Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0300600 | OGI:04044730 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:13396868-13401252 | ||||||||
| Gene Symbol | OsbHLH007 | ||||||||||
| DNA seq | ATCTAGTAAGCCAACAAACATGCCATTACCTCCATTGTTATTGCCGAAAGATATATGATTCCTCGATTTACATCAATATATCTCAGATTAGCAGTTTATCTCTTGGGCCCTAGCTAGCAATCTAAAACTGCTGTAATATTACTGGAACATTGAAGTGGGCCGCCTGCGGCTGAACTCCCATAACGAGCGAAAATGATGATAAAAGAAATTATATTCAGATGCCAATGCAAGATTGCAACCATCGATCTTTGCTAGTAGATCATGGTCTTTTGTGAGCTACAAGTTTTTTCATCACATCAAGGTGCTGACAAGAGGGATGACTGGATCCTCTGCTTCATCTCTTGAGCACCACTCATTTGTTCTGTCTGTATGAGAGGATAAATTAGGTCAGAGAGAAACAATGTAACAAAATAAACATATCCACATGCATGATTAGATTCGTTTACATATAGGCACTAAGTTACAGAATTTATCAATATTATATTCATCTCTAGCTAGGTTAAGAAAACCAACAAAGCTCAATACGTCAATGCGTTGCAAAGTAGATTTGTGGCCCCCTTAATTATTTGCTATGGACATTAGCTCTTTTGTTGTCTTAAGAAGTACTACTGCTGTATTTTCTAGAGTTTTAGTGTGTTAATTAGTATTATTAAGAATACTCAGATATAAATACTCCATCCGTTTCAGAAGGTAAGGTGTTTTGGTTTTGTTGCAAGTTAATACTACAAAAGAGGAGTTTAATGATGGATTTAATAAAATTAATTTGTGTGCTATAAATGTTGTTAAGTTTTGTTTCTAAATGCTTGATCAACTTAAAGATATTTAATTTAGTAGTACAAAAGCAAAACACATTCTAAAATGGAGGGAGCATATATACTTGATCAATAAGTCTAGGCGCCATACACACAGAGACAGAGAGACAGATATATAGACATCCTATTCCTTTTTTTTCCTCAAATGGTATATCCTCATTTATATTTTGGGGAAAAAAGCACATTTTTTAAGGAAGATATTGAAGGCTTGAATCCGACAAGTTCTCCACCTCATTAATTCTTACAGAGGAGGAGGAGGGGTGCAAACTGACAAAGTGAATATATTGGCCATTTGTGAAATATGTAGGATCTGTGTCGTTTGTCTCGTTTCTGTATATGCGAAAAAACACATTACTTTTAATGCATGTGTGTGTGTATATAAGTTATTTTCCCAATACAGAAAGTAGACCGCGACAAATGAAAGTAACATGAGTATAAAACCTGGCCTTGATGGCATTGTCTGGTCCTTGTATTACGTGGTAATCATCCTTCGATATAGTTAATCTAAAGCCTATACACGTCTAGAGCCTGCCTCGAGCAAAAAAAAAAAAGAGGTAGATATTAAACTGGTATTGGTTTCTCTGAAATAAATAGAATGTTGCAGTGACGGAGCTAGTAATTTTATTTGTGGGGTCAATTATCGTTGTTTAATATTTTAGTGGGATCATTTACACAAAATTTAATGGATTTAAATGAAAAAAAGAGTATTCACAAGGGTGTTAGTGAAAAAGCTATCGGGTCAGCCGCCCCCACAGCTTGTAATATAAATAGCTCCGCCACTGGTATTTTATACTTCCATCAAAAGTATAAAAATAAAATTAAATATATAAATAGTTTAATTATTTTCTTGAGGGGAAAATACTTTTACTGGTCTCAATTATTTCTCTGTTCGTATATTTTGGGCTTGGAATATGTTGCTCGAAGATCTCAGGGCTGTGCTTGTGCATGAACAATCGACGACCTATGCCATGCTGCATTACTGCCCATAAACAGGCAAGTATATCACAGGAAGCTTTCGTCTTCTAATTGTTTATTAATGTCTCTTCTACGATCAAACCAGTAATTTCTTCACCAAGTCCTAATCAGTAAAAACATTATTGTTCCATCTTACACTTTGTCCATTTGAAGAAATTCTCATCAAAATATTTTGAACTAGTTATATTCTAGCCAATTTAAAGTTTCTTTCCAGCAAATTTAATGGTAGGCAGAGCATGGTGCAGAGGTCGATCAGGAATTCTCTTCCATATTATCAGGGAAAAAAAACAAATAAATGTCAATTTAGAAAGACGAGACAGCCTGTCCTATGTCCTTTAATTTCTTACTGTAGTTAGAAAATGCTGATACGATAGTCAATAGTCGTGATTAATAGCTGTTGGTACATGGTACGCATCAACATAAAGAAGATTAGTATAGTGGAAGAAGCTAGCTAGCTAGAGACACCGTGTTTAAGCAGGAATATTAGACCAGAACCTTGATTTGGCCTAAAAATTGTCCCCAACAAATTCCCTCTATTTGTAGGCCAGCGGAAAATTAAATTTTATATTGGCCTAAAAATTTCGGCACATGTTAATTAACTTATATTATCTTAATTAATTTTCGTGTGAAAGAAATGCATGTGTATATGTAACACTATAGCTTGCGACCTATTCATTCATAGCAATAAGTTCAACCCAGGGTTCATGATTTGATATTTTATTCCTCCATGTAAACGTTTTATTATGTATGGGCAAAAAAAAAATGTTATCTTCTGGATCTTCAGAATAAAAAAGTCATGTGAAAAAAGTACTACTATCTATAATGCTCCATAGGAAAATACGGCTTTTGTGAATATCTTCTGACTTCAAAAGTTTGAATTAGCGAAGTCTCCTAAAGCATCAAATACGCCACTATCTTGGTCAGCAAAGTCCAGCAACAAAAGCAAATTAATTAAAGCAGCCGCAAATCAAACAGGACGCGACGACCATTTGACATTCATCGACGACTACCTTCCCCCCACCCCCCCCCCAAAAAAAAAAAAACAAAAAAAAATCAGTTGCTGACCAGTTCAACTAGTTAGTCACCTAGGACAAACAAATATTGTTTGGTAATAAAATCATACAAATAAACCCTCACATCCCAGGTTAATTGGAGTCAGCATCCTTGGGTCACTCACATGTGTCACTCTCGTGACGTCATCCCGGTGACGTCAGCACAGTAACACGTGCAACAATTGCAACCGTGTGAAAGGATAAGTGGCAAAGTGGACCACTCAGAGATTGGTAACAGCATGAATGTGGAGGACATAATGATAGAGAGGGGATCAGGGTAGTGAAAAATGTGACATGTTATTTTGTTTGGTACCTCCACGAACATGGTGTGGACGATGGTGCCGTCGACGGCGGCGACGCTGGCGGAGACGACCTTGAGGTAGAGCGACTCCACCGCGTGGCACACCTTCGCCATGGCGCCCCTCGTCTTCGCGCAACGTATGCTCACCGCCACCGTCTTCTCGCCCACCTTGGAGACCTGGAGCTGTGGATCGGAGGGCCATGATTGTGAGGTTTGAAGGATTAAACCTTCAATTTTTTAAAGAATAATACATTTTTAATTGACGAATACTCCGTACCGAAAGAGACCTCGGTCAGATAACCAGCTAAGTTGGAAACGCACTAATCAGAAGAGTTGACAATTAGGATTGACCGTAAAAGTCCTCTGTTTCTTTTGTTTCTACCTCAAGGATTTGGAGAGGGGGTGAGGATGCCACGCGGAGGGCGCCGCCGCCACCGTCGAGCGGCGGCGTGCTCCGCAGCTTCTTCATACTCGGCATGGTGACGCCACTGTCGTCGACGTCCTCGACAGCGGTGGCGGCGACGGCGGCGGCGGACTGGAGGACGGATATCTCGTCGAGCAGTTGCCGCTCCTCCTCCTGCAGCTTCTCGATGTGCGCGATGGCGTCCCTCACGATCGACGCCTTGTCCATCTACCACACCCAAACATAAGCGCACTCTCATGATCTCATCTCATCAGAAGTGCAATTAATTCACTTGAGATCGACTGACTAATTGATTCACTAAATCAATCGATTAATCAGCTAAATTAAACCTTGGTGATTTTGGGGACGACGGCGCGAAGCGCGAAGAGCTTCTCGTTGAGCCGCTTGCGGCGGTCCCGCTCCATGGCTATGTTCTTGCTGCTCGCCGCCGCCGCCGCCGACGCCACCGCCGTCGAGCACAAGTTGACGACGTCCGGCGAGCTCGAGTCGGCGTAGCGAGACTGAGAGGTATACGCGTACAGCTCGGACAGCGACTCGTCGTACTCCTTCTCCACCATCGCCGGCGTCGCCGGCGCCGCCGCCGGGCCGTACATGCCGCCGCCGAAGCCGTCCATCAGCAAGCTAATCAACCAAACAAAATCCGTCAGTACAGAATTGGAGTCGGGTCGTCGTCGCCGGCGGGCAGCGGCGGAGGAGGGAGACGAACCTGTCGGCGACGGCGAGGTCGAAGATGTGAGGCGTGTGCCAGTAGAGGTCGAGGAGGACGCCCATGTCCGCAGCTGCCTCCATTGGAGTAGGGGGGAAGTTATGCTATTAGCAAT
