Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0320000 | OGI:04048880 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:14698828-14703781 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACACCATCCAGAACGGCTCTTGCGGTTTTAGGCAAAATGGAACTGAAATATGAACAGGCAGAATAGCTCCAAGATGGCATCTATATAGACAGACACTGCACAGATTTCGCCATCCAGAACTCAGCTCTTTCTTGGTCCGTAAAATACTGATTACGACCATGTTAAGTAGAGGATCATCTTCATTAATTTGATGGACACCTCCAGATGAACAAAGAAAAGATATATACTGATTCAGAGCGATGCAACCTTGTAGGCTGTTCCTGTAATAGAAGAAAAAAGTGTTCAGCGCCATTTAGCGTGCTAGGTTTAATGTCTCTTGTTTACATGAATATGTGTAGGTAAGCTATGAACATGTGGAATCATATCATAACTGTCTATGCGCTGAAAATCGAATAACTTACATCGGGTGGAACGAGTCCACGATTTATAGGCTTGTGTGTTGCAATTTGCAACTGAAGGACTGAGGCTTTTCTGCAAAGAGGTTATGTGCTGTGGCTGACGGGAGCTGCCCTGTGTACACCGTGCTAACTTTTTCGGGCTCAAGGTGGCAATTTTCCCAGCCGCTTACGCGCACGAGAAGTGAGCCGGTGGTTTCGGTGGAAATGCATCCGATTTCATTTAGCACGGTATTGTATTTCTCTTGGATGACGAAAGAATGGCTGCTTGCAGCTTTGTGAACATCCTGGAATGGCTGTCCAAGACTTCCTTCATCACTTCGGTCTTCTAGCCTGGTTGAATGAGCAGCGACTCAAAATTGAAGAAACTTTTTTTTTGCAGTAGGATTTGACAGAATTGATGAACAAAAAAAGGAACATCAGCAACAAAAGAGTGTAATGGGGGAAGGATCCGAAACAAAGCAACGATACTTTGATTAATTGATTGATATATATTTGTGGAGATGTCAAAACAACAAGGCAGCAATACAAATAAGTCAACTTTAGGGTTTTAGTATAGTCCCTGAAAACCAGAAAATTGCAAATCAATAATCAATTTTTGGCTGTCTGAAGAGGCTGGTAGTCATAAGATCTGATTTTGAAGGTCAGGTTAATTTTCAGACTTCTGTGAGAACGACTGTGAAAGTTCAGAATTGGAAATTCGACTTCTTCCTGACCAGAACTGCATCCAAGCATAGGACATACGGAAGGTGCAAAGTAGATATTTTACATACATGTCGGGGGATGCATCGGGGTTGTAGTCTTGCTCCTACAGGATAGCAGCTGAATTATAAAGGAGCAAGTGAACACAAATAATTGCACACCACATGCCCCCATGGACATACCTCAGCAATGAACTCCCATTTTTCATCCTTAAGAGATTGCCGTACAACATCACCATGATCATACACAATCTGGGTTTCAAACAAAAGAAAAGAGAATATCTAAATATGAAGTCAAGTGAAAGGAAGCAAAAGAAACGGTGCCCAAATTAATAAATGGAGCATGGAAAGTGCAGACAAAGCCCACATGCAAAATGTTCACCTCGTGTGTTTCTGAAGAAGCATCAAATGACTTAACCAATCCATTGTAGAACCTGCAGAGCATGCAATGAATTCAAAATTAATAAGAGAAGCCTAAAACATACACACATAACTCCAGTATAACTCATGAGAGTTCGTTATAAAACCAGAGGACTAAAGCAATGGAAGTTCAATAAGAACCAGCATTAACAATTGAACAATATAGCAAATGGTAAAACATTGGTACATAGCTCCATACACCAGGTTTAAGTCGCCAAAAGTTTTATATAAACAAGTCCAATGAATAAACAACAAACCATTGAGCACTAATTATAATATAGATGCATGTTTTAGAACATCTCTTCAAATAAGAAACATATTTGATGATTATCACACTTACATTTCATCAGCAGGCCACCGTACTTTGATTCTCGAGCCGACAATGCTACCGTCAAGAGCTTTTTTATTTGAATTAGGAGCCTGACAAGAGGACATAAAGCTTGTAACTGAAACAGAGAGCATGGTGGAACAATAATGTTTACTTTTGACATTCAGCAATCAGGCACGCATACCTCTTTAGTTCCCTGTACAATTTCCGGTTTCAACTCATCCCCACTATCTGCTGGTTGTCCTATAGTTTTACCCATCATGGTCGAAGATTTAGGAGACACTACTTCCTTCTTAATAATGAAATAGTCAGTGCGGTTGACCAATAAGATGATCATAGCATGGACAAAACTTTCAATACAACTGTTAGAACTCTATGAACTCTCTCTGTGACAGATTACCATTGCCAATCATAAAGCTGTAGAACTTTGTTCAAATGAAGATGATAAACTTTTCAACAACACAATGATCATCAAACAATGGGGATATAAGCTATACATTTGAAAACGATGAGCTATGGTTCTACTAACTGTAAACAGTAGTTTCCACCAGCCACTTCAAATACGAAGACCCCCAAAAGTGAATTATGATTAAGTAAAACAGATATTCAACCTTTAACTGGTAATACCCATGCATGTGTGGTGTGCAGTGCAAACAACTCAATATATTGGCTGGTAATAAAAGTACTACTTTAAAATTGAAATCCTAATCAGTGTGTTGGTTACATGATAGTAATATTGCAATGATCAGCTAGTTGGAAATATATTACATAGAATATATAGGTTAAATTTCACAAAACCCAGTTTTCAAGACATTCATAGCACAAAACCATAGGTACTACAATTTTTTTTCAAGGAACCCTATGTTTTGGGGCAGTAACCATTAGGGCAAAAATATTATCCAAATATGTAGAAGTAGTAAAGCAGTTTAACTGACCATGTCATGCATAAAAGCACCAACATTGTTATCTCCAGCAACTATAGCATCTTGGAGAAATGATGTAACAAGATTGCTATACTCGGTTATGGGAGCACCCTGAAGTAGTTTGATGAACACTGGCTTTAACTTTTCATGGCAGAGTCCTATTACCCTCTCTGCAAGTACAAAAGATGCTGGAGGAGTTTCCTACAAGCCAAGTTGAAAACTTTAGTGAAGATGATGTTATATTGTTGATACAAACAATGTATGGACCAAATTACTTTTTCTTCCTTTTTAACATTCTGAAGCAGGCAGGATGCCAGATCTTTAATTAGATCTTGTTCCATATCAGTAATATCTTCGATCACAAACTTCATTATGGTTTCCATATAGGATATAACATGCTCCTGATGAGTATTGCTGAAATAAATGAAAAACGTTAAGGAATGAAAGGGTAATAAAAGCACCTGATAATTTTAATAAAGCATACACAAGACAAAAACATGCATGCACACATTTAGAGGAAAAGGCGTCTGCAATATACACACAAATAGAGGGATTCTTGAAGTAACAAACTGCAGTGACATTGTGAGCTCTTATCTCATAGCATTTTGTTAATTCATAAGCAGAACAATGGTATAATCTCAACTTGCAGCAACTCAAATCACGGTGTACTTTGTAGAATACTATGTTAGAAAAAAAATACAGCAATTGACAGCTCTTGACACACAAATGGAGTAAAACAGTGGAAACAAAGAATAATTAATGGTGGGTTGTATCACTATTTTTATGGGCCAGGATAAACTGTGCCTCAGTTCTAAAATGAAGAACAACAAAGGGGTGAAATTTTGTAGCACCATAAAAGGTGTCATTAAATTTTATTAGAAAAGACAAAATGATGAATGATGTATATGCAAAATGATGTTCTGTGTGGACCGAAAATAATTACATAGATGCTTTCAGTGTTATGGTCAGTATAACCGATCAGCTTAACAATTTAAGTGAAATGCATAAAGCATGCAAACTACATAGAAAAGCCATCTTTACAATGTTTCCCTGAATCAGAGTAACTTTAAACATGGTTATAACCTGCATCCTTCACCTTCTCTGTATATTCCACAACCATAAGTCCATAACTATGTCATATAAACTGCCACAGTCATTCATACGCATCTTTTAAAGTCAAGAACAGGACTGCAACATCTCTGTAATCCATTTGACAGAAATTATGACAGAATGGACACAAGTATGGCAGAAAAACAGAGAAAGAAGTTGCATACGATACGGTGCGGAAGAAATGGTGAAACATATCCCGTATCAGATCATTGCAGTCAAGATCTAACAACAAGGCACAACCCCGTATCCTTGCAAAAGTTCCAAGCATTGAAACCCTTGTTCCATAGGAGGGGCAGTCCACATCATCCAGTTCACAGAAGACCCCAACAACAAGCTTGAGAACATCCTGAAACAAGGTAAGAGATAAAGGTCAGTAATACACTCAAACACCACCATTTCATCCCCAGAAGAACAAGAAGAAGAGAAAGTCACCTTCATCACATCATCATCATAAGGGGGATCCGGCGCGCGGATCTTGATCAGCGTGGTTAAACACGACGCTACGGCGAGCTTCACTCCGGGGTCAGTGTGATCCAGTAGCTCTTTCTTAATCAATGCTCTCATAACAGGGATAAGAGCACTGTGAATTCTGTCTACCTCACACTGATTCACTCTGTACAACAATTTGGCTGCTTCCTGCATAAAAGAAAAGAAATTCTAAAAAAAGTCTCTACATGGTCAATCAGATCCAATCCAAACAATACACTTCTGTAACCACAGTCAAGCCAAACAACACAACAGCTAAATAAAGTCTTGTTCAAAATTTGATTTATTTTTCAAAGAAGGCAATAGAGAGCTAACTAAAGATTAGAGTCCATTATAACAATCCAATGCTGGAGTAGAGATTCTAGTATTGCCGAAACTCCTACTTTTGCAGCACCCTAATTACTTCTAATTGAAATGGTATTACTTGAGAGTTGATGAATAGTACATAATAAATCAAGGGTTCGAACTGGGGGGCAGAGCTCACCTGGAGCAACCTGAGCAGCTCGCCGTCGTCCGGAAGCGAGCTCAGGCGGGCGCCGACGTCGCGCAGCCGCCGCCGCACCTCCACCTCCGCGGCGTCCCGCTCCAT
