Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0381700 | OGI:04059470 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:18720467-18722735 | ||||||||
| Gene Symbol | FIT, OsbHLH156, OsFIT/OsbHLH156, OsFIT, bHLH156, OsIROP1, IROP1 | ||||||||||
| DNA seq | AGCTTAATTAGCTCTCTCTTAAGCCTAAAGCGAGACAATTAATTTAATAAGCACCCCCCACCACCAGCCATGGAGCACCACCACCTCCTGCTGCAACTCTCGCCGCCACCGCCGCCGCCGCCGCTGCCGGCGGCGCACCTCATGATGAGCCCGAGCTTCTTCGACGCCGGCGTGTTCGCCGATGTCGGCGGCGACTGGATGGAGGACCTCATGCATCTCGGCGAGCTGTTCGGCGTCGGCGTCGGCGGCGACGATGATGATAATGGCGGTGTCGACGGCGGCGTGGGCGGCGGTGATGATCGGATGCAAGAGTGGCAGAATAATTGCGAGGGCGCCGGCTCGCCGGACCACCAGCCTAGCTGCGGTGATGGGGATGGCGATGGCGATGGCGACGTGAGCCCTCGTGATGGGGAGCTCGGCGACGGCGACGGCGACAACTCGGCGACGAGGAAGAGGCGGGACCGGTCGAAGACGATCGTGTCGGAGCGGAAGCGGAGGGTCCGGATGAAGGAGAAGCTCTACGAGCTCCGAGCTCTCGTCCCCAACATCACTAAGGTACGTACTCAGTGCTTGATTGCTCGCGTCGGCGTCGCCATGGCGGCGCCGCCATGCGCCATTGCCAACACAAGCTTAATGATTGCTTGGCAGATGGACAAGGCGTCGATCATCGCCGACGCGGTGGTGTACGTCAAGGACCTGCAGGCGCACGCCAGGAAGCTCAAGGAGGAGGTCGCCGCGCTCGAGGAGGCGCGCCCGATCAGGCCGCCTCCGCCGTCCGCCGCCGCGCAACGGCCGCAGAGACAGCCACGCCGCGTGGCGGCGGCGGCTGCCCAGCTGGCGAGGGCCGCGGACGCCGCCGCCGTGACGACAGCGGCGGCGGCGCCGCACGGCGCGAGGGTGGCGCACGTCGGCGCGGCGCAGGTCGGGGAGGGGCGGTTCTTCGTGACGGTGGAGTGCGAGCCGGCGGCGGCCGCGGCGAGAGGAGGAGGAGGAGGCGTGGCGGCGCCGGTCTGCGCCGCCGTGGAGTCGCTGTCGTGCTTCACCGTGGAGAGCTCCACCGTCGGGTGCTCGCCGGACCGCGTCGTGGCAACTCTCACCCTCAAGGTGCGTCACACCCAATGCACCTAACTGTGTAATTATACTCTTGATCACATCTGCCACGTCACTTAACTACAATTAACTAATGATGAGTTACAAGCGATTTTACGGTCCTCAGAGTAGGCATTGAAGGTGCCTTATTATCTAACATAAAAGGTATCTCTTGGTATCTTCAACGTGAGAAGAAAAAAAAAAGAAGTTACACTAAAAATTACGGTCTTTTAATACTACTCGGTAACTGTAAAATTGCTCTTAAGTTAATTGGGTATTTTATTTTGGAAGGGGAAATATTAGCACCATTTACCTGAAAATTATTTTTCGTAAGAAAAAAGAAGTTTAGTTTTGGATTAGAGATTTAGTGGTAATGCAATTCATGCCTATATATACTATCTCCGTTTTTCTTTTATGAACCTAGAAGTTTCCTAGGTCCGATTTTCAATATTTTTACTTGTTTGATGTGGTTTTTCACTGGATATTTCTCTATTATGTACTCCCCCTCTTAAAAAAAAAAGACAAACCCTCAGTTTCCGTGTTCAATTTTAACTGTCCGTCTTATATGAAATTTTTTTATAATTCGTATTTTCATTGTTGTTAGATAATAAAATATGATTAATATTTTATTCGTGACTTGTCTTTTTATTTTTTTTTCATAATTTTTTTAAATAAGACGAACGGTTAAACGTTGGGCACGGAAATCAGAGTTTGTCTTTTTTTTTACGGAGGGAGTAACTATTATTCCATTGGGATATGTGGATTAACCGCTAATTACCTTGTGGTGTGTGTAGGTTAGTGAAGCAGAGGAGGATGTGTCGGCGATCAGCGAGTGCACGGTGAAGCTCTGGGTGATGGCGGCTCTTCTCAAGGAGGGGTTCCGGCCGCAACCGACGGTCCAGATCTCCTGATCCACCCAACACCGGCCGATATCAACCCTTGGATTTCATCGCCCCATCCCTATGTATACAACTACTGCTCTTTCATGTGTAACATCCTAACAAATGGTGTGAAGAGTATATTGGGAGGTTAATTGAGTGGTTAATCTTGGCCATCCACGGCCGATCGAACGGCTAGCGTACCACCTAATGCTTCTTCTTCTTTTTAATAAAGAGTGGTGCATGATGTATACATATACCGTATTTCGGATAATTAGATCAGGAATGAATACTTGTTGTAT
