Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0293700 | OGI:01022060 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:12875227-12882818 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAAAGAAGGGCTCTCTAGCTCTCATGAAAAAAACCCCCAAGTCCCAATCCATCTTTTTCCTTCCCGCGATTTTCTGGCATTCCCCCCAAAATCATCGACCCCCATTATCCCATCTCTCCCACTCCCCATGTTTGCCGGTCTAATTGTGATTTCCTCATCTGATTGGAGAGATTTATTTGCCCCTCCGTGAGTTTGTAGCACCCAATTTTCTTCATTTGTTTTCTTCCTCGCATGATCGCTAACAATCCCCTGCCGCGCGCTTGCCTCGACGCAGGTTGGCACCCCCGTCGCACTCCGAGCCATCAGGTGCGGCACCTCCTGTAGCCCGGTGCCTGACACCCAGGCCCAGCACTCCTACCTCGTCGGAGTGTGCCGCTCTGCCGTGCCCCGATCCTTCCTCCTCAGGTAACATCTTGATTAATGTGTGCCTACCAGCTGCTCGATGGAATTCCCCTGTAAGAATTTTGTCATGTCCTGTGATTTTCATCTTTTGTGATTGTATCCCATGAGCATCTCAACTAATGATTTTGAAAGAATGTTCATCATCCTTTTGGTTTCTTCTACTCTCCTTGCTCCAGGATGTTGGATATTGGATTAATTTGTTTATGGTTTAAGTAATACACACTAAAATTTGCTCTCTAACTTGCACATGTATGACTCAAGTTCCTGACGATGCTTGTGTTTCTAATTCTTTAGTTGCTCGCTACTAGATATTTTTATTGCCCAAAAATTACGAGTATCTCTAGTAGATATATATTCTATCATCAGTTCTTCGGATTAGAATATACAGGTAGGAATTATTAACATAGTTTAATTTATGATTGGTACTGATCTCAGGATTGTTTTAAGTGGTTAGAAAATTCAGGTCTCCTGAAAGTACGGTGGAATTTGAATGTTAATAATTGTGCAATCTCAGGATTGCTTTAAGTGGTTAGAAAATTCAGGTCTTCTGAAAGTACGATGGAATTTGAGTGTTAATAATTGTGCAATCTGATAGCAAACCATTGGCATGTGTGCAAAAATTCAGTAAATTAAACAAGCTAAGACACATGTTGTTTATTCTTTTGGTGTATTGAAGTGTAGACAGAGTAAACAAATTATAGAGAAATATGTACTACTTAATATGTTCAAGTTATCACTAATAATGATTTATCTGGGAGCAATTATTTTTTGTATTTAAAAGAAGATTTGCTATTAGTCTACATCTAATCTTTCCTCTTCTTATTTTGATAAACTTCCTTTACATAATCTTTCAAAATATGCATCCTTACCATATAATTTCAAGTGTAGGGCTAGCCATTATTTGCATGTCAGAATAGCTTGTTTAGTGTGAGATTAATGGCTGAGGACCGTAGTTGGATGTATAAAAGGGTAGTGAATGGATACATTTCAGATGAGTATTTGAAAGGAGTTAAGAGGTTTATGTCACACGCTGTATCAAAGTTACAAGGTCAGGCAGAGAAAAGGGTTAGATGCCCTTGTACGAAGTGCAAGAATGGGCAGCTGCATGACAAAAGAATAGTTCAAATGCACCTTTGCAATAAAGGATTTACTGAAAATTACCATGTGTGGAGTAGACATGGTGAAAGTGGAGCTGATACCAGTGAGACACCAGAAGGCAGTATTGACAATGAGATGAATAAAGGAGGTAATGCCTATGGAGAGTCAGATCATATAGATGAGATGGTGTTGGATGCCGCAGGGCCTAATTTTTGTCAAAATATTGAAGAGCCTCCAAATGCTGAAGCAGCTTCATTTTTTGATATGTTAGATGCAGCAGACAAGCCATTGTGGGAGAAGTGTGGAAAACACTCTCAATTATCTGCAGTCTCTCGGTTGTTGACAATAAAATCAGACCATAATATGTCTGTAGCTTGCTTTGATGAGCTGGTCAAGGTTATGAAAGAAATGTTGCCTCCAGATGCAAATTTGCCAGGTAGTTTTTACAAATGCAAGAAAGTCGTCGAAGCTTTAGGTATGCCTGTCCAAAAGATTGATGTTTGTAAGAATGATTGCATGTTATACTATAAGGAGCATGCTAACAAAAGGAAATGTATAACATGTAATGAGCCTCGTTATATTGAAGGGTTAGAACTCCCTGAGAATAAGAAGGGCACTCCACAGAAGGTGCTTCGCTACCTCCCAATCATTCCACGCCTACAGAGGCTCTACATGTCACGAGGCACTGCAACACACATGACATACCACAAGGATGGGCTTGAATCAGAGAGGTGCAACAATGAAAGCAGAAAGAAAAAGTTAACTCACCCAGCAGAGAGTGAAGCATGGAAGCATATTGATTCAAAGTACCCTAATTTTGCAAAGGAGCCTCGAAATGTGCGTTTAGGGTTGTCAACAGATGGATTCACGCCATTTAATCAAACTGCAACCCCTTACTCCTGTTGGCCTGTTTTGTTGTCCCATATAACTTGCCCCCAATTTTTTTGAATGCACATTATATTATCCTTACCANGGTTATACCACNGCCTACNCACCCTNCNNNGAACATATANNTATTCTTCCATCCACTAATNGATGAACTTTTGCNACTTTGGAGAGAAGGAGTTGTGACATATGATCGCTCAAAAAACCAGAACTTTGTCATGCGAGCTGCCCTTATGGGGACAGTAAGTGACTTTCCTGCATATGGGATGTTGTGCGGCTGGAGCACACACGGTTAATTAGCTTGTCCAATTTGCATGGAAGACACAAAGTCATTTTGGCTAAAAGTTGGAGGCAAGCCATGTTGGTTTGATTGTCATAGGCGTTTCCTACCAAAGGGACACCCTTTTAGACATGCAAAAGACAAGTTCATCCAGAATAAGGAGGACAAAGATGGCCCACCTATTCATCGATCATCTTCAGAAGGGTATGATTGTGTTAAATCTCTCCCTCAAATTACATTTGGTACCAAGGCAGGAAATCAAGAGATTGAGGGTTTTGGAAAGGAGCATAATTGGGTAAAAAGATCTATCTTTTGGGAGTTGCCTTACTGGCGCGAGTTGTTAGTACGGCACAACCTTGATGTGATGCACATTGAAAAGAATGTGTTTGACAATATATGGAATACTTTGATGGATATCCCAAAGAAGACTAAAGATAATGTCAAGGCTCAATTTGATTTAGCCAATATATGCAATCGCAAAGAACTTCATATGCAACAAAAATCTATAGGTCGATGGGTGAAACCAAAAGCTTGTTATAGTCTAGATAAGGCACAGAAGAAATTGGTACTGCAATGGGTTAAGAATCTTAAATTCCCTGATGGTTATGCATCAAATTTAGCACAGGGTGTTGATATTAATCGAGGCAAGATCATAGGAATGAAGAGTCATGATTGCCATGTCTTCATGGAAAGGTTGCTACCTGTGGCATTTCGTGATTTCCTCCCCAAGCACATCTGGAAGTGTTTAGCAGAACTGAGCTACTTCTTTAGGCAACTATGTGCAAAAGAGGTGGATATAGAACAAATGAAGCACCTACAAAAGGAAGTGCCAGTCATTGTGTGAAACTTGAACAGATTTTTCCTCCTGGATTTTTTGATTGTATGGAACACTTGGTGGTGCTCTGAGCTTATGAAGCTTTAATTGGAGGGCCTGTAGCTTTGCTCTGGATGTATGTATTTGAAAGGTATGTTTCTTTGGTTAAGTACTAAAGTGTGAATTTGTATATTAATTTCATAATTATGTTTTCTGCTCAATTCATAGGGAGTTACATGAGGCTCGCAAGAAGGTTCGAAACAAAGCACGTGTCGAAGGTTCAATTGTAGAGGGGTATAGAGTACAGGAGGTCTCTAATTTTATTTCTATGTACTTTGCTGATCATGTGCGAACAAAGCACACTCGCGTCCCTAGACATGATGATGGTGGTTTCAGAGCACCTACTGACTGGCTGTCTATATTCTCTATCCCATATCGCACTCTTGGAAAGAGCACATCATGTAACTTATCAAGAGAAGAATGGCAGGCTGCTAGGGTATATGCATTACTCAATTGTGCAGAAGTTGACAAATATGTCTTGTAAGTATATATTATTCTGTTTTCCTATTTTATTACTTGGGCTCTATTTTTGTGAATATGACATATTACATTTATGTTATTGCAATAAATGTCAGGAAATTTGATAGGGGGATGAAACAACAAAACAGGAACATCACTACAACTCAATTACAAGAGATGCATGAGAAAGATTTTCCAACCTGGGTTCGTGAGTTGGTAAGAATACATGATGTAATATCTGATGGATTATTATTTATTTTAATGCATGATTCATGAAAATTGATTCTACAGGCTGGAAAAGATGAAACAGTTGAAGAACAAGTAAGGGCTCTTTCCATTGGGCCCCGATACATGGTTAAGTGTTATAAGGGATGTGATGTTCAGGGGTTTCGTTTTCGTACACAACCATATGAACAAAAGAAATCATCGAGGACAATGACAAATAGTGGAGTTTGTGTGTCAGCAAATTGGTTTGATAACCAAGGGCCTGACTACTATGGCACTATTCAGGAGATAATAGAGTTGGAATATGTCAGTGATAGTGATCTAAAGGTGGCTCTATTTAAGTGTGTCTGGTTTGATCCTAAGAAAGGAGTGAAGTATGACAAAGCACTAGGCCTAGTTGAAGTTAACCATACATCAAGATTGGAACAATATGAGCCTTTTGTGCTTGCATCCCAAGTGGAACCAAGTATATTATACACCATATCCATCGCCACCACGTGAAAGAAAAGATTGGTGGGTTGCATTCAAGACAAATCCAATTGGTACTTTACCCGTTCCTGCAGTGGACGATGAAGTTGATGATTCGCTTCCTCCTGTAGTTTCTGAATATTATCAAGAGGGAGAGCAGCTTGGAGCTGACATTTCACAGGAGCTTGGTGATGAAAGCTTGCTTCATGAATCAAATATTGTTGAGCAAGTTGATCCAGAAGATATGGATTTTTTAAATAGACCAAATAGCCATGAGAACATAGAGAGTTATGTTGCCATGGACAGTGATTGCAGCAGTGAAGATGAAGGGCCAATAGAATCAGATAATGACTCAGACAATGATAGTGATTCTAGTGACTAAACAATTGATATATATATGTGTGTGTGTGTGTGTGTGTGATATTATTATTTCATTTTCTCATGAGCAGTGGCATTATTACAAATTTACTATGTTATCTATTCTTCAATGACTACATTTGCTTGCAAAATAACCCTTGTTTTTACTAGTTAAGTACTATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAAATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTCAATAAAGAGTAAGTTGACACTCTAAATTTCTGCTTATATTAAAACACACACTGTCTATCACACACACAAACACACACTCCATATAATATGTATATCATTGTTGTTAATAATTGAAAATCTTGTTGTAAACTCCATGTTAAATTTTAAGAAATACAGATGCATAGTTCCTATAAATCCAATATTATGATGGCTGAACATATTTTTTTATCACTTTCATTGTTTTACACTAATATTACCTAACTTGGTAAATGGCATGTTGTTTCTAGTGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAAGCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTTCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGGTGAGTTACAGTGTTAGCATTCACATAGAATATTTAGGTTCTTTTAATGGATTGACGTCCTACCTTATCCTTTTACAGCTGTGTTTTAAGTTTGCTGATGGTAGAGAAGAGGATTGTGCTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAGAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGAACCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAGGTGTCAGCTCAAAACAGCAAAAATCGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAGTGTTGCTATGCATAAACAAGCCATGGTACCAAAGTTAAATGATTTTCCTATTATGATTTATACTACTTTGACTTCTCACTATGATATGTACTTTTGGATAGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAATAGTTAGCGGTATGTGTTCTGCTTATTCTAGTTCCTAGTTTCAAGTTTGGCAATCAAAAAAAGTGAAATCATCTAAAACCATGCAATGGTGCCACTACATATCTTAATTAGGTGGTGTATAATGATCGTGTCAAGGAAGGAGAAAACAATCAAGTCAACAAACAACATGTTTGGGTGCAGCTCACTAAAGGTAGAAAACGTGGAAGGTATTATGGTCTTTCAGGAATTATAGATAGAAACCATGTTGGTAATTCAGCAAGTGCACCATCTGGTAGCATGGAGACACAGCCACTATACACACAGCAGCAAGTGCAAGACATTGTTCAGCAGGCAGTCACTAATGCTGTGAACAATGCTCATCAAGAACTAGCATCAAGGATAGAAAGGCTAGAGCAGACAGTGGATAAGGATAAGGCAGAAACTCATTCCCATGTAAGTATAAATTAAAGCTATTTTTGTTACCTAGAAAGAACATACTAACTGGTATTATTTTTCAAATCACAGGATGCAAATGGACCATCTTCTTCTGTTGTCCCTGAGTTCCTTCATGCACTTCTCATGGTATATACTGACTTCAATCTTTTTACTACTGTACATCCTTATTATTTATTCTCTTGAACAAACATTATGAAAAATTTGGTTCTTGGACAACAATAGATCAATTTAAAAATGTTCTGCCAATGGTATGGCTTTAGTTGCGATACCAGTTAGTGAGTTCAATTTAGAAATGGACTGCTATGTATCATTCATAAGTTCAAACTTAGACCTACCCTTATAGTTTTTCAGTAACTTTGTAGCTTATTTTGTAATTTTATTTCAGAATGGGATGAACACTACTGAAGAAGCGCCACAAGCTGGTCATTGTGGAAGAACTTGTGAGAATGATGACCTCTGGCGTTTCTAGGATGTGCTAATGTCGAATTGCAAGCATTTAGAGATTAGGAATCTAGGATCATGTTATCAGACCTATTATAGTTGCTAGATTAATCAGTTTGATCAACTTACCTTCTGAGACTATTTTATTTATGTGTTATTGTCTACAGACCTGTCTTAGATTAAATGCAAATATATTGTCTAC
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| CDS seq | ATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAAATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTCAATAAAGATGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAAGCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTTCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGCTGTGTTTTAAGTTTGCTGATGGTAGAGAAGAGGATTGTGCTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAGAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGAACCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAGGTGTCAGCTCAAAACAGCAAAAATCGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAGTGTTGCTATGCATAAACAAGCCATGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAATAG
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| Protein seq | MSRRHRHYPDPEVEDHFEDSTQDEPSNSLVTSTKESKGGRGPNVLMAPVPEKDRAVITPLNKDAWITNPMKKNVSSTITCLIKAHYPGTYRPLDKHGKQVPEDEAVVIAHYHNFSAHTRITILKEFLLCFKFADGREEDCARLFYRKAVERFSQALSHEKSEAKRSLEKHIENMRATELQQDGDAPSHDDFDVDEPQLWKAFPPYWIEQKWWDMLCDLWSDENVKKVSAQNSKNRMEGGGVHHTCGSRSVAMHKQAMIIENAGTDVDDIDVFERTHRHAKGKGQYANKKAE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0293700 | OsNip_04t0293700-01 | Chr04 | 12875227 | 12882818 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCAAGACGCCATCGACATTATCCGGATCCTGAAGTTGAAGACCATTTTGAGGATTCAACACAAGATGAACCTTCAAATTCTTTGGTTACTTCAACAAAAGAAAGTAAGGGTGGTCGTGGTCCAAATGTTTTGATGGCACCAGTTCCAGAGAAAGATAGGGCAGTGATAACTCCACTCAATAAAGATGCTTGGATTACGAATCCTATGAAGAAGAATGTTTCATCTACCATCACATGTCTTATAAAAGCTCACTACCCTGGCACATATAGACCTTTGGATAAACATGGCAAACAGGTGCCTGAGGATGAAGCAGTTGTCATTGCTCATTATCACAACTTTTCTGCTCATACAAGGATAACTATTCTGAAGGAATTTTTGCTGTGTTTTAAGTTTGCTGATGGTAGAGAAGAGGATTGTGCTAGATTATTTTATCGCAAAGCTGTTGAACGTTTTAGCCAAGCTTTGTCACATGAGAAATCTGAAGCAAAACGTTCTTTGGAGAAGCATATCGAAAATATGCGTGCGACTGAGTTACAACAGGATGGAGATGCCCCTTCTCATGATGATTTTGATGTTGATGAACCTCAACTTTGGAAGGCATTCCCTCCTTATTGGATTGAGCAAAAGTGGTGGGATATGTTGTGTGACTTGTGGTCTGATGAAAATGTAAAGAAGGTGTCAGCTCAAAACAGCAAAAATCGGATGGAAGGAGGTGGTGTTCATCATACTTGTGGTTCACGAAGTGTTGCTATGCATAAACAAGCCATGATAATTGAGAATGCAGGGACGGATGTTGATGATATTGATGTCTTTGAACGCACACATCGACATGCAAAGGGCAAGGGACAGTATGCCAACAAGAAAGCTGAATAG
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| Protein seq | MSRRHRHYPDPEVEDHFEDSTQDEPSNSLVTSTKESKGGRGPNVLMAPVPEKDRAVITPLNKDAWITNPMKKNVSSTITCLIKAHYPGTYRPLDKHGKQVPEDEAVVIAHYHNFSAHTRITILKEFLLCFKFADGREEDCARLFYRKAVERFSQALSHEKSEAKRSLEKHIENMRATELQQDGDAPSHDDFDVDEPQLWKAFPPYWIEQKWWDMLCDLWSDENVKKVSAQNSKNRMEGGGVHHTCGSRSVAMHKQAMIIENAGTDVDDIDVFERTHRHAKGKGQYANKKAE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.643066 | 1.539901 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0392500 | RBH | 0.000000 | 0.0 | 0.324302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g22720 | RBH | 0.000000 | 0.432516 | 0.396400 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0293700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026070 | RBH | 0.781169 | 6.848181 | 3.513747 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007370 | RBH | 0.0 | 0.0 | 0.209891 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007140 | RBH | 0.0 | 0.0 | 0.905333 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0006790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026570 | RBH | 0.819121 | 4.771207 | 6.679847 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0497300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012880 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0317400 | SBH | 0 | 0 | 0.298007 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013440 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012980 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008750 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013320 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026280 | RBH | 0.201133 | 6.614352 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025540 | RBH | 0.122679 | 0.825518 | 1.041206 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025430 | RBH | 2.247352 | 6.007001 | 5.003170 |
