Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0423200 | OGI:04065040 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:20927838-20928900 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAATCCATGAGCATTGAGGAGGAGTACATCAGCACGCTGCACACGCGATCCAACGCGCGGTTCTTCTCGAGGAGCAAGCAGCAGCTGTCCGGGGTGGAGATGGAGGCGGCGGCGGCGGCGGAGCAGCAGGACGCCGTCGTCGTCCCCGCGGAGTTGCAGCGGATGATGCACCGGAGGACGTCGTCGGAGATCGAGCTAGCGATGGCGGGCTACTTCGACGCCAGCGACGAGGCGTCGGAGATCTGCAGGCAGCTGCTGGCGAACATCAAGAACGCGCAGAGCAACTACCTGTCCATGGACAGCTTCCTCGCCACCATCGTCTCCGACAGCGTCGCCGCCGCGGCGACGACGGCGCCGCTCGCAGCCGTGCGGAGCAACCCGTTCAGCGACGCGGCGACGCGGAGCAGCTTCCGGCGGATCCACGACAGGTACTCGTCCATCCTCCGCGCCATCAAGCGCAGCCACGGGAAGGTGGCGAGGAAGCTTGAAGGTGGCGAGGGCCGTCCGGAAGGCCTCCCGGGCGTGCCTCGTCGTGGCGTGCGGCGCCGCGGCGGCGCCTCCGTCGCCGTGGCCGCGCACCTCCTGCTCTTCGGCCTCCTCGTCGGCCCCGCCGCCATGGCGCTCTGCCCCATGGCGCTGAAGCGGAAGGTGACGAACACGAACGCGGCGGCGGTAGCAAGGCCGGCGAGGCGGTGGTCCACGACGGGGTCGCTGCTGCGGCTGCAGGAGCAGCTCGACACGGCGGCCAAGGGGACGTACGTGCTGGGGCGCGACCTCGACACGGTGAGCCACCTGGTGGCGCGGCTCTCCGACGGCATCGAGCGGGAGAACGCCATGGCGAGGCGGTGCGCGGAGAGGGTGGCCGCCGACAACGTCGGCGCCGCCGCCGCCGCCGGCGGGAGGTTCTTCCCGGTGCAGGAGATGGCGAACGAGCTGAGGAGAAGCTGCTCGAGCTCGAGGAAGCTCGCGGAGGAGCTGGAGGAGCACGTGTGCCTATGCCTCGCCACCATCCATAGGGCTCGACTTCTCGTCATCAAAGAGATCTCCAAGCAAGCATGAA
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| CDS seq | ATGGAATCCATGAGCATTGAGGAGGAGTACATCAGCACGCTGCACACGCGATCCAACGCGCGGTTCTTCTCGAGGAGCAAGCAGCAGCTGTCCGGGGTGGAGATGGAGGCGGCGGCGGCGGCGGAGCAGCAGGACGCCGTCGTCGTCCCCGCGGAGTTGCAGCGGATGATGCACCGGAGGACGTCGTCGGAGATCGAGCTAGCGATGGCGGGCTACTTCGACGCCAGCGACGAGGCGTCGGAGATCTGCAGGCAGCTGCTGGCGAACATCAAGAACGCGCAGAGCAACTACCTGTCCATGGACAGCTTCCTCGCCACCATCGTCTCCGACAGCGTCGCCGCCGCGGCGACGACGGCGCCGCTCGCAGCCGTGCGGAGCAACCCGTTCAGCGACGCGGCGACGCGGAGCAGCTTCCGGCGGATCCACGACAGGTACTCGTCCATCCTCCGCGCCATCAAGCGCAGCCACGGGAAGGTGGCGAGGAAGCTTGAAGGTGGCGAGGGCCGTCCGGAAGGCCTCCCGGGCGTGCCTCGTCGTGGCGTGCGGCGCCGCGGCGGCGCCTCCGTCGCCGTGGCCGCGCACCTCCTGCTCTTCGGCCTCCTCGTCGGCCCCGCCGCCATGGCGCTCTGCCCCATGGCGCTGAAGCGGAAGGTGACGAACACGAACGCGGCGGCGGTAGCAAGGCCGGCGAGGCGGTGGTCCACGACGGGGTCGCTGCTGCGGCTGCAGGAGCAGCTCGACACGGCGGCCAAGGGGACGTACGTGCTGGGGCGCGACCTCGACACGGTGAGCCACCTGGTGGCGCGGCTCTCCGACGGCATCGAGCGGGAGAACGCCATGGCGAGGCGGTGCGCGGAGAGGGTGGCCGCCGACAACGTCGGCGCCGCCGCCGCCGCCGGCGGGAGGTTCTTCCCGGTGCAGGAGATGGCGAACGAGCTGAGGAGAAGCTGCTCGAGCTCGAGGAAGCTCGCGGAGGAGCTGGAGGAGCACGTGTGCCTATGCCTCGCCACCATCCATAGGGCTCGACTTCTCGTCATCAAAGAGATCTCCAAGCAAGCATGA
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| Protein seq | MESMSIEEEYISTLHTRSNARFFSRSKQQLSGVEMEAAAAAEQQDAVVVPAELQRMMHRRTSSEIELAMAGYFDASDEASEICRQLLANIKNAQSNYLSMDSFLATIVSDSVAAAATTAPLAAVRSNPFSDAATRSSFRRIHDRYSSILRAIKRSHGKVARKLEGGEGRPEGLPGVPRRGVRRRGGASVAVAAHLLLFGLLVGPAAMALCPMALKRKVTNTNAAAVARPARRWSTTGSLLRLQEQLDTAAKGTYVLGRDLDTVSHLVARLSDGIERENAMARRCAERVAADNVGAAAAAGGRFFPVQEMANELRRSCSSSRKLAEELEEHVCLCLATIHRARLLVIKEISKQA |
