Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0379400 | OGI:04057110 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:18535166-18538598 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAGCAGGTGAGGTAATTTTTCTTCTTATCTGAGTAAATACACTCATTGTCTAGAAAAAAACCAAGTCAATACACAAATTTCAGGGTGGCTTTAGCTGGCATTTGTAGAATTGATACATACAAACATCTTTCTGAAGTAGCTGCAAGCCATCAGCAGCTTTTATCTTCTTCCTTCGCAGCATCTGCCGTTTGCCATTTCATGTCAGGTGTAACTGCCATTATCAAGAAGATTCCACTTAATAGATAGATGGTATATTTTACCACAATCAGTTACTAGTACATTAGTGTATATATGCATACAGGTACCTCTATGAACTTTTTGAGCTTTCCTGGGATGCTTTGAAGATGCGAAATGCAGCTATGCACATTGTAATGTTACCAATCACTGTTAGAGCACCTTGGAGCGCTACAAGCACCTGCAGATAGTTTTCAAACAAAAAAAAAAGAACCATGAAGAGAAATAACGTGAGCAGAAGAATTATGAAAAACACTAGTTGAATTATATTATTGTATGTTTTTACAATAAGAGAGTATCTTGATAATACTACAAAAAAATCGCAAGCATACGACTTGCACAAAAGAAGTGGAGAACGGTTCCACTGTCTAATCATCTGTGTTTCATGTGCATTTATTTAAAGGCAAATAGGCACTAGACCAATTGAAATGTTAGGATATTTGACAAGTGTGAACAGTTACAAACCACGGGGAAGCAAATGATGATAATTTTGATGAACGGAAAAAAAGGAAGCACTAGTGTTCCAACTCAAGGGATATATCTTACTTCAAGAGACTCCGAATTATAGAAGAAATGCCACGTGCAAGCGCACATCGCTCCACCAAGAAGTGGAACCTATTATACAAAGAAAAGAAAATGCAAATCTGGATAGTCAACAATCATAAAGCAAGCTGTTAAAAATTCAATCGAAAACTTGTGAACAACTGCAACTACCATCAGCAAAGACTTTACTACCTCCGTCCCAATACAAGTGCAGTTGTGGGTTTCGTTTGACCGTCCATCTTATTTGAAAAAAATATATGATTAGTATTTTTATTGTTATTAGATGATAAAACATGAATAGAAGTCGTACTATATATCGGGACGGAGGTCGTACTATATAGGAGCAGTATAGATAATAGAAGTCACACATAAGTAAAGAGGGGTACTTGCAGATTAGATTCACTGAAAACAACACAAGATTTCTTCTGATGAAAACATACTCATAAATATGAGACATTCTCCTCCCAATCTCTGAATCTTACTACTACTCCCTCCGTTTCATAATGTAAGACTTTCTAGCATTGCCCATATTCATATGGATGTTAATTAATCTAGGCATATATGTGTGTTTAAATTCATTAACATTTATATGAATGTGGGCAATGCTAAAAAATCTTACATTATGAAACGGAGGAAGTAATACATAGGAGTACATGAAGCTACTATGTTGTACTCCCTCCGTCCCCTAATATAAGGGATTTTGATATTTTACTTATACTGTTTGACCATTCGTCTTATTCAAAAAAATTTGGAATTATTATTTATTTTATTTGTGACTTACTTTATTATCCAAAGTACCTTAAGCGCAACTTTTCGTTTTTTATATTTGCACAAATTTTTTGAATAAGACGAGTGGTCAAACAGTGCAAGCAAAATATCAAAATCCCTTTTATTGGGGGGACGGAGGGAGTACGGAAATTAACATTATCCAACACAAATTTCATCAGCAAATAAATCATCATTTTATCCAAATTTACACTCACCATTCCCCAAGAGAGGCCTTTCCAACCCTTGAGCCCCGTCCTCTCACCGTAGTCCCAAACCAGCGCCATAGCCGTCACCCTGCAATCCGGACAGAACAGGCGATAATCCCCTCATCTTTTGCAGCCGTGGAAGCAAGAGCTAGGCAGGTAGGTATTGTAGATCGTACCACTCGGCGACGCTGGAGACGTGGACGGCCCAAGTGGGCAGCGAGAGCGCGTTGGCCGGCTCGGCGGCCAGCGCGGCGATCGCTGGCGGCGAGGCAGCGGCTACGGCTGCCACAGTGACAAAGGCTATGCCGTTGCTCGCCAGGCGCGCCGCGGACGGCGGCGCTCGTCGGGGCCGCGGTGGCGGTGGCGGTGGCGGAGCGGGCGCGAATGCGGCGATGAGCCGGAGAGAGACCATTAGTGGTGGGATGGGGAGCTTGGCGTTCACACAAGACACAACACAAAGAAGTGAGACTTGATGATTTTATACGGACTTGAGGATTTTGTACGGAGCAGCTGTACACAGTACACGTGTACATCTGTATCCATACCGTAGGTGTACTTAATTTTTTTAAAAAAGATAAATTTAATTACCCCTTCAATTTCTAAATCACTTGAGGTTGCGTTGAAACGGACAAATAGAAAAGAATTCTCGTTTTCCGTGTGTACGTTTATCAGCTGCGTTTTTTTGGAAAAAAATCGAAAATTGTTTTAATATAAATCATATTAATCTATTTTTAATTTTTTTTGAAAATCGTACTTAAACTTTATAAAAATATTGAATTCACATTGTTTCTAACATTCTATTGTTATTAGATTGTACTTGGCATATATCATTTTGTTTTTTATTCTAAACTATAACTGATTTGAATTTATTAATTACCTAATTTAAATATATATATTATTAGTCTAAATTATTTTTAATATTAAAATATTAAAATATTATAGATATATCACAATGTTTTAGAGACGGGAAGATAAAGTAAGTTCGATGGTTTCAATTTATAACCTGATAAAAAAAGAATGCTAAATTAGATTCATGCCAAGTGGCACAATATATATTTTAGAAAATTTATAACCTAATAAAGAAAAAAAATGTTAAATTAGATTAATACCAAGTGTTATCTTTTAGAAAATATTGTGGAATGAAAACTTCTTATAAGAATATACCTTAATAAAAAAGATATTTTGTGTGTTATGAGTAGCTTGTGGTATGGATTCTTCTGAAGAAATTTATGTGAGTTTGGATGAGTACAAATTATTTTCTGTACAACTATTCTAAGAGTGTTTGGATGAGATTCAATAACCAAATTACATCTGCTAAAAACAAAAAATCAAAATTAACAAGTTGAAAGTAGGTGGAGCTGGGCAGAGGCAGATCTAACCCAGTTTCGGTTGAACCCCCAAACTAAACTTTTCTGAGGGATAACGCAGAATAGCTGATGATGAGGTGTGGCCGTGTGGGTAGGGAGGGATGCTCACCGGCGAGCGACGATGCGGTGGGAAGCAGGAGGACGCCGGGCGCAGGATGGGGATCGGCGCAAGCAAGCGGCGGGGCGATCGAGGAGACGAAACTGGAGGCCGGATGGGATGGATTCACCCTCACCGGTGTCGGTGAGCGAATGCGGCGGGAGCAGGAGAACGCCGCCGCTACCTCTGCTCTGCTAGCAGCGCGAGGAGACGGGAC
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| CDS seq | ATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAG
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| Protein seq | MVSLRLIAAFAPAPPPPPPPRPRRAPPSAARLASNGIAFVTVAAVAAASPPAIAALAAEPANALSLPTWAVHVSSVAEWVTAMALVWDYGERTGLKGWKGLSWGMVPLLGGAMCACTWHFFYNSESLEVLVALQGALTVIGNITMCIAAFRIFKASQESSKSS |
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| Function | Ycf49-like protein [UniProtKB/Swiss-Prot:Q55720] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0379400 | OsNip_04t0379400-01 | Chr04 | 18535168 | 18538577 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTCTCTCTCCGGCTCATCGCCGCATTCGCGCCCGCTCCGCCACCGCCACCGCCACCGCGGCCCCGACGAGCGCCGCCGTCCGCGGCGCGCCTGGCGAGCAACGGCATAGCCTTTGTCACTGTGGCAGCCGTAGCCGCTGCCTCGCCGCCAGCGATCGCCGCGCTGGCCGCCGAGCCGGCCAACGCGCTCTCGCTGCCCACTTGGGCCGTCCACGTCTCCAGCGTCGCCGAGTGGGTGACGGCTATGGCGCTGGTTTGGGACTACGGTGAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTCTCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAG
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| Protein seq | MVSLRLIAAFAPAPPPPPPPRPRRAPPSAARLASNGIAFVTVAAVAAASPPAIAALAAEPANALSLPTWAVHVSSVAEWVTAMALVWDYGERTGLKGWKGLSWGMVPLLGGAMCACTWHFFYNSESLEVLVALQGALTVIGNITMCIAAFRIFKASQESSKSS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0379400 | OsNip_04t0379400-02 | Chr04 | 18535166 | 18538598 | - | IsoSeq | ||
| CDS seq | ATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACAAATGCCAGCTAAAGCCA |
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| Protein seq | MLRRKKIKAADGLQLLQKDVCMYQFYKCQLKP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr04 | 18535581 | 18536927 | - | OsNip_04t0379400-01 | OsNip_04t0379400-01,OsNip_04t0379400-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.312654 | 3.782099 | 6.553401 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g31010 | RBH | 2.793301 | 2.452615 | 1.408019 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0379400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010610 | RBH | 5.432481 | 3.077231 | 7.473549 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011370 | RBH | 0.553358 | 0.000000 | 5.279267 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011060 | RBH | 5.456453 | 3.043710 | 7.078399 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0287600 | RBH | 8.686419 | 6.781625 | 7.4260115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009490 | RBH | 1.265470 | 0.000000 | 1.422409 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0292100 | RBH | 6.8259385 | 7.89354 | 4.0559915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010600 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009680 | RBH | 1.428929 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009730 | RBH | 5.112646 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010230 | RBH | 1.770259 | 0.000000 | 1.889595 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010840 | RBH | 1.721062 | 0.809585 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
