Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_04g0504500 OGI:04076450 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr04:25182303-25186566
Gene Symbol PLT4, OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4
DNA seq

GACCTTGCTAGCTACACCTGAAGATCAGCTGGTTGCCGACTTGCCATTGCCGATGCAAGATTCCGGTAGCTGCACTGATCGATCAAAGAACAATCTGGCTAGCAATCTTGGTTCTTGTTTGCAAATTAATCAGTGAAAAGATACACGAAGAAAGCTAATTAAGCTAGTGATTTTGGTGTCTAGTAGCTAATGGCTTCTGCAGATAACTGGCTAGGCTTCTCGCTCTCCGGCCAAGGCAACCCACAGCATCACCAGAACGGCTCGCCGTCTGCCGCCGGCGACGCCGCCATCGACATCTCCGGCTCAGGCGACTTCTATGGTCTGCCAACGCCGGACGCACACCACATCGGCATGGCGGGCGAAGACGCGCCCTATGGCGTCATGGATGCTTTCAACAGAGGCACCCATGAAACCCAAGGTGAGGAAGCCAGGTTGCTGATCTGATGAGCATGCAGCTAGCTAGCTACAGCGCAGTGATGAGGGATTTGATATGTGTGGCGTGTGCTTTGCAGATTGGGCGATGAGGGGTTTGGACTACGGCGGCGGCTCCTCCGACCTCTCGATGCTCGTCGGCTCGAGCGGCGGCGGGAGGAGGACGGTGGCCGGCGACGGCGTCGGCGAGGCGCCGAAGCTGGAGAACTTCCTCGACGGCAACTCATTCTCCGACGTGCACGGCCAAGCCGCCGGCGGGTACCTCTACTCCGGAAGCGCTGTCGGCGGCGCCGGTGGTTACAGTAACGGCGGATGCGGCGGCGGAACCATAGAGCTGTCCATGATCAAGACGTGGCTCCGGAGCAACCAGTCGCAGCAGCAGCCATCGCCGCCGCAGCACGCTGATCAGGGCATGAGCACCGACGCCAGCGCGAGCAGCTACGCGTGCTCCGACGTGCTGGTGGGGAGCTGCGGCGGCGGCGGCGCCGGGGGCACGGCGAGCTCGCATGGGCAGGGCCTGGCGCTGTCGATGAGCACGGGGTCGGTGGCCGCCGCCGGAGGGGGCGGCGCCGTCGTCGCGGCCGAGAGCTCGTCGTCGGAGAACAAGCGGGTGGATTCGCCGGGCGGCGCCGTGGACGGCGCCGTCCCGAGGAAATCCATCGACACCTTCGGGCAAAGGACGTCTATATACCGAGGTGTAACAAGGTTAGCGATTTCCATCAACTTTTGCTAGTGTTATTGTTGCTGATCTTGTTCTGCATCTTCCAGCTCAAGTATTATATTGCTTATCGATTTTCTCTCATGTTTTAGTGTATTGCTCATTGATCTCAAAGCAAATGTTTGGATCGAAGTATATTAGGATGTGTTTCATCTAAATATCTAATTAGTTGCTGAGAGCATATATAATGCGATTCTCCTAGTAGTCGCTTCTTTGCTGTTGCTCTGCTACACAGTGCTACTTGCTCTTCTCACTTAGCCTAGAGGTAACACTAGCTTGTAATACAAGGTGATTTAGAAGTATACAATTCATAAAATGTACTAGATTTGACCAACACAGAAGTGGAGCACATGTAATTTCCATGATTTCTTGGTGATCCGCTTTGCCAATGCAAGTGCTTCTTTTGACGCTTCGAGTACTGAACCGTTAGCGTTTGAAGTGCAGTGATGATCATCTGCAATGAACAGATGCTCTCTAATTAGTTTTCTTGTTGTCCACAACTTTAATTATTTTTACAATTTTCTTCTAGTCGATAAAAAATAATATATATGCATGTTTATATAAAAATTTTTAAGTTCTTCATACGTATAATCACGTTGTTAATCTGTCTTTCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTGTGGGATAATAGCTGTAGGAGAGAAGGCCAAAGTCGCAAGGGGAGACAGGGTATGTATATATAGTGAGAGATATGTAATGGTAGTTAATTACTCCCTTATTCTATAATCTTAAAGATAAATTAACTGATCAATGATTAATCATTCTTCCATCTGTTCTGTGACTGAATACTGAATTTTTGTCGCCTCTCCATCCGGGATATGACACTTCACACTCATGAAAATGCAGTTTATTTGGGTAAGAGCTAATCTTGTGCAATATATTCACCTATCATGTATAGCATATATATCCATTTCGTAAAAAAAAATGTAAATCTTATGCTAATACTTCGAAGTTCTCACTTATCTTCTTCACGAACATTTGTGTAGGCGGTTATGACAAAGAAGATAAGGCGGCTCGGGCTTATGATTTGGCAGCTCTAAAATACTGGGGCACGACCACAACAACAAATTTCCCAGTACAGATATTCTTCTTTTTAAAAAAAGACTTAAAGAGATGATACAATTCTGTTAATTGCTTTTTAGATTTGTCTATTTCCATGTGCATGGTTTGTTTGAATATCAAAATTCTGTGCAGATGAGTAATTATGAAAAGGAGCTAGAGGAAATGAAACACATGACCAGGCAGGAGTACATTGCACATCTTAGAAGGTATTGCTTGATGCATGCTGATTATACTATAGCATCACATGTTTGGAAGATTGCACAGCACGAAAGCACGCTTCTGTTGCATAGCAACTAATTAATTACGTGCATGGTCATTCAACCACAGGAATAGCAGTGGATTTTCTCGTGGTGCATCCAAATATCGTGGTGTTACTAGGTAATTAAATCTACCATCAAATTACATGTTGGGTAAAAGTTATATTATATATGTATGATACTCCTATTGTTCGAGCTGAATATATATGATTTACTATGTTTATGTTGAGATGTTGGAATTTATCTAGAATGACGGTTTGACAGGCATCATCAGCATGGGAGATGGCAGGCAAGGATAGGGCGAGTTGCAGGCAACAAGGATATCTACCTAGGCACCTTCAGTAAGCCAATTATACCAACTAGCACACAGAAGCTAATCTATTTGTTAATTAAGCTAGTTAAGATCCTCTGTTAATTGAAATATATCCATAAAAGTACTTACTGGAACTGGAGGTACTAGGACGGCACTGTGCTTTCAAGAACCCCGAGTCATCATCAAGCCCTAATTATTTAGTAATCCATTTTCTCGAAATCTCTGCCTCGTAGAGCGGAGAGAGGGTGCATTATTCTATCCTGCCCAATGGGTATTAATAATAGTGGAGTAGCACATTAATTATGTCCCAAATGTTCCTTTCCAAGTTTGTGTCTCGGAGCTGTCTGAGGAAACCGGGGCATGTGGTCAAGAGCTCATTTTAGAAAAACCCTAGCTACTGCATCGAGACGTCACAGCTTGCATGCAGTGCGCGCGGCGAGTACACACACATGCACGCGCGCGTCGGTGGGCTAACCCTAATCATGGCGTACGTGCCGTGCTGTGCTGTGCAGGCACCGAGGAGGAGGCCGCCGAGGCGTACGACATCGCCGCCATCAAGTTCCGCGGGCTCAACGCCGTCACCAACTTCGACATGAGCCGGTACGACGTCAAGAGCATCCTGGACAGCAGCACGCTGCCGGTCGGCGGCGCGGCGCGGCGGCTCAAGGAGGCGGAGGTCGCCGCCGCCGCCGCGGGCGGCGGCGTGATCGTCTCCCACCTGGCCGACGGCGGTGTGGGTGGGTACTACTACGGGTGCGGCCCGACCATCGCGTTCGGCGGCGGCGGCCAGCAGCCGGCGCCGCTCGCCGTGCACTACCCGTCGTACGGCCAGGCCAGCGGGTGGTGCAAGCCGGAGCAGGACGCGGTGATCGCGGCCGGGCACTGCGCGACGGACCTCCAGCACCTGCACCTCGGGAGCGGCGGCGCCGCCGCCACCCACAACTTCTTCCAGCAGCCGGCGTCAAGCTCGGCCGTCTACGGCAACGGCGGCGGCGGCGGCGGCAACGCGTTCATGATGCCGATGGGCGCCGTGGTGGCCGCCGCCGATCACGGCGGGCAGAGCAGCGCCTACGGCGGTGGCGACGAGAGCGGGAGGCTCGTCGTGGGGTACGACGGCGTCGTCGACCCGTACGCGGCCATGAGAAGCGCGTACGAGCTCTCGCAGGGCTCGTCGTCGTCGTCGGTGAGCGTCGCGAAGGCGGCGAACGGGTACCCGGACAACTGGAGCTCGCCGTTCAACGGCATGGGATGATCTAGCTACGCAGCGGCCGCGATGTTGCAAGAAGTAAATTCTTGAGCTTAATTAGCGGCAAGTTTAGGATTAGTTCATCATCAGAGTCTACACCACTTGACCAGTACATGCATGAGACACGTATACGTGCGTTGGTAGTATAACATGTGCCTTCTGAAGGCTGGTAATGGCAGGTATTAGGGGGTAATTAAGATTTGTTGT

