Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0304400 | OGI:04046020 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:13672710-13675884 | ||||||||
| Gene Symbol | MADS25, OsMADS25 | ||||||||||
| DNA seq | GCTATACGCATCTTCCCTAGCTTGCTAAGCTAGCTAGTCTTCTCCTTCCTTTCTCCTCTTCCTCCTCCTCCTCTTCTTCTCAATCTTGCTCAGCAAATCTTGTCGGGGAGAGAGAGAGAGAGATCAGCAAGGAGAAGAGGGAATTAAGCTAGATCGAGGTAGTCGTCGATCGATCGATTGAAGATGGGGAGAGGGAAGATTGCCATCAAGAGGATCGACAACACGATGAACCGGCAGGTGACCTTCTCGAAGCGGCGCGGCGGGCTGATGAAGAAGGCCCGGGAGCTGGCCATCCTCTGCGACGCCGACGTCGGCCTCATTGTCTTCTCCTGCACCGGCCGCCTCTACGACTTCTCCAGCTCAAGGTTGGTGATTATCATCGTCGATCCCCTTCTATAGTTCTATATGTATATAGCTGCTACCTGCTAGGTCATGAAATATATCCCAATCCTTCAGATTTTTGTCTATATATCTCGATGTGTCCAGCTATCTAGCTTTTGCTTTACTCTAGCTTAGGGTTTTCTTTGATTCTTTGGATGATCTTAAGGTGAAAGACTTCTGTTTTTTTTAGAAAAAAATAAAGAAAATCGATGCATCCATTTAGATCACTCCTTCTCCCATCTAAATAATCTCTATACACTATTAATTTGATGAATTGTGTATGCATATATTGACTCTTTCTGTTTAGTCTGGAGCATTATTCCTGAAAGAGAAGGAGATGCGCAGTAGGAGCTGGTATGCAAGGGGCTGCCAGAATGTGAGAATATATTTCTAGAAATGGTGTATACGATTTTTCTAAGTTAAATAACTCACAAGTTATCTCTAGATATATATTTATTTTGATTTGTATATTAATTTACCTCGTTTCTTAGCTGAAAATTTAGGTTAATTTCCCCTAGATGCATAAAACATTTGCTATATATTGGATCGTAATGGTATAGTCTTCCTTTTTGTTAGCATGAAATCAATAATAGAGCGGTACCAGGAGGCAGGAGAGGAGCATTGTCGGTTGCTGAACCCAATGTCAGAGGCTAAGGTATGCATTCTAATATAATGGTAGCAAATTTGAGGTAAATTAAAAATTCATTTCTTGAGGTCATCTGGTTTTGCATACAGCTACAAAAGTTGTTGACTAAATTGCCGCACTTTGTCGTCATAAACTCCATTTTCCCAATTCTTAACTAAAATTCCTATATATTCCAATGTCATTATTTGCAATTATCCTGACATTTCTACTTATGTATTGGCAGTTTTGGCAGCGGGAGGTTACAACTTTGAGGCAGCAAGTGCAAAACTTACACCACAACAACAGGTAAAATCAAGTCCAATGTCAATGATATATTACACATACAACCATAGCTAATTACACACCTCTTCTCAAGTTTTTTTTTTACCCAAATCTTAGCATAACCAGATGAACTCAAGAAATGAAGTCCCCCGCCTGGGAAAATGCTTTCTCTAGTAGTGATGTTGACCTCACTTTCTCTCTAAATTAGTTTTTACTTGTCTGCAAACTATTTAAACGAAAACAGTGCATACTACTTTATTAGGATCAACCAATATGAAGGTGAAAATGAAATCTTTTTTAAGGCCCATGTGGAAATTCATGTTTCAAATAAAAGGTGAAAATACCTTTTAATGCATGATTAATTCTACGTGCTATCAATTCTAGTCACATTCTTATATGACGTACACTGATAGGCAACTTTTGGGAGAGGAAATCTCCAACTTCACAGTTAGAGATCTGCAGCTTCTCCAGAACCAAGTTGAGATGAGCCTACATTCCATAAGAAATAAAAAGGTATAATATTGATAATACCCTTTTCTCGACTAATAAATAAATAATCTTTTCCTAATTAAATGGCGATATATCTATTGTCTCTTTACTAGGATCAACTTTTGGCAGAGGAGATTCTAAAACTCAATGAAAAGGTTGTACTTGCATCTTCTTCTTCTTGATGAAATAGCTCATGATTTAATTGGTATCAGTTCTTACATCTATACACTGTTCATGATTGAGGTAAAATTACACGAATATATATCGCTCTATACTTTTAATTGTAGGGGTCTCTTGTTCAAAAGGAGAACAGTGAACTTCGCAAGAAGTTCAACATTGCTCATCAACGCAACATAGAATTACACAAGAAGGTAAAGTTTCTATTCGATCTACTCGAAACATACAAAAATGTCGTAGAATATTATTGATATATAAATATACAATTTACATCATCTTGATTAATTAATTTCAGCTTAACTCTGGAGAAAGCACGTCAAGTGAGCAAGTTACCAGAAGCTCAAAGGATCCCGGAGAATCGAGTACACCCCGTGATTCACGTGTGTGTATTGACCTTGAATTGAGTCAAAAAGAAGTTGAAGATGAATAACACATGATCAAGTGTTAAAAACAGTGAGTTTTCAAATCTTTAATTACGTAAACCGTAAAACCTCGCTCTTGTAACTAATATATATTTCTTCAATGTTTAATCAAAGTTGTCAGAGTTCCTTACCTTTTGCTAGTATCACAAAACAAGTAGCTATTTGTTTGTGATACTAGCTAGTAATTTGTGTTAAGCTAGCTAGTAACTTGTGTTAAACTAGCTATATAAATTAAGTCACAAAATACCCATAAATTAAGCTAGCTAGCCCTTCAAATTTTGTTGTTTTTCTCTGATTAGTTAATACTATGGTTTCTAGCTAGCTAGCTAGCTAGCCCTTCAAATTAAGCACTGTACAGAACTTGTTAATTTTCTACTCATCTTTACTAGTATAAATTATGCCACTAATTAAGTTCCTAGAGTTACTTTTCATGTTCAGAAGTTGCATGCATGCATGGCAAGTTACTTTAATTACTGTGCTCTTGTTTAAAGAAAAGTGTTAACTTTATTCTAAAAAAAAAGTGTTAACTTTACAGTTACACAGATATGTCCCTCATTAGAAGGTGTAATAAATCTGTTTGTTTGCAGACATGATGGCCAGTAACTTTTGCAGCATCACGCCTACTACAAGCGCAAGAAAAGCTAGCTACTACTGGAACAAGGGATCTTAATCATGTTTTGAAACTTAATTAGTAATATTTTAAAAAATCGTACTATACTAATCATGATGTGTAGCGTATTGCACCACTGAATTTATTACTGTAATTAACATGGTGAGTGTTAAAATATTTTGTGATATC
