Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0450100 | OGI:04068550 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:22428835-22431568 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCCCCCGCGACAATCGCCACGAATTCCCCCGCGCCGCGCCATCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGGTCCGCCCTCCGCCGCCGCCCTTTCACCTGATCTGACTTTTTTTTCCTAAGCGGATCTGAATTTGATTCCCCCCTACTCGTGTTCATGGTCTTCCTCTGTTCTTGGTACAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGTAGTATTGAATTTTGGTCTAAAGAATTAATTCATGGACTAATTTTCATTCAACCGTATCATATATGGTGACAAGTTTTCGATTTAAATATACCAGGGCTCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGTAAGCAATTTGTAATTGTTTTTAGTTGTTACTAGAACATTGAAGGGTTGAAATCAGCTCGATTAATTTCTTGCTGTCTTTAAAACAGCTACATCTTCGTTTAGCTTTTTTATTTAACTCTGTATTTCCTCTGCAGGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTACTTCACTATCTTTTCTAAGGAACAAAAACAGATTGCGTCGATGTTATTCTAGTTTGTTGTCGCCACTTTAGCATATTTCTTGCTAGCTTGTAAGTTGACCGTTGCTTCCAAGGCGGTGCCTTCGCCGCCTTTTTTCTTTAAAAAAAATAACAGCCAGCGTATCTGGAATGTTTATTGGCCCATGTTTATTAGTTTAAGGCTGCGTGCATAAAAAAAAACTCGCATCAACAGTGTGCTTTTATATTTCTAATAAAAAGAAAAACTATGCGCTTCTCATGCCATCATGTTTTTCAGTCAAATCTTCCAGAAGCTCAACGAATTCTTCACTGTTATACTAATTGAGTGCTTAACAATTTGATAACTTAGACTATGTATAACAATTTTGTGAATGAAGGAGCGCTAATATATAAACAATAAATTTAGTGGTCTGACTACGTCCTCTCCTATTCAGCGAGTAATTATGTGCTAATACGCTCGGGTCAATTTCATGCTACTATTCAGTTAATTAAATTAGAAGCCCTCAGTTCCGTTCTAGTACCATTTTCATGTCAGCTGTTCTTTAGAAAATTACGAGAAGTACCGAGTGGTTAGAATAATGGATGGTCACTGAGCAAGAATTTCAATCTTATTTGCAGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGGTAAGCTCATCTGTCCTGTAGGATTTAGTTCATTCAGGGAGTGGTTAGCCCACCGGTGTACCAAAATCGATGCTTAGTACTAAAAGAGTTTTAGAAGAAACATGCGAAAGAATTTAGAAGAAACATGAGAGGAAATTCGTCGTTGGAGGCCGCTGAAACCAAAAATATGTAGCTGGAAAACAAACGTTGTCATTGCTCTGTTGCAGTCTAGTTCTGTAACCTATAACTTTGTGCGCTTGTGAAACAGAAGAACGTATGCATTACAGTGAGCTTTAGTTTTTTTTTTAAGGAATCAGCACGAGATTGTGCTATTTTATTAGATATAAAATACATCTCCTAGGGGCAAGAAAATAACTGTACATAAACGCTATGATTAAGTTGGGAGAAATTCTTCGAGTCGCCTTGCGTCTGACTTGGCTCTTGCCTCTTTGTTTATTTTCGTCATAAGGTTGGGGGGGGGGGGGGGCGCTGTTTCCTTGCGCTCGAAGATACTTTGGTTCCTTTCTTTCCAGATTTCCCAGGCGACGAGTAGGATTAAGGATAGTAGCCCTTTTTGGACACTTCCTTTTTGTTAGCTAGCATTTTCCACCATTTGTGGACACTTTGGCATGGCTCAAGTGGCTCGGATCCAATTGCTGATAACCAGTGAGCTTTAGTTGATTAGTGAAGTGAACTCTTTCCGCCGTAATATCAGTGTTAAAACTGTCAAAGTAACACCATTCTTAATATTGTTTATGCAGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTT
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| CDS seq | ATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGCTCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGA
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| Protein seq | MGSLGGEEGARPAAAAEGARRPRFLCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADAPFPAEGKSDVEGIFDPPYYEWFQFDKNFTEYRNFDECLNYIEELMIKEGPFDGLMGFSQGSILSGALPGLQEQGLALTRVPKIKYLIIIGGAKFQSPTVAEKAYANNIKCPSVHFLGDTDFLKTHGEKLIESYVDPFIIRHPKGHTVPRLDEKSLEIMLRFLDKIEKETALEHSSTDVDEKEMYL |
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| Function | Esterase AGAP003155 [UniProtKB/Swiss-Prot:Q7QBJ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0450100 | OsNip_04t0450100-01 | Chr04 | 22428835 | 22431545 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGCTCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGA
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| Protein seq | MGSLGGEEGARPAAAAEGARRPRFLCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADAPFPAEGKSDVEGIFDPPYYEWFQFDKNFTEYRNFDECLNYIEELMIKEGPFDGLMGFSQGSILSGALPGLQEQGLALTRVPKIKYLIIIGGAKFQSPTVAEKAYANNIKCPSVHFLGDTDFLKTHGEKLIESYVDPFIIRHPKGHTVPRLDEKSLEIMLRFLDKIEKETALEHSSTDVDEKEMYL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0450100 | OsNip_04t0450100-02 | Chr04 | 22428961 | 22431568 | + | RAP2018-11-26 | ||
| CDS seq | GGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGCTCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGA
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| Protein seq | GSLGGEEGARPAAAAEGARRPRFLCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADAPFPAEGKSDVEGIFDPPYYEWFQFDKNFTEYRNFDECLNYIEELMIKEGPFDGLMGFSQGSILSGALPGLQEQGLALTRVPKIKYLIIIGGAKFQSPTVAEKAYANNIKCPSVHFLGDTDFLKTHGEKLIESYVDPFIIRHPKGHTVPRLDEKSLEIMLRFLDKIEKETALEHSSTDVDEKEMYL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.283567 | 5.024558 | 27.591627 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37710 | RBH | 3.145631 | 2.936641 | 6.322647 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0450100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015990 | RBH | 1.096366 | 10.379785 | 9.475158 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015710 | RBH | 2.027846 | 38.617973 | 28.216778 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015290 | RBH | 0.275875 | 0.768434 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0350200 | SBH | 1.7758315 | 30.7371465 | 3.2767815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014460 | RBH | 0.187148 | 3.616120 | 7.650021 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0347000 | RBH | 108.1126175 | 138.568077 | 6.2960925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014800 | RBH | 2.110411 | 26.264385 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014830 | RBH | 14.801206 | 15.459179 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015440 | RBH | 0.912082 | 2.645608 | 9.276353 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014690 | RBH | 0.303257 | 8.966394 | 9.170277 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