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| CDS seq | ATGGACGGCTTCGGCGGCGGCATGTACGGCCCGGCGGCGGCGCCGGCGACGCCGGCGATGGTGGAGAAGGAGTACGACGAGTCGCTGTCCGAGCTGTACGCGTATACCTCTCAGTCTCGCTACGCCGACTCGAGCTCGCCGGACGTCGTCAACTTGTGCTCGACGGCGGTGGCGTCGGCGGCGGCGGCGGCGAGCAGCAAGAACATAGCCATGGAGCGGGACCGCCGCAAGCGGCTCAACGAGAAGCTCTTCGCGCTTCGCGCCGTCGTCCCCAAAATCACCAAGATGGACAAGGCGTCGATCGTGAGGGACGCCATCGCGCACATCGAGAAGCTGCAGGAGGAGGAGCGGCAACTGCTCGACGAGATATCCGTCCTCCAGTCCGCCGCCGCCGTCGCCGCCACCGCTGTCGAGGACGTCGACGACAGTGGCGTCACCATGCCGAGTATGAAGAAGCTGCGGAGCACGCCGCCGCTCGACGGTGGCGGCGGCGCCCTCCGCGTGGCATCCTCACCCCCTCTCCAAATCCTTGAGCTCCAGGTCTCCAAGGTGGGCGAGAAGACGGTGGCGGTGAGCATACGTTGCGCGAAGACGAGGGGCGCCATGGCGAAGGTGTGCCACGCGGTGGAGTCGCTCTACCTCAAGGTCGTCTCCGCCAGCGTCGCCGCCGTCGACGGCACCATCGTCCACACCATGTTCGTGGAGGTACCAAACAAAATAACATGTCACATTTTTCACTACCCTGATCCCCTCTCTATCATTATGTCCTCCACATTCATGCTGTTACCAATCTCTGAGTGGTCCACTTTGCCACTTATCCTTTCACACGGTTGCAATTGTTGCACGTGTTACTGTGCTGACGTCACCGGGATGACGTCACGAGAGTGA
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| Protein seq | MDGFGGGMYGPAAAPATPAMVEKEYDESLSELYAYTSQSRYADSSSPDVVNLCSTAVASAAAAASSKNIAMERDRRKRLNEKLFALRAVVPKITKMDKASIVRDAIAHIEKLQEEERQLLDEISVLQSAAAVAATAVEDVDDSGVTMPSMKKLRSTPPLDGGGGALRVASSPPLQILELQVSKVGEKTVAVSIRCAKTRGAMAKVCHAVESLYLKVVSASVAAVDGTIVHTMFVEVPNKITCHIFHYPDPLSIIMSSTFMLLPISEWSTLPLILSHGCNCCTCYCADVTGMTSRE |
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| Function | Transcription factor bHLH35 [UniProtKB/Swiss-Prot:Q2HIV9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0300600 | OsNip_04t0300600-00 | Chr04 | 13399837 | 13401045 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACGGCTTCGGCGGCGGCATGTACGGCCCGGCGGCGGCGCCGGCGACGCCGGCGATGGTGGAGAAGGAGTACGACGAGTCGCTGTCCGAGCTGTACGCGTATACCTCTCAGTCTCGCTACGCCGACTCGAGCTCGCCGGACGTCGTCAACTTGTGCTCGACGGCGGTGGCGTCGGCGGCGGCGGCGGCGAGCAGCAAGAACATAGCCATGGAGCGGGACCGCCGCAAGCGGCTCAACGAGAAGCTCTTCGCGCTTCGCGCCGTCGTCCCCAAAATCACCAAGATGGACAAGGCGTCGATCGTGAGGGACGCCATCGCGCACATCGAGAAGCTGCAGGAGGAGGAGCGGCAACTGCTCGACGAGATATCCGTCCTCCAGTCCGCCGCCGCCGTCGCCGCCACCGCTGTCGAGGACGTCGACGACAGTGGCGTCACCATGCCGAGTATGAAGAAGCTGCGGAGCACGCCGCCGCTCGACGGTGGCGGCGGCGCCCTCCGCGTGGCATCCTCACCCCCTCTCCAAATCCTTGAGCTCCAGGTCTCCAAGGTGGGCGAGAAGACGGTGGCGGTGAGCATACGTTGCGCGAAGACGAGGGGCGCCATGGCGAAGGTGTGCCACGCGGTGGAGTCGCTCTACCTCAAGGTCGTCTCCGCCAGCGTCGCCGCCGTCGACGGCACCATCGTCCACACCATGTTCGTGGAGGTACCAAACAAAATAACATGTCACATTTTTCACTACCCTGATCCCCTCTCTATCATTATGTCCTCCACATTCATGCTGTTACCAATCTCTGAGTGGTCCACTTTGCCACTTATCCTTTCACACGGTTGCAATTGTTGCACGTGTTACTGTGCTGACGTCACCGGGATGACGTCACGAGAGTGA