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| Function | UPF0496 protein 3 [UniProtKB/Swiss-Prot:A2XCJ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0423200 | OsNip_04t0423200-00 | Chr04 | 20927838 | 20928900 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAATCCATGAGCATTGAGGAGGAGTACATCAGCACGCTGCACACGCGATCCAACGCGCGGTTCTTCTCGAGGAGCAAGCAGCAGCTGTCCGGGGTGGAGATGGAGGCGGCGGCGGCGGCGGAGCAGCAGGACGCCGTCGTCGTCCCCGCGGAGTTGCAGCGGATGATGCACCGGAGGACGTCGTCGGAGATCGAGCTAGCGATGGCGGGCTACTTCGACGCCAGCGACGAGGCGTCGGAGATCTGCAGGCAGCTGCTGGCGAACATCAAGAACGCGCAGAGCAACTACCTGTCCATGGACAGCTTCCTCGCCACCATCGTCTCCGACAGCGTCGCCGCCGCGGCGACGACGGCGCCGCTCGCAGCCGTGCGGAGCAACCCGTTCAGCGACGCGGCGACGCGGAGCAGCTTCCGGCGGATCCACGACAGGTACTCGTCCATCCTCCGCGCCATCAAGCGCAGCCACGGGAAGGTGGCGAGGAAGCTTGAAGGTGGCGAGGGCCGTCCGGAAGGCCTCCCGGGCGTGCCTCGTCGTGGCGTGCGGCGCCGCGGCGGCGCCTCCGTCGCCGTGGCCGCGCACCTCCTGCTCTTCGGCCTCCTCGTCGGCCCCGCCGCCATGGCGCTCTGCCCCATGGCGCTGAAGCGGAAGGTGACGAACACGAACGCGGCGGCGGTAGCAAGGCCGGCGAGGCGGTGGTCCACGACGGGGTCGCTGCTGCGGCTGCAGGAGCAGCTCGACACGGCGGCCAAGGGGACGTACGTGCTGGGGCGCGACCTCGACACGGTGAGCCACCTGGTGGCGCGGCTCTCCGACGGCATCGAGCGGGAGAACGCCATGGCGAGGCGGTGCGCGGAGAGGGTGGCCGCCGACAACGTCGGCGCCGCCGCCGCCGCCGGCGGGAGGTTCTTCCCGGTGCAGGAGATGGCGAACGAGCTGAGGAGAAGCTGCTCGAGCTCGAGGAAGCTCGCGGAGGAGCTGGAGGAGCACGTGTGCCTATGCCTCGCCACCATCCATAGGGCTCGACTTCTCGTCATCAAAGAGATCTCCAAGCAAGCATGA
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| Protein seq | MESMSIEEEYISTLHTRSNARFFSRSKQQLSGVEMEAAAAAEQQDAVVVPAELQRMMHRRTSSEIELAMAGYFDASDEASEICRQLLANIKNAQSNYLSMDSFLATIVSDSVAAAATTAPLAAVRSNPFSDAATRSSFRRIHDRYSSILRAIKRSHGKVARKLEGGEGRPEGLPGVPRRGVRRRGGASVAVAAHLLLFGLLVGPAAMALCPMALKRKVTNTNAAAVARPARRWSTTGSLLRLQEQLDTAAKGTYVLGRDLDTVSHLVARLSDGIERENAMARRCAERVAADNVGAAAAAGGRFFPVQEMANELRRSCSSSRKLAEELEEHVCLCLATIHRARLLVIKEISKQA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34590 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0423200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013290 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013810 | RBH | 10.927655 | 4.162868 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0331200 | RBH | 8.284243 | 1.181538 | 0.057518 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012710 | SBH | 0.255657 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0328500 | SBH | 1.633857 | 0.1345915 | 0.0662005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013310 | RBH | 0.077428 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012970 | RBH | 0.0 | 2.810385 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012980 | RBH | 1.500468 | 8.043619 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013720 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012830 | RBH | 0.000000 | 0.0 | 0.565037 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012800 | RBH | 1.009018 | 0.000000 | 0.000000 |
