Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0392300 | OGI:04061270 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:19300027-19301775 | ||||||||
| Gene Symbol | OsSTA122 | ||||||||||
| DNA seq | ATGGCGGTGGGAACGCGTCTCGCCGTGCAGCAGCAGCAGCCGACGAAGACGCAGCAGCAGAGGCAGCGGGGAATCGGATGCGGCGGCGCTGATGCAGCGGGGGTGGCGCCTCCTCCTTCGCCGCGGGGGATGCCGATGGCGCCGGGGCCGCGTCTCGCCATCGACCAGCAGCCGTCGACGATCCTCGCACCTTCTCCGACGACCACACTGCAGAAGCAGCAGGGGATCGGGTTCGGCGGCGCTGCAGCAGCGGTGGCGCCTCCTCCTTCGCCGCGGGGGATGCCGATGGCGCCGGGGCCGCGTCTCGCCATCCAGCCGCCGTCGACGATCCTCGCGCCTCCGACGACCACACTGCAGAAGCAGCAGGGGATCGGGTTCGGTGGCGCTGCAGCGGGTGTGGCGCCTCCTCCTTCGCCGCCGGGGATGTCGATGGTGGCGGGCCCGCGTCCCGCCAGGCAGCACAAGCGGAAGCAGCCGAACGTCGCGCCGCTGCAGCAGAAGATTCAGGGCTTCGGCGGGGCCGGGGCTGGAGCTGGACCGGCCCCGGTGTCTTCCTCGGCGCGCGCGATGGCGGAGAAGGCCGCAGCTGCAGACCCGGAGGAGGAGGCGCGAGCGAGGGAGCGCGCGGCAGCGGAGCAGATCGCGTACGAGGACGCGCGGAAGGCATGCAACCCGGACTTCACGACGCAGTTCGCCTCCGTCGAGGACGCCATCAGCAGGTACGCGTGCTTCCCCTGCTCCGATCAATCTCCTCTTCCTCCTCCATCTCCCGTCTCTCCGCCGCGCGCCGCCTCGTTGCTTTTCTCCTGTTTTTTTTTTTTTTGGATTAGTTCCTCGCTGCGGTGAACAACACCCAAATTGATCGCTGTCGAGTTGCGTTTGCAAGATTTCGTCCGTGTTTTAGGGGGATTCGCGATTGTTTAAGGTTTTCGGTGCGGCGAATCTGAATTTCTGATCATTCCTGTACTGCACACGATTCGTTAGATATTACATTCTCCGAAGAAGCGTTTCTTCGGAGGAATTGGATCGACGACAGCCAAACTTCTAGTGCTTGCAAATCAATCCACGAACAATTTTAACGCAAAAAACATTGAGGAGTTTCAGAATTGTTCGCTGGGTTTGTTCATTAATCTCCCGGTGATGGATGAACGGGGAAAAGGGCACGATCGGCAACTTTGATTTTTCCGTTTCATCGTGTGTTCTGACGAAATGCTTTGGAACCTAATGTTTGGCTAACTTCATTGAGAACAATGCATTTTGCATTAACAGGGACATTGATCCTTGATTAATAATGCTGATTAGGTGTTTTGGTTATGATCAATTTCAGATAGTATAATTTCTGTCACCGCACATTAGAACATACTGTATGTGATTTGAAACCAATGTTAAGTTTCAGCATATAAACTTCTGCTGTCTCTGTTAGGATTATGACGTTGCTAATTATGCGCCGTTGCTTTCATCCAGCTAACTACACTGAAAAAAAAAACCATATACAGTGACTATGCTGTTCATGGACTGATTTGATTTGCCCGCAGGCTGCTTCGGAACGAGGAGGACGTGGTCTACGTGGAGAAGCTGGTGCTGGCCTTCAACGTCGCCGTCCGGAAGTCCGGCGCCGGCGCCGCCCGCGCCGAGGAGCGGCTCATGGTGGAGAACCTCCTGCTCGCCGACGAGCAGCGGCAGTCGGAGCACGTCAGCGCCCTCGTCCGGCAGCAGCAGCTGGTGGCGCTGCACCTCATGCTAGCGTAA
More
|
||||||||||
| CDS seq | ATGGCGGTGGGAACGCGTCTCGCCGTGCAGCAGCAGCAGCCGACGAAGACGCAGCAGCAGAGGCAGCGGGGAATCGGATGCGGCGGCGCTGATGCAGCGGGGGTGGCGCCTCCTCCTTCGCCGCGGGGGATGCCGATGGCGCCGGGGCCGCGTCTCGCCATCGACCAGCAGCCGTCGACGATCCTCGCACCTTCTCCGACGACCACACTGCAGAAGCAGCAGGGGATCGGGTTCGGCGGCGCTGCAGCAGCGGTGGCGCCTCCTCCTTCGCCGCGGGGGATGCCGATGGCGCCGGGGCCGCGTCTCGCCATCCAGCCGCCGTCGACGATCCTCGCGCCTCCGACGACCACACTGCAGAAGCAGCAGGGGATCGGGTTCGGTGGCGCTGCAGCGGGTGTGGCGCCTCCTCCTTCGCCGCCGGGGATGTCGATGGTGGCGGGCCCGCGTCCCGCCAGGCAGCACAAGCGGAAGCAGCCGAACGTCGCGCCGCTGCAGCAGAAGATTCAGGGCTTCGGCGGGGCCGGGGCTGGAGCTGGACCGGCCCCGGTGTCTTCCTCGGCGCGCGCGATGGCGGAGAAGGCCGCAGCTGCAGACCCGGAGGAGGAGGCGCGAGCGAGGGAGCGCGCGGCAGCGGAGCAGATCGCGTACGAGGACGCGCGGAAGGCATGCAACCCGGACTTCACGACGCAGTTCGCCTCCGTCGAGGACGCCATCAGCAGGCTGCTTCGGAACGAGGAGGACGTGGTCTACGTGGAGAAGCTGGTGCTGGCCTTCAACGTCGCCGTCCGGAAGTCCGGCGCCGGCGCCGCCCGCGCCGAGGAGCGGCTCATGGTGGAGAACCTCCTGCTCGCCGACGAGCAGCGGCAGTCGGAGCACGTCAGCGCCCTCGTCCGGCAGCAGCAGCTGGTGGCGCTGCACCTCATGCTAGCGTAA
More
|
||||||||||