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CDS seq

ATGGCTTCTGCAGATAACTGGCTAGGCTTCTCGCTCTCCGGCCAAGGCAACCCACAGCATCACCAGAACGGCTCGCCGTCTGCCGCCGGCGACGCCGCCATCGACATCTCCGGCTCAGGCGACTTCTATGGTCTGCCAACGCCGGACGCACACCACATCGGCATGGCGGGCGAAGACGCGCCCTATGGCGTCATGGATGCTTTCAACAGAGGCACCCATGAAACCCAAGATTGGGCGATGAGGGGTTTGGACTACGGCGGCGGCTCCTCCGACCTCTCGATGCTCGTCGGCTCGAGCGGCGGCGGGAGGAGGACGGTGGCCGGCGACGGCGTCGGCGAGGCGCCGAAGCTGGAGAACTTCCTCGACGGCAACTCATTCTCCGACGTGCACGGCCAAGCCGCCGGCGGGTACCTCTACTCCGGAAGCGCTGTCGGCGGCGCCGGTGGTTACAGTAACGGCGGATGCGGCGGCGGAACCATAGAGCTGTCCATGATCAAGACGTGGCTCCGGAGCAACCAGTCGCAGCAGCAGCCATCGCCGCCGCAGCACGCTGATCAGGGCATGAGCACCGACGCCAGCGCGAGCAGCTACGCGTGCTCCGACGTGCTGGTGGGGAGCTGCGGCGGCGGCGGCGCCGGGGGCACGGCGAGCTCGCATGGGCAGGGCCTGGCGCTGTCGATGAGCACGGGGTCGGTGGCCGCCGCCGGAGGGGGCGGCGCCGTCGTCGCGGCCGAGAGCTCGTCGTCGGAGAACAAGCGGGTGGATTCGCCGGGCGGCGCCGTGGACGGCGCCGTCCCGAGGAAATCCATCGACACCTTCGGGCAAAGGACGTCTATATACCGAGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTGTGGGATAATAGCTGTAGGAGAGAAGGCCAAAGTCGCAAGGGGAGACAGGTTTATTTGGGCGGTTATGACAAAGAAGATAAGGCGGCTCGGGCTTATGATTTGGCAGCTCTAAAATACTGGGGCACGACCACAACAACAAATTTCCCAATGAGTAATTATGAAAAGGAGCTAGAGGAAATGAAACACATGACCAGGCAGGAGTACATTGCACATCTTAGAAGGAATAGCAGTGGATTTTCTCGTGGTGCATCCAAATATCGTGGTGTTACTAGGCATCATCAGCATGGGAGATGGCAGGCAAGGATAGGGCGAGTTGCAGGCAACAAGGATATCTACCTAGGCACCTTCAGCACCGAGGAGGAGGCCGCCGAGGCGTACGACATCGCCGCCATCAAGTTCCGCGGGCTCAACGCCGTCACCAACTTCGACATGAGCCGGTACGACGTCAAGAGCATCCTGGACAGCAGCACGCTGCCGGTCGGCGGCGCGGCGCGGCGGCTCAAGGAGGCGGAGGTCGCCGCCGCCGCCGCGGGCGGCGGCGTGATCGTCTCCCACCTGGCCGACGGCGGTGTGGGTGGGTACTACTACGGGTGCGGCCCGACCATCGCGTTCGGCGGCGGCGGCCAGCAGCCGGCGCCGCTCGCCGTGCACTACCCGTCGTACGGCCAGGCCAGCGGGTGGTGCAAGCCGGAGCAGGACGCGGTGATCGCGGCCGGGCACTGCGCGACGGACCTCCAGCACCTGCACCTCGGGAGCGGCGGCGCCGCCGCCACCCACAACTTCTTCCAGCAGCCGGCGTCAAGCTCGGCCGTCTACGGCAACGGCGGCGGCGGCGGCGGCAACGCGTTCATGATGCCGATGGGCGCCGTGGTGGCCGCCGCCGATCACGGCGGGCAGAGCAGCGCCTACGGCGGTGGCGACGAGAGCGGGAGGCTCGTCGTGGGGTACGACGGCGTCGTCGACCCGTACGCGGCCATGAGAAGCGCGTACGAGCTCTCGCAGGGCTCGTCGTCGTCGTCGGTGAGCGTCGCGAAGGCGGCGAACGGGTACCCGGACAACTGGAGCTCGCCGTTCAACGGCATGGGATGA