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| Protein seq | MDGFGGGMYGPAAAPATPAMVEKEYDESLSELYAYTSQSRYADSSSPDVVNLCSTAVASAAAAASSKNIAMERDRRKRLNEKLFALRAVVPKITKMDKASIVRDAIAHIEKLQEEERQLLDEISVLQSAAAVAATAVEDVDDSGVTMPSMKKLRSTPPLDGGGGALRVASSPPLQILELQVSKVGEKTVAVSIRCAKTRGAMAKVCHAVESLYLKVVSASVAAVDGTIVHTMFVEVPNKITCHIFHYPDPLSIIMSSTFMLLPISEWSTLPLILSHGCNCCTCYCADVTGMTSRE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0300600 | OsNip_04t0300600-01 | Chr04 | 13396868 | 13401252 | - | IsoSeq | ||
| CDS seq | ATGGTTGCAATCTTGCATTGGCATCTGAATATAATTTCTTTTATCATCATTTTCGCTCGTTATGGGAGTTCAGCCGCAGGCGGCCCACTTCAATGTTCCAGTAATATTACAGCAGTTTTAGAT |
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| Protein seq | MVAILHWHLNIISFIIIFARYGSSAAGGPLQCSSNITAVLD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.730536 | 1.014148 | 5.182497 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0301500 | RBH | 0.373723 | 0.0 | 0.371247 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g23440 | RBH | 0.000000 | 0.299073 | 0.716104 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0300600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007080 | RBH | 0.280807 | 0.0 | 1.491513 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007710 | RBH | 0.000000 | 0.0 | 1.049758 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007450 | RBH | 0.258662 | 0.0 | 0.593277 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007170 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007320 | RBH | 1.801649 | 0.000000 | 7.688598 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0215800 | RBH | 3.902449 | 1.004567 | 0.3617875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007080 | RBH | 0.426962 | 0.000000 | 0.299484 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0218000 | RBH | 7.776496 | 8.781774 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006900 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007180 | RBH | 0.330165 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007260 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007090 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007390 | RBH | 0.156250 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007080 | RBH | 0.741761 | 0.000000 | 1.516444 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007150 | RBH | 0.268730 | 0.000000 | 2.688541 |
