Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0367201 | OGI:04046380 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:17816534-17818582 | ||||||||
| Gene Symbol | WAK41, OsWAK41 | ||||||||||
| DNA seq | CAACCATTTGTTATGTATGGATTTCCTTGGTATCCCTGTGCACATTTGCATCGGTAACCAACAAACGTATCAGTAGGTTTGCTTGTTATACACTCGCTGTTGGTGCTTATGCAGGCATATCCAGAGCTGTTTCGTTTTGCATCTTGACATGTTAGATGAGCAGCAACCCATAGGACAGAAACAATTGGTGTCCCAACCTGAAAATAGAAACTTTGTAGCCCCGGTTCATAATAATAAGCTCCCTGGTCAATGTATTCAAGAGTCCCGTTGTCCACGTATATGTTTTGTCACTTGATGCTGGCTAGCTTCCAATAGGAGGGTTGATGATGTCGAATTTGTGCAGTTGAGGTAAAATCCTTTTGTTGCAAAACAACCTTCTTCCAAGCCAAACGGGAATGGAACGCTGATATTCCCGCACTGGCGGATACAATTCATTTTCCGTTGTAATGGGTTATACTCTGATTCCAAAGAAAAGAAAAATAAATCATTCATGATTATTAGCATATATATTTGAATCTTCAAAACTATTTATCTAAATGCCCGAAATTGTCTATGTATCACTTTTTTTTCTGCCACTAGATCATCATTCGATACACTCATATTCAGTTATTGAGAAGGTAACACAGAGTATAATCTAACTTTAAATGAATGCTATCACTTTTACAATCCCTACCAATGGAGAATGAAAAATATTCTAATTAATATATCACAATGCATCTTCGTCAACAGATAAATTAAAAACAATCAATGAAAATTAAAATAAAGTTATACTAGAGTTGTATATATATTAAGCTTACCTACAGTGTGTTGTGTAAACTTATATGACTGGTAAGTAAGAAAATTTGAACTGAATGATAGTTTATTCTACAGTTCTCCATATTTTGTTTGCTGCAGATTGGCTTAAAAAAAAGATGTGCAGGCTATAGGACTACAGCTTCTGTTTCTATGAGAGAGATATGTGCATATTTGATTTTAATCCCTTCAAATTGGATCAAGATTGACGAGGTACTTCATTTCTAATAAAGGGATTTAGTCTATCGCTGTCTTTTCAAACAAATGCTAGTACGCATTAAAAAAACATTGGGTTTGGAGATTACCATTATTCGGTGAACAGCCATCCAAAATATAAGGATTGCCTATGTAGCCATTACGGCACATGCAGTTGTAGCCTTGTTTGACGTCGTCTGGGTCGATGCAAATGCTCTTGTTGCTAACACAAGCATAGCTCGTCTGGTTTTTACGGGCGCTTGCGCAGTCTGGTTGATCAGGGATCTTCCAACTGAGACCACGCGAAGCAGGATCAGTGATATAGATCGTATCCCATGACAAGCTTCGGTTATGGTACGATTCTAGATTGGTTTCTGCTTGGCGGACGAATTTAAATTCGATAGTAGATGAATAAGCATTGATCTCGGCACCAAAGTCGATAGTGCAACATCCTGTGCCGTTGCAATGCTGCATAGGAGACACCATACCCGTGCTCTCTCCTTTAGGACAGGTTGCTGTGCAGTTGGGAGTTGCTTTGTTGATTGATGGACGATTTAACCAATAAACATCAAAGTCACAGCCGGAGAAACGTAGTCCCCACAGCGTCAGGTAAAAAGCATCAAGAGAATGTTCAAGCAATTTTGGAGATAACGACCAGCTCACAACGGATGCATTTCTCATGGAGATGGTATGAGAAAAGCGGGTGCTAACACTGTTATCTGTGTCCATAAACTCTGTAGAAACGATGTTAATACTACCAGCAATTTGGGTGATACCATCGTGGAAGAGGAGTCTCGGAGGGCTTGTGGTGGAGTCGCAGGTGAGCTCGAAGTCGGGACTTCGGAAGCAGCCGGAGCCGATGCCGAAGGGGTACACGAAGGTCAGATCGCCGCATGAGCTCTGGCAACCGGCGAGGGTGGCCGTTGATGGAACCACCCGGCCATGCCCTTCTTGCCTTCTTGGCGCAGCCAAATCCTTCGCCGATGTCAGTAGCGTCGTCGTCGCCAGCAGGAAGACAAGCAAAAGTTGCAGGGAATTCGCGGCGTGTGGTGAGCGGATCAT
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| CDS seq | ATGATCCGCTCACCACACGCCGCGAATTCCCTGCAACTTTTGCTTGTCTTCCTGCTGGCGACGACGACGCTACTGACATCGGCGAAGGATTTGGCTGCGCCAAGAAGGCAAGAAGGGCATGGCCGGGTGGTTCCATCAACGGCCACCCTCGCCGGTTGCCAGAGCTCATGCGGCGATCTGACCTTCGTGTACCCCTTCGGCATCGGCTCCGGCTGCTTCCGAAGTCCCGACTTCGAGCTCACCTGCGACTCCACCACAAGCCCTCCGAGACTCCTCTTCCACGATGGTATCACCCAAATTGCTGGTAGTATTAACATCGTTTCTACAGAGTTTATGGACACAGATAACAGTGTTAGCACCCGCTTTTCTCATACCATCTCCATGAGAAATGCATCCGTTGTGAGCTGGTCGTTATCTCCAAAATTGCTTGAACATTCTCTTGATGCTTTTTACCTGACGCTGTGGGGACTACGTTTCTCCGGCTGTGACTTTGATGTTTATTGGTTAAATCGTCCATCAATCAACAAAGCAACTCCCAACTGCACAGCAACCTGTCCTAAAGGAGAGAGCACGGGTATGGTGTCTCCTATGCAGCATTGCAACGGCACAGGATGTTGCACTATCGACTTTGGTGCCGAGATCAATGCTTATTCATCTACTATCGAATTTAAATTCGTCCGCCAAGCAGAAACCAATCTAGAATCGTACCATAACCGAAGCTTGTCATGGGATACGATCTATATCACTGATCCTGCTTCGCGTGGTCTCAGTTGGAAGATCCCTGATCAACCAGACTGCGCAAGCGCCCGTAAAAACCAGACGAGCTATGCTTGTGTTAGCAACAAGAGCATTTGCATCGACCCAGACGACGTCAAACAAGGCTACAACTGCATGTGCCGTAATGGCTACATAGGCAATCCTTATATTTTGGATGGCTGTTCACCGAATAATGTATAA