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Protein seq

MASADNWLGFSLSGQGNPQHHQNGSPSAAGDAAIDISGSGDFYGLPTPDAHHIGMAGEDAPYGVMDAFNRGTHETQDWAMRGLDYGGGSSDLSMLVGSSGGGRRTVAGDGVGEAPKLENFLDGNSFSDVHGQAAGGYLYSGSAVGGAGGYSNGGCGGGTIELSMIKTWLRSNQSQQQPSPPQHADQGMSTDASASSYACSDVLVGSCGGGGAGGTASSHGQGLALSMSTGSVAAAGGGGAVVAAESSSSENKRVDSPGGAVDGAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGTTTTTNFPMSNYEKELEEMKHMTRQEYIAHLRRNSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDIYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILDSSTLPVGGAARRLKEAEVAAAAAGGGVIVSHLADGGVGGYYYGCGPTIAFGGGGQQPAPLAVHYPSYGQASGWCKPEQDAVIAAGHCATDLQHLHLGSGGAAATHNFFQQPASSSAVYGNGGGGGGNAFMMPMGAVVAAADHGGQSSAYGGGDESGRLVVGYDGVVDPYAAMRSAYELSQGSSSSSVSVAKAANGYPDNWSSPFNGMG

Function AP2-like ethylene-responsive transcription factor BBM2 [UniProtKB/Swiss-Prot:Q8LSN2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_04g0504500 OsNip_04t0504500-01 Chr04 25182303 25186566 + RAP2018-11-26
CDS seq

