Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0487550 | OGI:04074090 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:24359394-24360538 | ||||||||
| Gene Symbol | C3H29, OsC3H29, OsCCCH-Zn-9 | ||||||||||
| DNA seq | ATGACAGAATCCACAAAGATCAAGTATTGTCGCGCAGATTCCGGCTCCGGCTCCAAGCCCTTGTCAGCAGAAACAAAGACACGTTTGATGGCAGACGGGAAGAAGATTGACGAAGAAAAGAAAGACGGCACTGCAGTTCGTCGTGTCCTCTTCTGGTTCGCCGTCTTGGTCATCCGGTTCGCGCTCCTGATGGCGATGCACTACTACCACGTACGGATGATGGCGAAACTTGAAGGAACTAATAATGATGGTTTTGGCCTTTTTCTTACATGTAGCCACTATGTTTTAATGGCTGGCTTTATTATAACCAGCTGCATGGGTTACTAGCTAGCTACATGGGTGCCTAGCCGTTTTGATGGCTTTGTTCCAATAATATCGTTAGTGTAAGCTATACCTTTTTAGTATGTCCCTTCTTCTGAATTTAAAGCTTTACTGTAATGAATATTTCTCATATTTATATATATATTGTTTCATCCGATAGTACTGTTAATGCACCTTTGTATTGTTTTCCATTGGGAAGTCTATCTATTTTAGATTTTCGTTATGCTTTGTGCGGTTGTCCTTTCCTGTACTATCATCGTGGAAGATTTACATAATTGCACAGGCTGTTCCGTTACTGAACAATGAGATGGGTTGGAACAATTGGCTAGGGTCTAGTTAGGGGATTAGGGTTTTTTTTTTGGGTGGGGTAAACACAAGTTCGGTACGGGCGAGGAGAGCGCAAGAACAAGATGATGATGATGGGTGAGGGCGCGCATGAACATGTGGCGGCGGTGAGCGGCGTGGAGGGAGGAGGAAGCGGTAGCGACAGTGAGATGGCCGCGCGCCATATACCACCAGCTCGACGCGACGCGGCATTACCTGCCGTCGAACGAGGCGGCGGCGGTGGACGCGTACGCGTGTGATGGGCTTAGGATGTAACGAGTTCAAGGTGCGACGGTGCGCGCGCGGGCGGAGCCAGGACTGGACGGAGTGCCCTTTCACGCGTCCGAGGGAGAAGGCGCGGAGGAGGGACACCGGACACGAGGCCGTACTGCGACTCTGGCACGGCGTGCCTGGACTTCCGCAAGGGCGGGTGCAATCACGGCGACGCGTGCGAGTTCGCGCACGGGGTGTTCGACAATTCGAGTGCTGATCTCGCGTAA
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| CDS seq | ATGACAGAATCCACAAAGATCAAGTATTGTCGCGCAGATTCCGGCTCCGGCTCCAAGCCCTTGTCAGCAGAAACAAAGACACGTTTGATGGCAGACGGGAAGAAGATTGACGAAGAAAAGAAAGACGGCACTGCAGTTCGTCGTGTCCTCTTCTGGTTCGCCGTCTTGGTCATCCGGTTCGCGCTCCTGATGGCGATGCACTACTACCACGATGTAACGAGTTCAAGGTGCGACGGTGCGCGCGCGGGCGGAGCCAGGACTGGACGGAGTGCCCTTTCACGCGTCCGAGGGAGAAGGCGCGGAGGAGGGACACCGGACACGAGGCCGTACTGCGACTCTGGCACGGCGTGCCTGGACTTCCGCAAGGGCGGGTGCAATCACGGCGACGCGTGCGAGTTCGCGCACGGGGTGTTCGACAATTCGAGTGCTGATCTCGCGTAA
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| Protein seq | MTESTKIKYCRADSGSGSKPLSAETKTRLMADGKKIDEEKKDGTAVRRVLFWFAVLVIRFALLMAMHYYHDVTSSRCDGARAGGARTGRSALSRVRGRRRGGGTPDTRPYCDSGTACLDFRKGGCNHGDACEFAHGVFDNSSADLA |
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| Function | Putative zinc finger CCCH domain-containing protein 29 [UniProtKB/Swiss-Prot:Q7XSB2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0487550 | OsNip_04t0487550-00 | Chr04 | 24359394 | 24360538 | + | RAP2018-11-26 | ||
| CDS seq | ATGACAGAATCCACAAAGATCAAGTATTGTCGCGCAGATTCCGGCTCCGGCTCCAAGCCCTTGTCAGCAGAAACAAAGACACGTTTGATGGCAGACGGGAAGAAGATTGACGAAGAAAAGAAAGACGGCACTGCAGTTCGTCGTGTCCTCTTCTGGTTCGCCGTCTTGGTCATCCGGTTCGCGCTCCTGATGGCGATGCACTACTACCACGATGTAACGAGTTCAAGGTGCGACGGTGCGCGCGCGGGCGGAGCCAGGACTGGACGGAGTGCCCTTTCACGCGTCCGAGGGAGAAGGCGCGGAGGAGGGACACCGGACACGAGGCCGTACTGCGACTCTGGCACGGCGTGCCTGGACTTCCGCAAGGGCGGGTGCAATCACGGCGACGCGTGCGAGTTCGCGCACGGGGTGTTCGACAATTCGAGTGCTGATCTCGCGTAA
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| Protein seq | MTESTKIKYCRADSGSGSKPLSAETKTRLMADGKKIDEEKKDGTAVRRVLFWFAVLVIRFALLMAMHYYHDVTSSRCDGARAGGARTGRSALSRVRGRRRGGGTPDTRPYCDSGTACLDFRKGGCNHGDACEFAHGVFDNSSADLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41060 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0487550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018360 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0380600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017080 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0380300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017370 | RBH | 0.0 | 0.0 | 1.631313 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017310 | RBH | 0.0 | 0.0 | 0.0 |