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| CDS seq | ATGGAGCACCACCACCTCCTGCTGCAACTCTCGCCGCCACCGCCGCCGCCGCCGCTGCCGGCGGCGCACCTCATGATGAGCCCGAGCTTCTTCGACGCCGGCGTGTTCGCCGATGTCGGCGGCGACTGGATGGAGGACCTCATGCATCTCGGCGAGCTGTTCGGCGTCGGCGTCGGCGGCGACGATGATGATAATGGCGGTGTCGACGGCGGCGTGGGCGGCGGTGATGATCGGATGCAAGAGTGGCAGAATAATTGCGAGGGCGCCGGCTCGCCGGACCACCAGCCTAGCTGCGGTGATGGGGATGGCGATGGCGATGGCGACGTGAGCCCTCGTGATGGGGAGCTCGGCGACGGCGACGGCGACAACTCGGCGACGAGGAAGAGGCGGGACCGGTCGAAGACGATCGTGTCGGAGCGGAAGCGGAGGGTCCGGATGAAGGAGAAGCTCTACGAGCTCCGAGCTCTCGTCCCCAACATCACTAAGATGGACAAGGCGTCGATCATCGCCGACGCGGTGGTGTACGTCAAGGACCTGCAGGCGCACGCCAGGAAGCTCAAGGAGGAGGTCGCCGCGCTCGAGGAGGCGCGCCCGATCAGGCCGCCTCCGCCGTCCGCCGCCGCGCAACGGCCGCAGAGACAGCCACGCCGCGTGGCGGCGGCGGCTGCCCAGCTGGCGAGGGCCGCGGACGCCGCCGCCGTGACGACAGCGGCGGCGGCGCCGCACGGCGCGAGGGTGGCGCACGTCGGCGCGGCGCAGGTCGGGGAGGGGCGGTTCTTCGTGACGGTGGAGTGCGAGCCGGCGGCGGCCGCGGCGAGAGGAGGAGGAGGAGGCGTGGCGGCGCCGGTCTGCGCCGCCGTGGAGTCGCTGTCGTGCTTCACCGTGGAGAGCTCCACCGTCGGGTGCTCGCCGGACCGCGTCGTGGCAACTCTCACCCTCAAGGTTAGTGAAGCAGAGGAGGATGTGTCGGCGATCAGCGAGTGCACGGTGAAGCTCTGGGTGATGGCGGCTCTTCTCAAGGAGGGGTTCCGGCCGCAACCGACGGTCCAGATCTCCTGA
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| Protein seq | MEHHHLLLQLSPPPPPPPLPAAHLMMSPSFFDAGVFADVGGDWMEDLMHLGELFGVGVGGDDDDNGGVDGGVGGGDDRMQEWQNNCEGAGSPDHQPSCGDGDGDGDGDVSPRDGELGDGDGDNSATRKRRDRSKTIVSERKRRVRMKEKLYELRALVPNITKMDKASIIADAVVYVKDLQAHARKLKEEVAALEEARPIRPPPPSAAAQRPQRQPRRVAAAAAQLARAADAAAVTTAAAAPHGARVAHVGAAQVGEGRFFVTVECEPAAAAARGGGGGVAAPVCAAVESLSCFTVESSTVGCSPDRVVATLTLKVSEAEEDVSAISECTVKLWVMAALLKEGFRPQPTVQIS |
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| Function | Transcription factor BHLH156 [UniProtKB/Swiss-Prot:A0A0N7KIY3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0381700 | OsNip_04t0381700-00 | Chr04 | 18720467 | 18722735 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCACCACCACCTCCTGCTGCAACTCTCGCCGCCACCGCCGCCGCCGCCGCTGCCGGCGGCGCACCTCATGATGAGCCCGAGCTTCTTCGACGCCGGCGTGTTCGCCGATGTCGGCGGCGACTGGATGGAGGACCTCATGCATCTCGGCGAGCTGTTCGGCGTCGGCGTCGGCGGCGACGATGATGATAATGGCGGTGTCGACGGCGGCGTGGGCGGCGGTGATGATCGGATGCAAGAGTGGCAGAATAATTGCGAGGGCGCCGGCTCGCCGGACCACCAGCCTAGCTGCGGTGATGGGGATGGCGATGGCGATGGCGACGTGAGCCCTCGTGATGGGGAGCTCGGCGACGGCGACGGCGACAACTCGGCGACGAGGAAGAGGCGGGACCGGTCGAAGACGATCGTGTCGGAGCGGAAGCGGAGGGTCCGGATGAAGGAGAAGCTCTACGAGCTCCGAGCTCTCGTCCCCAACATCACTAAGATGGACAAGGCGTCGATCATCGCCGACGCGGTGGTGTACGTCAAGGACCTGCAGGCGCACGCCAGGAAGCTCAAGGAGGAGGTCGCCGCGCTCGAGGAGGCGCGCCCGATCAGGCCGCCTCCGCCGTCCGCCGCCGCGCAACGGCCGCAGAGACAGCCACGCCGCGTGGCGGCGGCGGCTGCCCAGCTGGCGAGGGCCGCGGACGCCGCCGCCGTGACGACAGCGGCGGCGGCGCCGCACGGCGCGAGGGTGGCGCACGTCGGCGCGGCGCAGGTCGGGGAGGGGCGGTTCTTCGTGACGGTGGAGTGCGAGCCGGCGGCGGCCGCGGCGAGAGGAGGAGGAGGAGGCGTGGCGGCGCCGGTCTGCGCCGCCGTGGAGTCGCTGTCGTGCTTCACCGTGGAGAGCTCCACCGTCGGGTGCTCGCCGGACCGCGTCGTGGCAACTCTCACCCTCAAGGTTAGTGAAGCAGAGGAGGATGTGTCGGCGATCAGCGAGTGCACGGTGAAGCTCTGGGTGATGGCGGCTCTTCTCAAGGAGGGGTTCCGGCCGCAACCGACGGTCCAGATCTCCTGA
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| Protein seq | MEHHHLLLQLSPPPPPPPLPAAHLMMSPSFFDAGVFADVGGDWMEDLMHLGELFGVGVGGDDDDNGGVDGGVGGGDDRMQEWQNNCEGAGSPDHQPSCGDGDGDGDGDVSPRDGELGDGDGDNSATRKRRDRSKTIVSERKRRVRMKEKLYELRALVPNITKMDKASIIADAVVYVKDLQAHARKLKEEVAALEEARPIRPPPPSAAAQRPQRQPRRVAAAAAQLARAADAAAVTTAAAAPHGARVAHVGAAQVGEGRFFVTVECEPAAAAARGGGGGVAAPVCAAVESLSCFTVESSTVGCSPDRVVATLTLKVSEAEEDVSAISECTVKLWVMAALLKEGFRPQPTVQIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g31290 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0381700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010810 | RBH | 0.0 | 11.306002 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011580 | RBH | 0.000000 | 33.033371 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011290 | RBH | 0.0 | 18.028263 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010960 | RBH | 0.0 | 0.211198 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011200 | RBH | 0.0 | 161.075699 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0298100 | RBH | 0.241954 | 13.074258 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010200 | RBH | 0.0 | 2.197424 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0294900 | RBH | 0.8532615 | 4.0973755 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010810 | RBH | 0.0 | 1.714928 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010390 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010440 | RBH | 0.0 | 264.789276 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010930 | RBH | 0.0 | 2.570145 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011080 | RBH | 0.0 | 9.113390 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010290 | RBH | 0.0 | 1.717043 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010360 | RBH | 0.0 | 14.330633 | 0.0 |