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| CDS seq | ATGGGGAGAGGGAAGATTGCCATCAAGAGGATCGACAACACGATGAACCGGCAGGTGACCTTCTCGAAGCGGCGCGGCGGGCTGATGAAGAAGGCCCGGGAGCTGGCCATCCTCTGCGACGCCGACGTCGGCCTCATTGTCTTCTCCTGCACCGGCCGCCTCTACGACTTCTCCAGCTCAAGCATGAAATCAATAATAGAGCGGTACCAGGAGGCAGGAGAGGAGCATTGTCGGTTGCTGAACCCAATGTCAGAGGCTAAGTTTTGGCAGCGGGAGGTTACAACTTTGAGGCAGCAAGTGCAAAACTTACACCACAACAACAGGCAACTTTTGGGAGAGGAAATCTCCAACTTCACAGTTAGAGATCTGCAGCTTCTCCAGAACCAAGTTGAGATGAGCCTACATTCCATAAGAAATAAAAAGGATCAACTTTTGGCAGAGGAGATTCTAAAACTCAATGAAAAGGGGTCTCTTGTTCAAAAGGAGAACAGTGAACTTCGCAAGAAGTTCAACATTGCTCATCAACGCAACATAGAATTACACAAGAAGCTTAACTCTGGAGAAAGCACGTCAAGTGAGCAAGTTACCAGAAGCTCAAAGGATCCCGGAGAATCGAGTACACCCCGTGATTCACGTGTGTGTATTGACCTTGAATTGAGTCAAAAAGAAGTTGAAGATGAATAA
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| Protein seq | MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFNIAHQRNIELHKKLNSGESTSSEQVTRSSKDPGESSTPRDSRVCIDLELSQKEVEDE |
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| Function | MADS-box transcription factor 25 [UniProtKB/Swiss-Prot:Q84NC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0304400 | OsNip_04t0304400-01 | Chr04 | 13672710 | 13675884 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGGAGAGGGAAGATTGCCATCAAGAGGATCGACAACACGATGAACCGGCAGGTGACCTTCTCGAAGCGGCGCGGCGGGCTGATGAAGAAGGCCCGGGAGCTGGCCATCCTCTGCGACGCCGACGTCGGCCTCATTGTCTTCTCCTGCACCGGCCGCCTCTACGACTTCTCCAGCTCAAGCATGAAATCAATAATAGAGCGGTACCAGGAGGCAGGAGAGGAGCATTGTCGGTTGCTGAACCCAATGTCAGAGGCTAAGTTTTGGCAGCGGGAGGTTACAACTTTGAGGCAGCAAGTGCAAAACTTACACCACAACAACAGGCAACTTTTGGGAGAGGAAATCTCCAACTTCACAGTTAGAGATCTGCAGCTTCTCCAGAACCAAGTTGAGATGAGCCTACATTCCATAAGAAATAAAAAGGATCAACTTTTGGCAGAGGAGATTCTAAAACTCAATGAAAAGGGGTCTCTTGTTCAAAAGGAGAACAGTGAACTTCGCAAGAAGTTCAACATTGCTCATCAACGCAACATAGAATTACACAAGAAGCTTAACTCTGGAGAAAGCACGTCAAGTGAGCAAGTTACCAGAAGCTCAAAGGATCCCGGAGAATCGAGTACACCCCGTGATTCACGTGTGTGTATTGACCTTGAATTGAGTCAAAAAGAAGTTGAAGATGAATAA
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| Protein seq | MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFNIAHQRNIELHKKLNSGESTSSEQVTRSSKDPGESSTPRDSRVCIDLELSQKEVEDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g23910 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0304400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007270 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007910 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007370 | RBH | 0.0 | 0.247346 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0223700 | RBH | 0.0061455 | 0.058203 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007310 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0221700 | RBH | 0.0715225 | 0.251807 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007100 | RBH | 0.0 | 0.060683 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007350 | RBH | 0.0 | 2.492207 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007440 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007640 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007310 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007420 | RBH | 0.0 | 11.313737 | 0.0 |
