAACATAATTGGTATTTGGGGTCAAGGGGGTATTGGTAAGACGACACTACTACATGCCTTCAACAATGATCTTGAGAAGAAGGTCCATAACTACCAGGTTGTCATATTTATTGAAGTATCCAATTCAGAGACACTTGACACATTGGAGATGCAGAAGACCATCTCCGAACGTCTTAATTTACCATGGAATGAAGCAGAGATAACTGTGAAACGGGCCAGATTCCTTGTTAAGGCCTTGTCCAGGAAAAGATTTGTACTGCTTCTTGATGATGTAAGGAAGAAATTCCGGCTAGAAGATGTTGGCATCCCAACTCCAGACACCAACAGCCAGAGCAAGCTGATCCTAACTTCACGTTTCCAAGAAGTATGCTACCAGATGGGCGCATAG
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| Protein seq | MLRNSRTCLQPPVLAAACSSWFPMADAISCLQPLCDCLDGTGLLDAAGREVASFLRLKSNWGDLDKARESLGAVERMVRGRVTAELNKLNVCDPQVELWLRRVDELKLGAIDEDYSSLMNYSSICQCTRHAARRSWIGKRIVEALDEVNKLIEEGRRFKKFGFKPSPEIVERLPQTKTFGLETMLVQLHDLLEKADSNIIGIWGQGGIGKTTLLHAFNNDLEKKVHNYQVVIFIEVSNSETLDTLEMQKTISERLNLPWNEAEITVKRARFLVKALSRKRFVLLLDDVRKKFRLEDVGIPTPDTNSQSKLILTSRFQEVCYQMGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.239786 | 1.092940 | 0.411104 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43440 | RBH | 0.858146 | 0.755498 | 0.106782 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0514600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019830 | RBH | 0.000000 | 7.657526 | 0.431727 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020620 | RBH | 0.0 | 0.322917 | 0.038683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020330 | RBH | 0.0 | 1.454975 | 0.662648 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020050 | RBH | 0.000000 | 0.060032 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020260 | RBH | 0.0 | 4.701287 | 0.383600 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0402500 | SBH | 0.8996905 | 8.6084955 | 0.9512655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019060 | RBH | 0.031982 | 0.054594 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0403200 | RBH | 1.1393815 | 36.4743045 | 1.136839 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019540 | RBH | 0.0 | 0.082715 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019390 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019510 | RBH | 0.0 | 3.223758 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019880 | RBH | 0.000000 | 0.162241 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020050 | RBH | 0.080372 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019320 | RBH | 0.0 | 0.294027 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019280 | RBH | 0.0 | 0.000000 | 0.778427 |
