Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0479500 | OGI:04072830 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:23976077-23979412 | ||||||||
| Gene Symbol | OsFbox219, Os_F0485 | ||||||||||
| DNA seq | AACACATCCTGTATGTGAAAATTTCAATCTTGGACCAAAATATATGTTGTACTACAAATAATAAACATTAAACAGGTCTGATAAATCAGAGAGAAAGCTTTGTCCATCTAAAATTAAATGGAACTAATGTACATTGGACCACAGCCATAAATAGTTAAGGAAACAAATCTTGGTTCATCTAAAATTATATGGAAACAGCATTGTCCGATTGAGATGATGTTTGCACTCTTCTTCTAACATGGCACCGGCTGCAAGGTTCCAGAACAGTCAAATTAACTGTAGATGGAACTTTATCCTCAATGTATGTTCTGATAGCCGCGAGCCCCCTTGGAGCTTCCGTGAGAACACCATCTATCATGGGAAAACACCGCCTATACTTATCTTGATCACACCTAGGACCATAAATGGTATCCAATGTAAGACACTCAAGTGACACCGCATTATTGAGGATATAACATGTTAGTTCCACCAAGCTCTTCGCAGAGCTGAAACCAGTGATCTTCACACTCTTGAGGTGGCCATGGTGGTGTTCAGGTATGTGTCTCAGTTGTGAATCCGTGAAAATCGATTCATTCACCATACGTAGAGTCACCTGACCATGAAAAGGATGATATGCTTGAATTAGACCCAGAGTGATAAAAAAAGCTTTGGAGGATGAAATGAATGAATGAACAACACTAGTGCCTTACATTTAATATCAAAGTCTCCAAGGAAGGAGATGCATTGATAAAAGAAACCAGAGAGAAATAGTCATATGGCCGGGAAATGGTCGATCCTGTTATCATACGAATGGTCAGGTGCTTAAGGTAGATGAATTTGGTAGGTAGCATTGGTGCATCAACCACCTGCACAACAAATATGGCATGTATCAGATTTATTATACACCAGGTATTATTAATGTAATCCGTATATAACATTCCCTAATGTAATCCATATATATGGTTATACTAATGTAATCTGTATATATCGCTGTACTAAAGTAATCCGTATATATTGCTATACTACAACACCTCATCTTTTAGAGAATATATACCTCATTCACTGATTCAATGACAAGAGTTTCAAGATTTGGCATAATGGATGGCAGATTGGCACGAGCATCATGGATTGCACATCCCATGTCTAGTTTCTTCATTTGCAGCGTTTCCACAACTGAGAAGTTAACCCTGAATCCTCTATGGAAAAAACTAGAGAGATTTGGAGCTTTGCTCTCTATCACTTTCAAGCTTGAGCATTCAAAAACACTAAGTCTGCTGGGCTGCTGTAGGGCGAAAGGTATCTTCAGGCAAGTTATCTTCGTGCATTGAGTGAGCTCTAAATGCTCCAAAGCAAGAGAGTTGGAAAGAAGGCACTCTAACTCAGCCCATGTAGCTCACTAACCACAGAGACAGACTTGTTAGGCTTCTCAAGGGGGCAAGTTCAGGTGTGGGATGGAGGGCACAAAATCGAAGTTTAATGTACCGAAGTGAGTCTCGAACCCCATCAGACAAAAGTGAGCATGGGAAGTTGTATTGTTTGTTTGTGTCAAACAAAAAAAGGGTGAGTTCTTCGATCCCTGGTTTAAGAGCAATCTGAAGCCAACTGTCAAGATAACTAGTGCCATCGAACCCACACATGCCACTGTAGTCAAGCTTGAACGTTTTCAAGCTAATGCCTGAGTGGTTCCTGAGAATGCACCCAATTTTTCCGTGGAAATTCTCGCCAAACGCATTTCTCTTCAAGCCAATCGTGTCTTTATTAAAGATAAGATTGGGATGACACCTCCAAGAACGTAGAAAAGCACGAGATACGCAAGCAGCACGAGCAGCTTCACGCATTGACATAAAGGAATGTATACGAGACAATATGTCCTGCATTACACAAACATCAGATAAAAGATCAACATTGATATTGCAAATCCATATGATTACTTCAATTGGAGAAAGAAAAAACAGAAGAATCACACAGAGTAATGTTCTGCCCCAGGTAGCTCTCCACATGAATGCACAGGGTGAATTGCATTACATAGGTTAGATAGTGCAGAGGAACATAACCGTGCTAGGGAAACTCAGTACTGCATAGAGAGGTTTTCCTAACAGTGTTATTTTAGTGGTTTTCTAAATGAAAAAAGAGACAGTTGCTAACAGCTAGCACCAATTAACAACTACATGATATATTTTTACTTGCATTAGTAGTTGACCATAATGTTTCCTTGTTATTGCAAGTAGCACCCAATTATTGTAAGTTATCAACATGGTACTAAAGCATCCCACTTATGCATCAAATTCTGGAGAGATGTTAGCAACCTTTGCAGAGAGAACAGTCACTAATAGTACTAATAATGTAGGACTGTGATCAAATCGCAGCACTAAAATAATCTTTGCTGTTTATAAATGATGCTCCCTCCATTTAGTTTCAAATTGTACAAACCAATGCCATATAAAACAAATGGAGGGAGTAATATACAGCCAGCCTATGGGTGAGACGTGGTGATATTATGCTTGCAATCTAAGCCTGCATCATCAGAATTCAATGCCTCGTACCTCAGGAAGATATGGGATTGAATTTCTCATCATTTTGCCAGCTTGAGAATGACCATCGCCATCATGTTCACACGGTGATATCTTTCTTTTACCCGTTGAGGCAATAAACCCAGCTGCTGCGACACGAAAGGGATTGTTATGGTAGCAGAGACATGAATCGAAGAAAAGCAAGAAAAAGGCACTTCAATCCCCTGAGATCTCACAAAAAAAGGAGCTCAAACGAAGAATGTGGAAAGGCAATAATCTGAGCTGTTCACCAAAGTGAAAAATTTGAAGCCAAACAAATGAAAAATGGGTATCCGGCTCACATCAAACCAGATGAGCCAGTTATTAGTTAGGCAATAAAAAGAGCAGCTTTTTATGAGCTGACAATGACAAACACATCTACCGAGCCAAACGTGACAGAAAAAAAGATGGGCGAAAGAGTTGTTCCTGTTCAGAGAGGAAGGAAGCTTACAGCGGGCTCGGATTTGCGGCCGGCGATGCCGCCGCCGCCGCCGGCCGCGCCGCTGGGACATGAGCCGGTTCGGCGCCAACATCCCCAAAGACGAGCTCACGAAGATACCCCCTTCCTCCCTCGGATCTGACCGAGAAATCACTTCCGTTTCCCCCTCCTTCAGATCTCTCCTCTTCTCCTCTCCTGCCAATTTGCGGTTCGGTTTTGAACTCAAATTCGCACCGGCGACGGCGACGGCGACGGCGCCGGCGAACGGCGGGCGGAGCTATCTACTCGCCTACAGAACGACAAAAGTAACCAAACCCTATTCAGTGTGGGGACTGGGGAGTGGTTTGATCTTCTTTTTTTTTTTTTTTT
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| CDS seq | ATGTTGGCGCCGAACCGGCTCATGTCCCAGCGGCGCGGCCGGCGGCGGCGGCGGCATCGCCGGCCGCAAATCCGAGCCCGCTCAGCTGGGTTTATTGCCTCAACGGGTAAAAGAAAGATATCACCGTGTGAACATGATGGCGATGGTCATTCTCAAGCTGGCAAAATGATGAGAAATTCAATCCCATATCTTCCTGAGGACATATTGTCTCGTATACATTCCTTTATGTCAATGCGTGAAGCTGCTCGTGCTGCTTGCGTATCTCGTGCTTTTCTACGTTCTTGGAGGTGTCATCCCAATCTTATCTTTAATAAAGACACGATTGGCTTGAAGAGAAATGCGTTTGGCGAGAATTTCCACGGAAAAATTGGGTGCATTCTCAGGAACCACTCAGGCATTAGCTTGAAAACGTTCAAGCTTGACTACAGTGGCATGTGTGGGTTCGATGGCACTAGTTATCTTGACAGTTGGCTTCAGATTGCTCTTAAACCAGGGATCGAAGAACTCACCCTTTTTTTGTTTGACACAAACAAACAATACAACTTCCCATGCTCACTTTTGTCTGATGGGGTTCGAGACTCACTTCGGTACATTAAACTTCGATTTTGTGCCCTCCATCCCACACCTGAACTTGCCCCCTTGAGAAGCCTAACAAGTCTGTCTCTGTGGTTAGTGAGCTACATGGGCTGA
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| Protein seq | MLAPNRLMSQRRGRRRRRHRRPQIRARSAGFIASTGKRKISPCEHDGDGHSQAGKMMRNSIPYLPEDILSRIHSFMSMREAARAACVSRAFLRSWRCHPNLIFNKDTIGLKRNAFGENFHGKIGCILRNHSGISLKTFKLDYSGMCGFDGTSYLDSWLQIALKPGIEELTLFLFDTNKQYNFPCSLLSDGVRDSLRYIKLRFCALHPTPELAPLRSLTSLSLWLVSYMG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0479500 | OsNip_04t0479500-01 | Chr04 | 23976077 | 23979412 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTGGCGCCGAACCGGCTCATGTCCCAGCGGCGCGGCCGGCGGCGGCGGCGGCATCGCCGGCCGCAAATCCGAGCCCGCTCAGCTGGGTTTATTGCCTCAACGGGTAAAAGAAAGATATCACCGTGTGAACATGATGGCGATGGTCATTCTCAAGCTGGCAAAATGATGAGAAATTCAATCCCATATCTTCCTGAGGACATATTGTCTCGTATACATTCCTTTATGTCAATGCGTGAAGCTGCTCGTGCTGCTTGCGTATCTCGTGCTTTTCTACGTTCTTGGAGGTGTCATCCCAATCTTATCTTTAATAAAGACACGATTGGCTTGAAGAGAAATGCGTTTGGCGAGAATTTCCACGGAAAAATTGGGTGCATTCTCAGGAACCACTCAGGCATTAGCTTGAAAACGTTCAAGCTTGACTACAGTGGCATGTGTGGGTTCGATGGCACTAGTTATCTTGACAGTTGGCTTCAGATTGCTCTTAAACCAGGGATCGAAGAACTCACCCTTTTTTTGTTTGACACAAACAAACAATACAACTTCCCATGCTCACTTTTGTCTGATGGGGTTCGAGACTCACTTCGGTACATTAAACTTCGATTTTGTGCCCTCCATCCCACACCTGAACTTGCCCCCTTGAGAAGCCTAACAAGTCTGTCTCTGTGGTTAGTGAGCTACATGGGCTGA
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| Protein seq | MLAPNRLMSQRRGRRRRRHRRPQIRARSAGFIASTGKRKISPCEHDGDGHSQAGKMMRNSIPYLPEDILSRIHSFMSMREAARAACVSRAFLRSWRCHPNLIFNKDTIGLKRNAFGENFHGKIGCILRNHSGISLKTFKLDYSGMCGFDGTSYLDSWLQIALKPGIEELTLFLFDTNKQYNFPCSLLSDGVRDSLRYIKLRFCALHPTPELAPLRSLTSLSLWLVSYMG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.595164 | 0.716379 | 0.879723 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0479800 | RBH | 1.772034 | 1.603051 | 3.801438 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g40330 | RBH | 0.521652 | 0.464158 | 0.422131 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0479500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017190 | RBH | 0.470673 | 1.328003 | 1.338692 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017980 | RBH | 0.069655 | 1.152372 | 1.551710 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017680 | RBH | 0.461241 | 1.268822 | 3.093150 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017410 | RBH | 0.198542 | 0.113174 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017630 | RBH | 3.784908 | 0.830138 | 19.699589 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0373400 | RBH | 6.9488985 | 16.5083075 | 16.2415915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016420 | RBH | 0.117417 | 0.581535 | 0.663101 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0371900 | RBH | 6.2531135 | 14.2715655 | 22.8708325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016950 | RBH | 0.244120 | 0.171973 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016800 | RBH | 0.713790 | 6.972095 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016820 | RBH | 1.149698 | 9.234671 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017310 | RBH | 1.061455 | 0.676281 | 1.546104 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017420 | RBH | 0.379350 | 2.795757 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016690 | RBH | 0.0 | 0.405762 | 2.103177 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016650 | RBH | 0.679064 | 13.395018 | 4.805157 |