ATGGCTTCTGCAGATAACTGGCTAGGCTTCTCGCTCTCCGGCCAAGGCAACCCACAGCATCACCAGAACGGCTCGCCGTCTGCCGCCGGCGACGCCGCCATCGACATCTCCGGCTCAGGCGACTTCTATGGTCTGCCAACGCCGGACGCACACCACATCGGCATGGCGGGCGAAGACGCGCCCTATGGCGTCATGGATGCTTTCAACAGAGGCACCCATGAAACCCAAGATTGGGCGATGAGGGGTTTGGACTACGGCGGCGGCTCCTCCGACCTCTCGATGCTCGTCGGCTCGAGCGGCGGCGGGAGGAGGACGGTGGCCGGCGACGGCGTCGGCGAGGCGCCGAAGCTGGAGAACTTCCTCGACGGCAACTCATTCTCCGACGTGCACGGCCAAGCCGCCGGCGGGTACCTCTACTCCGGAAGCGCTGTCGGCGGCGCCGGTGGTTACAGTAACGGCGGATGCGGCGGCGGAACCATAGAGCTGTCCATGATCAAGACGTGGCTCCGGAGCAACCAGTCGCAGCAGCAGCCATCGCCGCCGCAGCACGCTGATCAGGGCATGAGCACCGACGCCAGCGCGAGCAGCTACGCGTGCTCCGACGTGCTGGTGGGGAGCTGCGGCGGCGGCGGCGCCGGGGGCACGGCGAGCTCGCATGGGCAGGGCCTGGCGCTGTCGATGAGCACGGGGTCGGTGGCCGCCGCCGGAGGGGGCGGCGCCGTCGTCGCGGCCGAGAGCTCGTCGTCGGAGAACAAGCGGGTGGATTCGCCGGGCGGCGCCGTGGACGGCGCCGTCCCGAGGAAATCCATCGACACCTTCGGGCAAAGGACGTCTATATACCGAGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTGTGGGATAATAGCTGTAGGAGAGAAGGCCAAAGTCGCAAGGGGAGACAGGTTTATTTGGGCGGTTATGACAAAGAAGATAAGGCGGCTCGGGCTTATGATTTGGCAGCTCTAAAATACTGGGGCACGACCACAACAACAAATTTCCCAATGAGTAATTATGAAAAGGAGCTAGAGGAAATGAAACACATGACCAGGCAGGAGTACATTGCACATCTTAGAAGGAATAGCAGTGGATTTTCTCGTGGTGCATCCAAATATCGTGGTGTTACTAGGCATCATCAGCATGGGAGATGGCAGGCAAGGATAGGGCGAGTTGCAGGCAACAAGGATATCTACCTAGGCACCTTCAGCACCGAGGAGGAGGCCGCCGAGGCGTACGACATCGCCGCCATCAAGTTCCGCGGGCTCAACGCCGTCACCAACTTCGACATGAGCCGGTACGACGTCAAGAGCATCCTGGACAGCAGCACGCTGCCGGTCGGCGGCGCGGCGCGGCGGCTCAAGGAGGCGGAGGTCGCCGCCGCCGCCGCGGGCGGCGGCGTGATCGTCTCCCACCTGGCCGACGGCGGTGTGGGTGGGTACTACTACGGGTGCGGCCCGACCATCGCGTTCGGCGGCGGCGGCCAGCAGCCGGCGCCGCTCGCCGTGCACTACCCGTCGTACGGCCAGGCCAGCGGGTGGTGCAAGCCGGAGCAGGACGCGGTGATCGCGGCCGGGCACTGCGCGACGGACCTCCAGCACCTGCACCTCGGGAGCGGCGGCGCCGCCGCCACCCACAACTTCTTCCAGCAGCCGGCGTCAAGCTCGGCCGTCTACGGCAACGGCGGCGGCGGCGGCGGCAACGCGTTCATGATGCCGATGGGCGCCGTGGTGGCCGCCGCCGATCACGGCGGGCAGAGCAGCGCCTACGGCGGTGGCGACGAGAGCGGGAGGCTCGTCGTGGGGTACGACGGCGTCGTCGACCCGTACGCGGCCATGAGAAGCGCGTACGAGCTCTCGCAGGGCTCGTCGTCGTCGTCGGTGAGCGTCGCGAAGGCGGCGAACGGGTACCCGGACAACTGGAGCTCGCCGTTCAACGGCATGGGATGA

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Protein seq

MASADNWLGFSLSGQGNPQHHQNGSPSAAGDAAIDISGSGDFYGLPTPDAHHIGMAGEDAPYGVMDAFNRGTHETQDWAMRGLDYGGGSSDLSMLVGSSGGGRRTVAGDGVGEAPKLENFLDGNSFSDVHGQAAGGYLYSGSAVGGAGGYSNGGCGGGTIELSMIKTWLRSNQSQQQPSPPQHADQGMSTDASASSYACSDVLVGSCGGGGAGGTASSHGQGLALSMSTGSVAAAGGGGAVVAAESSSSENKRVDSPGGAVDGAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGTTTTTNFPMSNYEKELEEMKHMTRQEYIAHLRRNSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDIYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILDSSTLPVGGAARRLKEAEVAAAAAGGGVIVSHLADGGVGGYYYGCGPTIAFGGGGQQPAPLAVHYPSYGQASGWCKPEQDAVIAAGHCATDLQHLHLGSGGAAATHNFFQQPASSSAVYGNGGGGGGNAFMMPMGAVVAAADHGGQSSAYGGGDESGRLVVGYDGVVDPYAAMRSAYELSQGSSSSSVSVAKAANGYPDNWSSPFNGMG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0614300 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g42570 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os04g0504500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0019090 RBH 0.0 0.000000 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0019860 RBH 0.0 0.418607 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0019580 RBH 0.0 0.867829 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0019310 RBH 0.0 0.022961 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0019510 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0395200 RBH 0 0.593176 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0018320 RBH 0.0 0.000000 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0394900 RBH 0.0357185 0.2331585 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0018800 RBH 0.0 0.094486 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0018650 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0018770 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0019140 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0019310 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G018600 RBH 0.0 0.964458 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0018540 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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