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| CDS seq | ATGGAGCGGGACGCCGCGGAGGTGGAGGTGCGGCGGCGGCTGCGCGACGTCGGCGCCCGCCTGAGCTCGCTTCCGGACGACGGCGAGCTGCTCAGGTTGCTCCAGGAAGCAGCCAAATTGTTGTACAGAGTGAATCAGTGTGAGGTAGACAGAATTCACAGTGCTCTTATCCCTGTTATGAGAGCATTGATTAAGAAAGAGCTACTGGATCACACTGACCCCGGAGTGAAGCTCGCCGTAGCGTCGTGTTTAACCACGCTGATCAAGATCCGCGCGCCGGATCCCCCTTATGATGATGATGTGATGAAGGATGTTCTCAAGCTTGTTGTTGGGGTCTTCTGTGAACTGGATGATGTGGACTGCCCCTCCTATGGAACAAGGGAAACTCCTCCAGCATCTTTTGTACTTGCAGAGAGGGTAATAGGACTCTGCCATGAAAAGTTAAAGCCAGTGTTCATCAAACTACTTCAGGGTGCTCCCATAACCGAGTATAGCAATCTTGTTACATCATTTCTCCAAGATGCTATAGTTGCTGGAGATAACAATGTTGGTGCTTTTATGCATGACATGAAGGAAGTAGTGTCTCCTAAATCTTCGACCATGATGGGTAAAACTATAGGACAACCAGCAGATAGTGGGGATGAGTTGAAACCGGAAATTGTACAGGGAACTAAAGAGGCTCCTAATTCAAATAAAAAAGCTCTTGACGGTAGCATTGTCGGCTCGAGAATCAAAGTACGGTGGCCTGCTGATGAAATGTTCTACAATGGATTGGTTAAGTCATTTGATGCTTCTTCAGAAACACACGAGATTGTGTATGATCATGGTGATGTTGTACGGCAATCTCTTAAGGATGAAAAATGGGAGTTCATTGCTGAGGAGCAAGACTACAACCCCGATGCATCCCCCGACATGAACAGCCTACAAGGTTGCATCGCTCTGAATCAGTATATATCTTTTCTTTGTTCATCTGGAGGTGTCCATCAAATTAATGAAGATGATCCTCTACTTAACATGGTCGTAATCAGTATTTTACGGACCAAGAAAGAGCTGAGTTCTGGATGGCGAAATCTGTGCAGTGTCTGTCTATATAGATGCCATCTTGGAGCTATTCTGCCTGTTCATATTTCAGTTCCATTTTGCCTAAAACCGCAAGAGCCGTTCTGGATGGTGTGA
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| Protein seq | MERDAAEVEVRRRLRDVGARLSSLPDDGELLRLLQEAAKLLYRVNQCEVDRIHSALIPVMRALIKKELLDHTDPGVKLAVASCLTTLIKIRAPDPPYDDDVMKDVLKLVVGVFCELDDVDCPSYGTRETPPASFVLAERVIGLCHEKLKPVFIKLLQGAPITEYSNLVTSFLQDAIVAGDNNVGAFMHDMKEVVSPKSSTMMGKTIGQPADSGDELKPEIVQGTKEAPNSNKKALDGSIVGSRIKVRWPADEMFYNGLVKSFDASSETHEIVYDHGDVVRQSLKDEKWEFIAEEQDYNPDASPDMNSLQGCIALNQYISFLCSSGGVHQINEDDPLLNMVVISILRTKKELSSGWRNLCSVCLYRCHLGAILPVHISVPFCLKPQEPFWMV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0320000 | OsNip_04t0320000-00 | Chr04 | 14698828 | 14703781 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGCGGGACGCCGCGGAGGTGGAGGTGCGGCGGCGGCTGCGCGACGTCGGCGCCCGCCTGAGCTCGCTTCCGGACGACGGCGAGCTGCTCAGGTTGCTCCAGGAAGCAGCCAAATTGTTGTACAGAGTGAATCAGTGTGAGGTAGACAGAATTCACAGTGCTCTTATCCCTGTTATGAGAGCATTGATTAAGAAAGAGCTACTGGATCACACTGACCCCGGAGTGAAGCTCGCCGTAGCGTCGTGTTTAACCACGCTGATCAAGATCCGCGCGCCGGATCCCCCTTATGATGATGATGTGATGAAGGATGTTCTCAAGCTTGTTGTTGGGGTCTTCTGTGAACTGGATGATGTGGACTGCCCCTCCTATGGAACAAGGGAAACTCCTCCAGCATCTTTTGTACTTGCAGAGAGGGTAATAGGACTCTGCCATGAAAAGTTAAAGCCAGTGTTCATCAAACTACTTCAGGGTGCTCCCATAACCGAGTATAGCAATCTTGTTACATCATTTCTCCAAGATGCTATAGTTGCTGGAGATAACAATGTTGGTGCTTTTATGCATGACATGAAGGAAGTAGTGTCTCCTAAATCTTCGACCATGATGGGTAAAACTATAGGACAACCAGCAGATAGTGGGGATGAGTTGAAACCGGAAATTGTACAGGGAACTAAAGAGGCTCCTAATTCAAATAAAAAAGCTCTTGACGGTAGCATTGTCGGCTCGAGAATCAAAGTACGGTGGCCTGCTGATGAAATGTTCTACAATGGATTGGTTAAGTCATTTGATGCTTCTTCAGAAACACACGAGATTGTGTATGATCATGGTGATGTTGTACGGCAATCTCTTAAGGATGAAAAATGGGAGTTCATTGCTGAGGAGCAAGACTACAACCCCGATGCATCCCCCGACATGAACAGCCTACAAGGTTGCATCGCTCTGAATCAGTATATATCTTTTCTTTGTTCATCTGGAGGTGTCCATCAAATTAATGAAGATGATCCTCTACTTAACATGGTCGTAATCAGTATTTTACGGACCAAGAAAGAGCTGAGTTCTGGATGGCGAAATCTGTGCAGTGTCTGTCTATATAGATGCCATCTTGGAGCTATTCTGCCTGTTCATATTTCAGTTCCATTTTGCCTAAAACCGCAAGAGCCGTTCTGGATGGTGTGA
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| Protein seq | MERDAAEVEVRRRLRDVGARLSSLPDDGELLRLLQEAAKLLYRVNQCEVDRIHSALIPVMRALIKKELLDHTDPGVKLAVASCLTTLIKIRAPDPPYDDDVMKDVLKLVVGVFCELDDVDCPSYGTRETPPASFVLAERVIGLCHEKLKPVFIKLLQGAPITEYSNLVTSFLQDAIVAGDNNVGAFMHDMKEVVSPKSSTMMGKTIGQPADSGDELKPEIVQGTKEAPNSNKKALDGSIVGSRIKVRWPADEMFYNGLVKSFDASSETHEIVYDHGDVVRQSLKDEKWEFIAEEQDYNPDASPDMNSLQGCIALNQYISFLCSSGGVHQINEDDPLLNMVVISILRTKKELSSGWRNLCSVCLYRCHLGAILPVHISVPFCLKPQEPFWMV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0326000 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25960 | SBH | 0.084668 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0320000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007910 | SBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008550 | SBH | 0.0 | 0.000000 | 0.176007 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008650 | SBH | 0.202571 | 0.464533 | 0.886336 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008020 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008450 | SBH | 0.0 | 0.000000 | 0.817021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0237100 | SBH | 0.294193 | 0.8346625 | 1.6821175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007830 | RBH | 0.0 | 0.000000 | 0.050150 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0234400 | SBH | 0.131016 | 0.3482935 | 5.3573695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007750 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007980 | SBH | 0.090208 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008040 | SBH | 0.0 | 1.391037 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008210 | SBH | 0.000000 | 0.114828 | 0.147641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008560 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007900 | RBH | 0.0 | 0.866214 | 0.782741 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007990 | SBH | 0.228594 | 0.0 | 1.027620 |
