Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0463300 | OGI:04070590 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:23133289-23137358 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGACATGCTTCTTAATGCAATGATTAATATAGGTGTATCTCCAGATGATATCACATACAACATTCTCTTGGATGGGCATTGCAAGCATGGAAAAGTTACAGATATTGAAGAACTGAAGAGTGCAAAAGGAACAGTGCCAGATTTGGGTGTCTATACTTCTATAGTCGGTGAAATTGTCAAGAAGAAAACAACTAAGACTTACCATGACAGATAACATTGGTGGGCAAAGACAGAACTTTTCCAACAGTAAATTCCATTAATCTAGTAGATGGTACAGAACACAATATGAATACATGTGCACTGCAACCAAGGAAGACGAATGACATGACTGTAGTCCAATCGGCATGCACACGTCATGTTTGAATAGAGCAAGCATGAGGAATAAGTTGGTTTTGAAGTATTGGCAACCTGATTCGTTCCTTGATTTTGTATACATATATAATTATATTTCCTCCATCAGTGCCCATTTTTCGGGATGCTGAGAAATGTTTACATGGAAATGAGGTGCTCTGAACAATTGGGGTTCATACCGTACAACTGATGCGTTCATTACTTTCTACAGGGCTCAAAATGATTGTCCTGGGCTCCTGGCTGCATGACAGAGTAACAGAGTTGCCTTCACTGATTCACAGCTAACTCTAGCAGGTCAGGCAGACGGTCACAATTAGAAGTAAATATTTTTCTACTTGTGACTTTATTTCACCTTTATTTGTGTTGATGAGAACAACTAAAAGCATTATTACTCATGGTATGTCCTATGATGCATATAACTTTCGTGAGTTTTCACCTGAAGCCCCTGTGTGCAGCTAAACATGTGCTTGATAGGTGATATGATCACTCATGTTAATTTCATGTCTGATAGATGTGTGCTCTAATTTAAATTTGCTTGTCACATTGATCAAAATGTGAGTAAACTGTCAAATTTGTATGTTGGATGTTCAACTTGCAAGGTGGGGAGTGGGGACATAGAACTTAAAATAGCATGCTTTTATTTCATGTTTCCCAAAATTTATTCCTTGTTACATGAAAGGTAAAATACATATTCTTAATATGAGATTGTGATTCATTGCAGCTTCGTTGGATTCAGTTCTGCCTACTGAAACTTCAGACAGGAACACATGAGGGTTCAAATCATCTAGTTTGCACGGCCTTGGCCATTCCATATGCCGCAGCAGAAGCAAGCGCACCGATAATAGCAGTTTGGACAGCGCTGAGGAATGGACGGTTTCCAGTAAAGCGACCCTTGATGTATCCAAAGAAAAGTAGTGCAACCAGCGTGACACCGACAGATGTGAGCATGGCGTTCTGTGCTGTGGAGATAAACATGTAGGGAAGGAGAGGGACCAGTCCACCAATGACATAAGATAGCGCAATTGTTAAAGCGCTCTGTATAGCTCTTTTAGGGTCTGGTTTCTCCAATCCCAGCTCAAACCTGCATACATTGCTCTGGTTAGTTAAGTTGGTTTGATAATTCCAAATCAATTTTTATATTTTATATGATTGAAATCTTGCTGTTTACTAATATATGTGTGGTTTTCATTGTTGAAAGCTTCTTATATGAGCTATGGCAAACGCATACAGGATAATCGAAACATTTCTGATTAGTATCTCAGACACCATCAGGACATCAACATTTGCTTTCTAGTATAACTGATGAAGAGATTGACAAAGGGAGTAGCAACAGTTGGTCATATTACCTCATCATGAAGTCGAGCCAAGCTTGAGGATTCCTACGGAGCCCGTCCACGACAGGGCCATACTCATGCGGTTCGAGCCCGTACTGCGACATGATCTCGCCAATCTCAGCAGCCTCTGATCGATCAACCAGGAAACCAAAAGTTTTTTAAACAAAGTGAGGCAGCTTTCCTGCTGGTCGCAGATGGGAGGAATCTTAGCGACATGTCTCAGCATATGGTATCTTGTTGTATCTGCTTATCGGCTTACCAGTGTCCGGGACGGCGATGATCTCCTCCTGCTCCCTTTTCATCTCCCGCTGGTAATGGTCTGCCTCGCTCTTGGCCGCGAGATACCTACCACATGGTGCAATTGCGGGTAAGTGTCATGCGTTTGTGCAATTGCGCGCGCCTTTTTTCGATTTGAAAACAATGTGATCTTGTCTTGTTCCCAGTTTAAAGGGGGGAAAGTATTATTCTCCACTTTCTTAGGCCTAAAAGTTGTGACACTAACACAAAGTGTGCTGGAACAGCACGTGGTATAGGGCCACACACGTGTCCATCACGAGCTAACTTTACTTTAATTACTCCTTTTTCGGGCTTTGGATGACAGGAGTAATCTGCAACTGGGACTGTAGGGGTGGGAGCTAGGCAAAGAACAGAGAAGGTCAGATACGCCGTGCACAATCTGCAGAGCAACGAACACTATGGGCTTTCCTAATTGATTTTTCATGAGGTAACAAGGCAATATTCAGCAAGTACACCTGTGAATCTGTGAGTATATTCAGGCAGGCATACCTAACTCCCATTAAAACAGCCAAGAGCACGGTAACTTGCTTGCTGGCCATTTTTTTTATTAATCCATTACTCCACTTCTTATATTCAGCAAGTAATATGTTTTAAGCGCGAGCGCCTAATACGATTTACAACCATCTCTCCAGTCAGTCTCCACTCTGTACTGCTTATGCCTTGTCCACATCTCCCCTGTTCTACAAGGTCGTGGAAAATATTCTAGGCTGTAGGGAAAAAAACCGTAGACAATCTCGTTCTTTTCTCCAACAAGAGTTGGATGAACATTAAAATTTTTTGGCACGTTTTTCAAATTGCTTAACGTACGTTTCGTGTGAAAACTTTCTATAGGAAACTTGCTCTAAAATATCATATTAATCTATTTTTCAAGTTTGTAATAATTAAAACTCAATCAATTATATGTTAATACCAAAAGTTTTGCGTGAAAAACTTAATCTTCATCTCATCTTAAGAGATCCTTTTGTTTGAAAGAAATTCCATAGGATTTTTTTATAAATCATTATTTATGATTTCATAGGATCTTGTAAAAATCATTGGACAAACCAATCGTATGAATTGTTTCCTATTCTCGCAGACACGTGTTAAGCGTCTCTGCAAAAGACGGAACCCGATAATTGTACGAGCAAATATATGCGTGCATGGCGTATCAAAATTTTTTGTTTCATCATGATCATACTGCAGTACATTCCGATTTCAGGTGATTAATAAATTACTAGTATCATGTTATGGGCTGTGGCCTGTGGGTCCCCGAAAGCTTTCTATTGTATTCACTGACATACTACTGCACCCTGCCGCTGGGTTTCCTGTTTTGGTAATGAAAAACTCGGAACCCCTCTTTAAAAAAAAAAGAAAAGAAGAGCAAATCTATACGACGAAACTGACATATTGCTAACTTCGCTAGATTAATCAGGGATTCAGGGGTGCAATGCATGGACAAGGAACACACAGAGAGATGATGAGTGTTTAATGTTTACCCTCCGAGGCCCATGGAGATGGCGCCGGCGGCGACCTCGGCGAGGCCGGCGGTGAGCACGAGCGAGGATGGCGCGCTGGCGCCGGAGAGCCCCGCGGCGAGGGCGAAGGGCACGGTGAGGCCGTCGGAGACGCCCATGATGACGTCGCGGACCACCTCCCCCGACGTGAAGTGCCGCTCCGGGTGGTGGTGGTGGCTGTGGCTCGCCGCCTTGTCCGCCAGCAGCGGCAGCCCCCCGCCGTCCGTCGCCGCCGCCATCGCCGCCGCCGACTCGCCGAGGTAGACCGTAGACACGAAGAAGCGAGACTGGTGGATGGATGGAAGCGGTCAGGCGACGCACGTTTGAAGAGGTGGTTTATTTGGAGTGCTGGACTCTCTGGCCCTGTTTATATAGAGAGAGGGTTTTGAGAGGCATACGGTATGGTCTTCTTTGGCTTCAGAACAAGAAAACGAGGCATGGTCTTCTGATACTGCTACTGTTTCTATGGTGGGCCCTCGTAGTCAGGCACAGAGAAGCCAACTACGTGAATCATGAGACGGCATGTGTTATACTCATATCAAGTGTTAGAAAAATCTAACTCTTCAGATCCAAAGCATCACAAGCCATTTATCTT
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| CDS seq | GACATGCTTCTTAATGCAATGATTAATATAGGTGTATCTCCAGATGATATCACATACAACATTCTCTTGGATGGGCATTGCAAGCATGGAAAAGTTACAGATATTGAAGAACTGAAGAGTGCAAAAGGAACAGTGCCAGATTTGGGTGTCTATACTTCTATAGTCGGTGAAATTGTCAAGAAGAAAACAACTAAGACTTACCATGACAGATAA |
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| Protein seq | DMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTVPDLGVYTSIVGEIVKKKTTKTYHDR |
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| Function | Putative pentatricopeptide repeat-containing protein At1g09680 [UniProtKB/Swiss-Prot:O04491] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0463300 | OsNip_04t0463300-01 | Chr04 | 23133289 | 23137358 | + | RAP2018-11-26 | ||
| CDS seq | GACATGCTTCTTAATGCAATGATTAATATAGGTGTATCTCCAGATGATATCACATACAACATTCTCTTGGATGGGCATTGCAAGCATGGAAAAGTTACAGATATTGAAGAACTGAAGAGTGCAAAAGGAACAGTGCCAGATTTGGGTGTCTATACTTCTATAGTCGGTGAAATTGTCAAGAAGAAAACAACTAAGACTTACCATGACAGATAA
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| Protein seq | DMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTVPDLGVYTSIVGEIVKKKTTKTYHDR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.591921 | 0.297367 | 0.397647 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0582300 | SBH | 0.207459 | 0.566952 | 1.189695 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g38930 | RBH | 0.090220 | 0.521046 | 0.083938 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0463300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016120 | RBH | 0.301810 | 0.721724 | 1.494115 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016860 | RBH | 0.0 | 1.042987 | 0.691007 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016590 | RBH | 0.653352 | 0.0 | 2.796861 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0016550 | RBH | 2.643524 | 0.0 | 3.807263 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0360900 | RBH | 1.346867 | 1.303448 | 0.599069 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015350 | RBH | 0.079133 | 0.087649 | 0.564644 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0359300 | RBH | 1.5895905 | 0.8902405 | 2.0201965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015900 | RBH | 0.056319 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0015790 | RBH | 0.299018 | 1.650837 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0015760 | RBH | 0.0 | 6.226726 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016280 | RBH | 0.179780 | 0.000000 | 0.396056 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G015580 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0015650 | RBH | 0.398146 | 0.0 | 1.068027 |