| Protein seq | MAVGTRLAVQQQQPTKTQQQRQRGIGCGGADAAGVAPPPSPRGMPMAPGPRLAIDQQPSTILAPSPTTTLQKQQGIGFGGAAAAVAPPPSPRGMPMAPGPRLAIQPPSTILAPPTTTLQKQQGIGFGGAAAGVAPPPSPPGMSMVAGPRPARQHKRKQPNVAPLQQKIQGFGGAGAGAGPAPVSSSARAMAEKAAAADPEEEARARERAAAEQIAYEDARKACNPDFTTQFASVEDAISRLLRNEEDVVYVEKLVLAFNVAVRKSGAGAARAEERLMVENLLLADEQRQSEHVSALVRQQQLVALHLMLA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0392300 | OsNip_04t0392300-00 | Chr04 | 19300027 | 19301775 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGGTGGGAACGCGTCTCGCCGTGCAGCAGCAGCAGCCGACGAAGACGCAGCAGCAGAGGCAGCGGGGAATCGGATGCGGCGGCGCTGATGCAGCGGGGGTGGCGCCTCCTCCTTCGCCGCGGGGGATGCCGATGGCGCCGGGGCCGCGTCTCGCCATCGACCAGCAGCCGTCGACGATCCTCGCACCTTCTCCGACGACCACACTGCAGAAGCAGCAGGGGATCGGGTTCGGCGGCGCTGCAGCAGCGGTGGCGCCTCCTCCTTCGCCGCGGGGGATGCCGATGGCGCCGGGGCCGCGTCTCGCCATCCAGCCGCCGTCGACGATCCTCGCGCCTCCGACGACCACACTGCAGAAGCAGCAGGGGATCGGGTTCGGTGGCGCTGCAGCGGGTGTGGCGCCTCCTCCTTCGCCGCCGGGGATGTCGATGGTGGCGGGCCCGCGTCCCGCCAGGCAGCACAAGCGGAAGCAGCCGAACGTCGCGCCGCTGCAGCAGAAGATTCAGGGCTTCGGCGGGGCCGGGGCTGGAGCTGGACCGGCCCCGGTGTCTTCCTCGGCGCGCGCGATGGCGGAGAAGGCCGCAGCTGCAGACCCGGAGGAGGAGGCGCGAGCGAGGGAGCGCGCGGCAGCGGAGCAGATCGCGTACGAGGACGCGCGGAAGGCATGCAACCCGGACTTCACGACGCAGTTCGCCTCCGTCGAGGACGCCATCAGCAGGCTGCTTCGGAACGAGGAGGACGTGGTCTACGTGGAGAAGCTGGTGCTGGCCTTCAACGTCGCCGTCCGGAAGTCCGGCGCCGGCGCCGCCCGCGCCGAGGAGCGGCTCATGGTGGAGAACCTCCTGCTCGCCGACGAGCAGCGGCAGTCGGAGCACGTCAGCGCCCTCGTCCGGCAGCAGCAGCTGGTGGCGCTGCACCTCATGCTAGCGTAA
More
|
|||||||
| Protein seq | MAVGTRLAVQQQQPTKTQQQRQRGIGCGGADAAGVAPPPSPRGMPMAPGPRLAIDQQPSTILAPSPTTTLQKQQGIGFGGAAAAVAPPPSPRGMPMAPGPRLAIQPPSTILAPPTTTLQKQQGIGFGGAAAGVAPPPSPPGMSMVAGPRPARQHKRKQPNVAPLQQKIQGFGGAGAGAGPAPVSSSARAMAEKAAAADPEEEARARERAAAEQIAYEDARKACNPDFTTQFASVEDAISRLLRNEEDVVYVEKLVLAFNVAVRKSGAGAARAEERLMVENLLLADEQRQSEHVSALVRQQQLVALHLMLA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.480159 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0392500 | RBH | 0.0 | 0.0 | 0.489618 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32190 | RBH | 0.0 | 0.0 | 0.123525 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0392300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011490 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012280 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011970 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011640 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011900 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0307100 | SBH | 0 | 0.0672255 | 0.081987 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010810 | SBH | 0.0 | 0.0 | 0.075072 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0303800 | RBH | 0.0827015 | 0.035689 | 0.030709 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011460 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011060 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011080 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011580 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011820 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010990 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011050 | SBH | 0.0 | 0.0 | 0.0 |
