Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0446700 | OGI:04068060 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:22267085-22272315 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATCTTGTGAACTGTCTACACTGGTAGAACATTTATTGGCATGTCGACATGCATACATGGTTATTGGTCAACGTTACACGATTAAGAAAAAACTGACAAGGTAGTCCAAGACATATACTGCAGTTCATTTGTTTTTACCTACTATTGCTGAATTCAGTAGTACACATACATGATAGTAGAATTCCCAAATAGAACTGGAAATAGAAAACTGGATTGTACAACTGAAACAGTCGTATATACAACCTTTTCAAGTTTGTCAGAAGACAGGTTTTCTGCTATTAGGCATTATAACCACAAAGACAGCATCAGATATATCCAGAAACCGAAACTGCGACAGAACAATCGAACTTTATCCCCTTTCAGTAGAATTTACACACACACACACACACAAAAATCTAGAAATCCCCTGTCCCAATCCTCACATCTTCACCTAGACATGCATTTGAATAGCCGGGCACATCATACGGATCGAGGGTGGGGGGGAGCACACCACTACATTCCGCTAAATGCATGCTTAAAGACTTTTTGGCAGAGCCTAAAGAACAAAGAGCTTCGCCTTCGGTGGGAGTGCCTCGCGGATATGAAGTTCGATAGTCTGACGAGCAATACTGCAGAGATAGTCGTTCTTAATGTCACTTTCCAACATTCTTTCAGTTGTATCCACAGTTATAACGTCTAGTGCAGTTGCATTTTCCACAACATGTAAAAGAAACTCAAGTTGTCCTCTAGCCCCTTTGAATCCTGTAACACAAAGGTTCTTCAGATATTTGTATTCATCGTGCCCAAGTTCATGTCTAAGGGGGCCTTCTTGTGCAAACCATAGGCTATGACCGCTAGCAAACTGCAAAAAGTTCAAAAATATCAGGTTAACAAACTTCAGCTCAAAAAGTACAAATTTCACTGTTAACAATAAAGACAAAAACATTGAAAGAACGTCTGGCACTGAGGGGCCATAACATAACTAAAAGTCTAAACCACATATGGAAGTAACTAAAACATGTTTCCCAAATATTTACTTTACTGGAAGTATGTGTAGCATTTCATTAAATATATGAATATATTTTGATAGACTAGATTGAACACATCAAAGAAATAGGATATTTGCAAACAAAAGGACTGTTTGAGAACACCTTAGTTCATTGAATGACAGATTTCTAGCTTGACTATGTAACTAGATACAATCAATTAGGAAGCCCTGTTAGAACATCAATGATCCATTAATATGTTATGTTGTGTACTACCTCTAATAACCAAAATATGTTTTGTTGTGATGTTTGGTTCTGTTCCATAGGTAAAAAGATGTAAACAGAGACTGAAATCACTTTACTACAGCTTGCCAACAATTATTGCAATGCTCTACCATGTAAATATAAAACTAACTAACAAATTTACCCAACTTAAATGTAAACTAACAAACACAATCATGGCACATTCAATAGTATTTTCTAACGTTGAGACTGAGAATTAAGTATCACAAACTGATATTGGTGCTCTTATTTATTCCACATCTCACCATCTTTCCTCTACTAAGGTTATAAAGTACTAGGTCCCATGTATTACTGAGAATATGAAAGACACTTGAACAATACCACACATGCTACAGTACCTAGTGCACAAATAGGTATAGGCCCACAAAAAGTTTTGATTTGCAATGATACTTTCACCAAACTAAGTATATATTTAAAACAATACCCATGGTCAATCTTACACTGTTTCGACACAACATGTTTCGCTAATCCTTTTTATGCATGAAGAGCTTCAGTAAATACATAAACAAGAGAGCTATCAAATACTGAGTAGCAAAGACAAAATGAGAAGAGTACTTACATGCACTTCCACCTTTTCAACGAAGGGTGCAGCCCTCATGACATAAGCTAAGTACAGAATTTTGTCGGAACCATGAGATAATATGTGCGCAAACAATTGTATGTGTTTGAGACAGGAAAACTTCAGTGAGTTATCTAACGACCATAGATTCTGAAAGATTAAAAAAAAAACAAATATCATTCTCCAAACAGTGCTAGGAAAACTGAATTTTTAGTTCACAGTTGTTGAAAGGGAAAACCTCCAGTTGTAGATCAGGAATACATAATGTCAGCTTGTGGACATTTGGAAGGCCATGGAAAAGGGAAGCAACAACATGGTGAAAAATGGCGTCAAAAATGAAAATGTGTGCATTGACCAGCTTTGACGTATGATTGAGGACAATTGGAACAAATTCACCCTCATATATAAAGGTAGAGAGTTTTGTAGCGTGGAGCTCTATCTTGGTTATGACACAGCAACTAATAAGCAGGTAGGCTAAATGGGACATCGGACGATCTACCCTAAGGTCATCCTTCAGATGGCATCTGACCATGCTCAACCACTCAAGACAGCAACAGTTGCACAACATGTTCTCAAGTTCCTTTCTTGTAACATGCACCAAATTAAGCTCAAGCTTCCTTAGGTTTGGGAAACCTCCGAACCAGGAAGGTGGTTGCAAAGAGATAAAGCTAAATTGAAGATGTTGTAGACGGCAAATGCTTCCACTGTCTAAAAGTTCAAATGGAAATATGAACCGATCGTCACAACGAGCAAATCTAATAGGCACTAAATCAAAAGATAGATGTTTTGTCCTCGCTGACACAGCAAAACTAACCCACTTATTCAGATTATCAACTAGAATGCTGTCAAATTCAAACTTAATTCCAAATGCTTCCACCATCTTTCCTTGATAATTCTGTAGAACTTTTTCAACATTATTAATGAATCTCTGACAATATTTATTTTGACCACGCCTGCGACTACCACACACTGCTCCACCATCAAGAGATATTTTTGAGCGAAGCGTCCACATGGATCTCCACTTACTTGATAAAACACTAGTCCTTATTGCCTCTTTCTGAGGCAATTTTGATAAAATTGTGCATATCAAATCCTGAATTGAAAGAACAACATACCTTCAAGTTAAGAAATCCAGTACATAATTCAATATGAACACAAAATGGGGAAGAGAAGATACTGCCGGGAGGTCTTCAAATTGAAGATTTGACTTCCCTTTCTCACTTATTTCTTTACCATGGGTAGGTTTCGGTGTTGTCCTTTTGCACATTAGATACTTCCCCATTTTAAGTACAAAATTAATAAAATGCAGCTCCTAAAATAAAAATAAAATGACATTACAATATTTAATAATCAGAATAAGTGAAGAACATAAAATAACTAAATGCAATAAAATCAGGTTGGCACGGGTTTCTTTGTAAAATAAATGTTTTCCATTTTGACATTATGCAAAAGCGTGACTATAGGCTGTTCTCTGTTATTTTTCCAGTGTAATCACAGGTTGGCGTATTTCCACTCCAATTAATCAATAACCCATTCGCCCTTGACATGTGCAAGAGAGGAGGAACATGAGCATGCAGAGATTTGGATGTAGAATAGGTGGTTACATTTTTGCATGGGTTAAGGTTGCTGCTATTAATGGATCTTGTAGTTTGGTACAAGTGCAGAAAGGATTGCTTTTTTACGAATGTAAGATGTAATTCTGTTATTAGTGGATCTTGTAGTTTGGTACAAGTGCAGAAAGGATTGCTTTTTTTATGAATGTAAGATGTAATTCTGTTATTAGTGGATCTTGTAGTTTGGTAGAAGTGCAGAAAGGATTGTTTTTGTACGAAGGTAGATGTAATTCTGTTATTTCTGGGCATATGTAAGCAGGATTGTTACTACAGTTCTCATTGCCGTGAGTTGACATGGAAAATCTAAGATATGGGAATCTTACAGCGAAAATCTAAGATACAATTTTGGATTAATGCAGTTTATGTTGTTACCACCATGTGGATGTGTCTTTCTTTTTCTTTCTGTGTAAAGACTGTCTGCTGTTAGGCTTTCTTCCTAAGCCAGGTCAATGGAAATTTAATCTGTTCTCAATAAAAAAAGAAAGTTGGTATTGAGATGATAATTTGGGGGGGGGGGGGGGGGAATATGAATAGACTAATTAATTACTCACTAAACCCTCCATGTACACATAGAGATAGGACATGATCCCTCCATGTGCACAGAGAGGTGGACCATGATCATTCAGAGATTTGGATGCAGAGTATGGGTGGTCAGATTCGTGCATGGTATAAAGTTTCTGATATTAGTGAATCTTTAAGAATTATGTAGAACTGCAGACAGTAAGGTGTTCTCTACAAATGTAAGGTGTAATCAAGTCGTTTGCAGATTCTATGTGAGCAGGATTGTTGCTGCAGTCCTCATCGCTGTGAATCAGAGAGAAAATCTAAGATGCAGCAATCCTACGGCAAAAAGGAGTCGATTTGTGACCATAGTTTGCGTTAAATATCAGTGATGAAGCATAAGGCAATCACAGTGTGACTTTGCATGATATGAATTACTACACATTTGCTTTGTACCATCGATCGGACTGCGCATTAATGCTCGGAGTGAATAGAACACGCAAATAGTAGGAGAGAGGCGATATAGACGAGGGAACCAAACCTGCGGAAGCTCACTGGACAGCATCCTGGAAACGCGAGATGCTGGAAGGCTGTTCTCCTTACCCCCAATAAACTCCAATGAACTTCCTCCAGTGAACCCCACCCCCTCTTCTTCTTCAATAATAAACAAGCAAACAGTAAGGGTAAAACCTAGATTCTAGGACTGGCGATTCTTTGCAATTTATTTGGAGATAACAACGAGAAAGACGCTGTGCCGTACCCGAATGCGAGAGGAACTCGCGTCAGGCTAGGCTAGGCTAGGCTTGGTTTGGTTGAGGCCGGGACGGCAACCAGGCAACCAGCCGGTGGAGTTCCTGTCGAACCCGTTCTTCACCGAGCCTGTGCATCGAATTCGCAAGCTCGGAGGTTTCCCGTCCAACGCCGGCGTCGGTCATGCCCCGGCGAGAGCACTCGTCCCTTCGTCGGCCATGCCCGCGAGCCTCGTCGGGCCACGCGGGGAGGAGACGGTCGGAGCGGCGTTGGGGAGGGAGACCATCGAGGCCCCCCCAATACGCGAAGCACCGATCCCCTCCTGAGTTCCCTCCGCTGACGCCGACGCCGACGCGAGATTCAGCAGGATCCGACGAGCCGCCGAGGGAAGCAGCGGCCAGATCTGGACGAGGCGGAGCCCTCCGACCGGTCGACGGCTGGCGGTCGGTTCCTGTGCCGGAGAAGGTAGGAGAGGCGGAGGTCGGGCGGGCTCCAGCGGAGGTTGGCTGCGTTTGTTATCGAGGAAGAGGAAGAAGAAGC
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| CDS seq | ATGATATTTGTTTTTTTTTTAATCTTTCAGAATCTATGGTCGTTAGATAACTCACTGAAGTTTTCCTGTCTCAAACACATACAATTGTTTGCGCACATATTATCTCATGGTTCCGACAAAATTCTGTACTTAGCTTATGTCATGAGGGCTGCACCCTTCGTTGAAAAGGTGGAAGTGCATTTTGCTAGCGGTCATAGCCTATGGTTTGCACAAGAAGGCCCCCTTAGACATGAACTTGGGCACGATGAATACAAATATCTGAAGAACCTTTGTGTTACAGGATTCAAAGGGGCTAGAGGACAACTTGAGTTTCTTTTACATGTTGTGGAAAATGCAACTGCACTAGACGTTATAACTGTGGATACAACTGAAAGAATGTTGGAAAGTGACATTAAGAACGACTATCTCTGCAGTATTGCTCGTCAGACTATCGAACTTCATATCCGCGAGGCACTCCCACCGAAGGCGAAGCTCTTTGTTCTTTAG
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| Protein seq | MIFVFFLIFQNLWSLDNSLKFSCLKHIQLFAHILSHGSDKILYLAYVMRAAPFVEKVEVHFASGHSLWFAQEGPLRHELGHDEYKYLKNLCVTGFKGARGQLEFLLHVVENATALDVITVDTTERMLESDIKNDYLCSIARQTIELHIREALPPKAKLFVL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0446700 | OsNip_04t0446700-01 | Chr04 | 22267085 | 22272315 | - | RAP2018-11-26 | ||
| CDS seq | ATGATATTTGTTTTTTTTTTAATCTTTCAGAATCTATGGTCGTTAGATAACTCACTGAAGTTTTCCTGTCTCAAACACATACAATTGTTTGCGCACATATTATCTCATGGTTCCGACAAAATTCTGTACTTAGCTTATGTCATGAGGGCTGCACCCTTCGTTGAAAAGGTGGAAGTGCATTTTGCTAGCGGTCATAGCCTATGGTTTGCACAAGAAGGCCCCCTTAGACATGAACTTGGGCACGATGAATACAAATATCTGAAGAACCTTTGTGTTACAGGATTCAAAGGGGCTAGAGGACAACTTGAGTTTCTTTTACATGTTGTGGAAAATGCAACTGCACTAGACGTTATAACTGTGGATACAACTGAAAGAATGTTGGAAAGTGACATTAAGAACGACTATCTCTGCAGTATTGCTCGTCAGACTATCGAACTTCATATCCGCGAGGCACTCCCACCGAAGGCGAAGCTCTTTGTTCTTTAG
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| Protein seq | MIFVFFLIFQNLWSLDNSLKFSCLKHIQLFAHILSHGSDKILYLAYVMRAAPFVEKVEVHFASGHSLWFAQEGPLRHELGHDEYKYLKNLCVTGFKGARGQLEFLLHVVENATALDVITVDTTERMLESDIKNDYLCSIARQTIELHIREALPPKAKLFVL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.994492 | 1.221954 | 1.929982 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g36910 | RBH | 1.172019 | 0.983739 | 0.689077 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0446700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014870 | RBH | 0.609129 | 7.011590 | 6.135340 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015730 | RBH | 0.477385 | 1.513132 | 3.362265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015450 | RBH | 2.460533 | 5.838421 | 9.823792 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015030 | RBH | 0.216423 | 0.166217 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015360 | RBH | 6.567060 | 11.363042 | 18.090363 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0347300 | RBH | 3.993878 | 13.556446 | 14.916678 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014200 | RBH | 0.234257 | 0.507309 | 1.395892 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0344000 | RBH | 3.772502 | 13.5323565 | 16.418349 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014840 | RBH | 0.163588 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014540 | RBH | 0.522377 | 10.264428 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014550 | RBH | 6.523315 | 10.833470 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015190 | RBH | 1.263921 | 1.084527 | 1.273139 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015360 | RBH | 0.415460 | 9.841547 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014440 | RBH | 0.478296 | 3.891833 | 3.250525 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014510 | RBH | 0.888532 | 20.312202 | 5.966796 |