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| Protein seq | MIRSPHAANSLQLLLVFLLATTTLLTSAKDLAAPRRQEGHGRVVPSTATLAGCQSSCGDLTFVYPFGIGSGCFRSPDFELTCDSTTSPPRLLFHDGITQIAGSINIVSTEFMDTDNSVSTRFSHTISMRNASVVSWSLSPKLLEHSLDAFYLTLWGLRFSGCDFDVYWLNRPSINKATPNCTATCPKGESTGMVSPMQHCNGTGCCTIDFGAEINAYSSTIEFKFVRQAETNLESYHNRSLSWDTIYITDPASRGLSWKIPDQPDCASARKNQTSYACVSNKSICIDPDDVKQGYNCMCRNGYIGNPYILDGCSPNNV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0367201 | OsNip_04t0367201-00 | Chr04 | 17816534 | 17818582 | - | RAP2018-11-26 | ||
| CDS seq | ATGATCCGCTCACCACACGCCGCGAATTCCCTGCAACTTTTGCTTGTCTTCCTGCTGGCGACGACGACGCTACTGACATCGGCGAAGGATTTGGCTGCGCCAAGAAGGCAAGAAGGGCATGGCCGGGTGGTTCCATCAACGGCCACCCTCGCCGGTTGCCAGAGCTCATGCGGCGATCTGACCTTCGTGTACCCCTTCGGCATCGGCTCCGGCTGCTTCCGAAGTCCCGACTTCGAGCTCACCTGCGACTCCACCACAAGCCCTCCGAGACTCCTCTTCCACGATGGTATCACCCAAATTGCTGGTAGTATTAACATCGTTTCTACAGAGTTTATGGACACAGATAACAGTGTTAGCACCCGCTTTTCTCATACCATCTCCATGAGAAATGCATCCGTTGTGAGCTGGTCGTTATCTCCAAAATTGCTTGAACATTCTCTTGATGCTTTTTACCTGACGCTGTGGGGACTACGTTTCTCCGGCTGTGACTTTGATGTTTATTGGTTAAATCGTCCATCAATCAACAAAGCAACTCCCAACTGCACAGCAACCTGTCCTAAAGGAGAGAGCACGGGTATGGTGTCTCCTATGCAGCATTGCAACGGCACAGGATGTTGCACTATCGACTTTGGTGCCGAGATCAATGCTTATTCATCTACTATCGAATTTAAATTCGTCCGCCAAGCAGAAACCAATCTAGAATCGTACCATAACCGAAGCTTGTCATGGGATACGATCTATATCACTGATCCTGCTTCGCGTGGTCTCAGTTGGAAGATCCCTGATCAACCAGACTGCGCAAGCGCCCGTAAAAACCAGACGAGCTATGCTTGTGTTAGCAACAAGAGCATTTGCATCGACCCAGACGACGTCAAACAAGGCTACAACTGCATGTGCCGTAATGGCTACATAGGCAATCCTTATATTTTGGATGGCTGTTCACCGAATAATGTATAA
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| Protein seq | MIRSPHAANSLQLLLVFLLATTTLLTSAKDLAAPRRQEGHGRVVPSTATLAGCQSSCGDLTFVYPFGIGSGCFRSPDFELTCDSTTSPPRLLFHDGITQIAGSINIVSTEFMDTDNSVSTRFSHTISMRNASVVSWSLSPKLLEHSLDAFYLTLWGLRFSGCDFDVYWLNRPSINKATPNCTATCPKGESTGMVSPMQHCNGTGCCTIDFGAEINAYSSTIEFKFVRQAETNLESYHNRSLSWDTIYITDPASRGLSWKIPDQPDCASARKNQTSYACVSNKSICIDPDDVKQGYNCMCRNGYIGNPYILDGCSPNNV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0367000 | RBH | 0.315103 | 0.433783 | 0.543453 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g29880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0367201 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009890 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010640 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0295300 | RBH | 0.0188215 | 0.172501 | 0.0460255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007430 | SBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0279700 | RBH | 0.0112685 | 0.153417 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010310 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007430 | SBH | 0.356466 | 0.198420 | 0.751504 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010190 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009340 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009390 | RBH | 0.0 | 0.0 | 0.0 |
