Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0364800 | OGI:04055430 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:17560683-17561234 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGATGACCAATTGCCTCCTCGCGCTCGCCATCGCGGGCGTCGTGCTCGTCTCCCTCCCTGGACTCTCGCGCGGCGACGGCGAGTGCAACCCGAGCGGCGCGATCCGGTCGAGCACGACCCACCGGTGCCAGGACTGCTGCAAGGCCGGCCAATCCTACCCGACGTACACTTGCTCGCCGCCGACCACCGGGAGCAGCACCGACGCGGTGATGACGCTGAACGACTTCGACGCCGGCGGCGACGGCGGCGGCCCGTCGGAGTGCGACGAGATGTACCACAGCAACACGGAGCTGGTGGTGGCGCTGTCCACGGGGTGGTACGCCGGCGGCAGCCGCTGCGGCAAGAGCGTCCGGATCAACGCCAACGGCAGGTCCGTGCTCGCCAAGGTGGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACGAGGAGCACGCCTACCAGCCGCCGTGCCGCCCCAACGTCGTCGACGCGTCGCAGGCCGTGTGGGACGCGCTCGGCATCACCGGCGAGGACGTCGGCGAGTACGATATCACTTGGTCGGACGCATGA
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| CDS seq | ATGGCGATGACCAATTGCCTCCTCGCGCTCGCCATCGCGGGCGTCGTGCTCGTCTCCCTCCCTGGACTCTCGCGCGGCGACGGCGAGTGCAACCCGAGCGGCGCGATCCGGTCGAGCACGACCCACCGGTGCCAGGACTGCTGCAAGGCCGGCCAATCCTACCCGACGTACACTTGCTCGCCGCCGACCACCGGGAGCAGCACCGACGCGGTGATGACGCTGAACGACTTCGACGCCGGCGGCGACGGCGGCGGCCCGTCGGAGTGCGACGAGATGTACCACAGCAACACGGAGCTGGTGGTGGCGCTGTCCACGGGGTGGTACGCCGGCGGCAGCCGCTGCGGCAAGAGCGTCCGGATCAACGCCAACGGCAGGTCCGTGCTCGCCAAGGTGGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACGAGGAGCACGCCTACCAGCCGCCGTGCCGCCCCAACGTCGTCGACGCGTCGCAGGCCGTGTGGGACGCGCTCGGCATCACCGGCGAGGACGTCGGCGAGTACGATATCACTTGGTCGGACGCATGA
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| Protein seq | MAMTNCLLALAIAGVVLVSLPGLSRGDGECNPSGAIRSSTTHRCQDCCKAGQSYPTYTCSPPTTGSSTDAVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRINANGRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITWSDA |
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| Function | Putative ripening-related protein 1 [UniProtKB/Swiss-Prot:Q7XVA8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0364800 | OsNip_04t0364800-00 | Chr04 | 17560683 | 17561234 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGATGACCAATTGCCTCCTCGCGCTCGCCATCGCGGGCGTCGTGCTCGTCTCCCTCCCTGGACTCTCGCGCGGCGACGGCGAGTGCAACCCGAGCGGCGCGATCCGGTCGAGCACGACCCACCGGTGCCAGGACTGCTGCAAGGCCGGCCAATCCTACCCGACGTACACTTGCTCGCCGCCGACCACCGGGAGCAGCACCGACGCGGTGATGACGCTGAACGACTTCGACGCCGGCGGCGACGGCGGCGGCCCGTCGGAGTGCGACGAGATGTACCACAGCAACACGGAGCTGGTGGTGGCGCTGTCCACGGGGTGGTACGCCGGCGGCAGCCGCTGCGGCAAGAGCGTCCGGATCAACGCCAACGGCAGGTCCGTGCTCGCCAAGGTGGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACGAGGAGCACGCCTACCAGCCGCCGTGCCGCCCCAACGTCGTCGACGCGTCGCAGGCCGTGTGGGACGCGCTCGGCATCACCGGCGAGGACGTCGGCGAGTACGATATCACTTGGTCGGACGCATGA
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| Protein seq | MAMTNCLLALAIAGVVLVSLPGLSRGDGECNPSGAIRSSTTHRCQDCCKAGQSYPTYTCSPPTTGSSTDAVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRINANGRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITWSDA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.405676 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0637000 | RBH | 0.000000 | 0.217803 | 14.539249 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g29550 | RBH | 0.206636 | 0.210761 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0364800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009780 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010350 | RBH | 0.540625 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009960 | RBH | 0.182621 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010190 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0276900 | RBH | 0.024223 | 0.1640695 | 0.050998 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009260 | RBH | 0.0 | 0.0 | 0.222734 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0275900 | RBH | 4.0246785 | 0.0512415 | 1.436731 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009490 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010100 | RBH | 0.738729 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009250 | RBH | 0.302671 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026140 | SBH | 0.0 | 0.0 | 7.087730 |
