Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0206200 | OGI:04020690 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:7136754-7140421 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATCATAAAATAATATAGCAAATGTTCCCAATTATGTTTCTGAATTGTCCTTCCAATAAAAATTTCAAGTGTTGCAGTCCTTCCCAAATCAAATAAGTTTACAAGATCCAAATCAGAGACGTATTGTCATATACATCAGTTATGTTTGCACAAAATTATTTCACCCCATGTAACTAAACAGTGGCAATTAGCAGATCATCGAGACCTCTCTTACAAGCATCAACTCATCTATTATTTGTCAAGACAAAGCCAAGCTCATAATCCACATCAGGTTATCCTCCAGATATCATCGAACACTTGGTGTAAACAATATGATATTCTAGATATCATCGAACACTTGGTGCAAACAATATGATACTCCAGCCATGCTCCGTAGTCCTCCAGAAACAACCAGGTTCAATAGTCCAGTGAAAAAAAAAAAATAAAGAACAGGGCCAGCAGAAGAATCTGAACATAGTACTCTCAATGCAACCACATTCTACCTGCACAAATAATATTAAGTACTCAATCAGAAAATAATATTTGGCAAGATTATTTGAAATACTCTTGTGCATCAGTACATCAGGTTTTCCTCCATATCAATGAACACTTGGTGTAAACAATATGATACTCACCATCCATGCAACCTGGTCCTCCAGAAACAACCAAGCTCAACAGTCCAATGAATAATATAAAGAACTGGGCCTTCAGAAGAATCTGAACATGGTACTCTCTAATCAACCTTAGACAATCTGCAGATATAATATTAATTACTCAATCAAAATGTAATATTTGGCAAAATTAATTGAAATACCATTAAGTGACAGGAGCAAGTTTTAAAACATTAATAGCAAGTGACAGGTGCACAATTAAATCATTAGATGAGTGAACCTTCAATTTCAGGAAAGTAGAAAGTCATGTCGACATGAATATAAAGAATCTCATACCTGTTCAGAATAAAACATCTCGATATACAATGTTCTTTGTGCTTTTTCCAGTGGGGTCAATGTCTATCCTTGGCTTGGCCAAAATTCTGGTTGTTCCCCTCGAGACACCCCTAGAGAGTGCAACGTAGAGTTGACCATGAGAGAAAACAGGTTCAGGGAGATAGATTGCCACATTTGGGATTGTCTGTCCTTGAGCTTTGTTGATAGTCATTGCAAAACTAAGACGGATGGAAAACTGCTTCCGCTTGAACTTAAAAGGCAATGAAAGATCCTCCGAGGGGTATAATGGAATCCGTGGTATGAAGACCCTCTTCCCAGCATGTGCACCACTGACAATCTCAGCACTAATGGAATAATTCTGAAATGCTCTAATCATAAGCCTAGTTCCATTGCACAACCCGTTGTGCGGGTCGAGATTGCGCAGCAATATGACAAGACAATTAAATTTGACCTTTAAAAGATGTGGCAATCCATTTGGTGTGAGTGAATTCAGGTACTCAAATTTATAGAAATTGGGCAAAACGTGGAATATTTTGTTTCATTAACCTAATTTACAAATCGCTCCTGAAAATGAAGAACAACATTACCTAGTGCATTTTGCATAAGTGGCCATTAACATTTAAAGCTTATACATATTATATTTGAAGGTTGATTTTCGTTTATAGCGTTTGCTCATTCTGACGATGTTATTTAGTATACACACATCAACTTCACTATAGAACAAATAATGGTTTTAAGCTGTACCTTTCTCAGCTCTTCAGAAGATCGATTGCAAGACCTTCTTTCCTTGAAATGATAACGGTATGAAGTTAAAACTTAAAACCAGCAATGAATTCTTCACAGGGTACACAATTTTCAGTCATCAAATCCATTCCATATGCGCCAACTACCATTCTGAATTCCTGATACTTCCATTACACATGTTTAATTCTTAGCTTTGCTTTAGTTCTATCCACTTGAAAACTTATACTATCTTGTTCTGCTACCAACCACCCGAGGAAGCTCTACCATATATACAAAATTGAAATGTTAGTTCTCACAGCCATCCATTAATGGAACCCATCTACAGTCACACAAAAATATATAGCTCTAAAGTAGTAGGACCAGTGAAGTAGTAAGCCACACAGAAGTATCATGTTTACCGCATACCTTATTCTTGTCCATTTGCATTTCTTAAGTGCAAAAGCTTTCAGAAATGATGTCCAATACTAAATCATGTTTTCCTGTTTATTGGATTTTCTTTTGTGCTCCAATTGGCTAAGAAGCAATGTCACCTGAAATGACAAACACTAAATCAGACTATATATGGCCCAATAGAAGTACAGAATAAATATATTTAGATAAAAGAAAATATGAAAAAGAAATTAGTCAACAACAATTGGCAGCAAATGAGTGAACTTATCAACCGTGCAGTGAATCAAATGAAAGACCATAAGGGACGACAATCCAGTAATTGTTGATGATCACAGAAATAAAAAAGAAAAATAAGAGGCAGGCAGCCCAACAGCAACAAACGGGCTTGATATGGCTATTTACCCTGTCATTGCAGAAAATTGCAGTGTAGGGTTTCGTGCATTTTCCATTTCAGTAAGAAAGGAACTGTTATTTTTCGACTAAATAAAAAAGATAAGAGACTAGGCATGGTTGAATTTGCTCTCTGTAAGACAATCTGCAAGATATTCAACATGACAACTATAATGTTAGTATGTATGAAACTGCAGCACCAATCACGTAATATATAGCCTGCAATTATCCACAAAGGTAAAGAAGAACCGAATAACATAACTAAAAGGAGATGCATACCATTAAGCTTGAATAAGAAAATTCAGCTAGAGAACTAATGGGGAAAATTCACAAAGAGGAAAAATGGGGATTGAAAAGAGTCGATTTGAGTTGAATCAGGTATCACCAACATAAGAGAGGGAGGCACACGGCTGGGAGGCCTAGCTGCTGAGTCTATCCCCTTCCAATGGCGGCAACACTAGAGGACTCACAGAGCAGCGACAAAGATGGAGGCTCAGTGTCGGCGGAAGGCTTGACCACCGTGGCTCGACGGGGTGGCATCGCCAGCGGAGCCCTGGACCACTGAGGCACCGATTGCAGGGCGACGACGGAGCTGCGACGCTGGTGGGAGTATGCACAACCAGGGCGAGACGGGGTAGCGGCACTGGTGGAAACCCTGGACCACCAGGATACTGATTGCGGTGACGACGGCGGCGGAAGTGCGGATGATGACGGATGGTGCAGCAGCGTTCAAAGGCGCGGCGACGGCGTTATCATGATTAGGGGAGCCACCGCGGGATTAGCGCGATGGAGCCTTGGTGGTCCACGCGTGGGGAATTTTGTGAGTTGCCATGGCGCGATTTGTGTGGCCGATGGGGAAGACCGCGGCTCCGGCTGTGGAAGGGGACGATGGCAACGTATGGGCGGCGGCGTCCGGGCAGCGGTGGAAGGGTACGACGGCGGCGTCTGGGCGGCGGCGGAAGGGGACGACGGCGGCGTGCGCCACGCGAGGAGGAGTGAGGAGGCGAGGAGGAGGAGAGGGGGAGCGAAGCAAGGGGACGACGGCGGAGCGGCGCCACGCAGGGAGGAGCGAGGAGGCGAGGAGGACCGAGGCGGAGTGGAGGTAGCAGCGACGACGCTTGGGAGAGAGCGTCGGATATGAGGATTTGTCGTTGTGGCGATGATGCGCGACGGATTGAATGCGGCGGAGGCGAGGTGCGCGGCAGAGATGGCGCATGC
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| CDS seq | AACAAAATATTCCACGTTTTGCCCAATTTCTATAAATTTGAGTACCTGAATTCACTCACACCAAATGGATTGCCACATCTTTTAAAGGTCAAATTTAATTGTCTTGTCATATTGCTGCGCAATCTCGACCCGCACAACGGGTTGTGCAATGGAACTAGGCTTATGATTAGAGCATTTCAGAATTATTCCATTAGTGCTGAGATTGTCAGTGGTGCACATGCTGGGAAGAGGGTCTTCATACCACGGATTCCATTATACCCCTCGGAGGATCTTTCATTGCCTTTTAAGTTCAAGCGGAAGCAGTTTTCCATCCGTCTTAGTTTTGCAATGACTATCAACAAAGCTCAAGGACAGACAATCCCAAATGTGGCAATCTATCTCCCTGAACCTGTTTTCTCTCATGGTCAACTCTACGTTGCACTCTCTAGGGGTGTCTCGAGGGGAACAACCAGAATTTTGGCCAAGCCAAGGATAGACATTGACCCCACTGGAAAAAGCACAAAGAACATTGTATATCGAGATGTTTTATTCTGA
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| Protein seq | NKIFHVLPNFYKFEYLNSLTPNGLPHLLKVKFNCLVILLRNLDPHNGLCNGTRLMIRAFQNYSISAEIVSGAHAGKRVFIPRIPLYPSEDLSLPFKFKRKQFSIRLSFAMTINKAQGQTIPNVAIYLPEPVFSHGQLYVALSRGVSRGTTRILAKPRIDIDPTGKSTKNIVYRDVLF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0206200 | OsNip_04t0206200-01 | Chr04 | 7136795 | 7140421 | - | RAP2018-11-26 | ||
| CDS seq | AACAAAATATTCCACGTTTTGCCCAATTTCTATAAATTTGAGTACCTGAATTCACTCACACCAAATGGATTGCCACATCTTTTAAAGGTCAAATTTAATTGTCTTGTCATATTGCTGCGCAATCTCGACCCGCACAACGGGTTGTGCAATGGAACTAGGCTTATGATTAGAGCATTTCAGAATTATTCCATTAGTGCTGAGATTGTCAGTGGTGCACATGCTGGGAAGAGGGTCTTCATACCACGGATTCCATTATACCCCTCGGAGGATCTTTCATTGCCTTTTAAGTTCAAGCGGAAGCAGTTTTCCATCCGTCTTAGTTTTGCAATGACTATCAACAAAGCTCAAGGACAGACAATCCCAAATGTGGCAATCTATCTCCCTGAACCTGTTTTCTCTCATGGTCAACTCTACGTTGCACTCTCTAGGGGTGTCTCGAGGGGAACAACCAGAATTTTGGCCAAGCCAAGGATAGACATTGACCCCACTGGAAAAAGCACAAAGAACATTGTATATCGAGATGTTTTATTCTGA
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| Protein seq | NKIFHVLPNFYKFEYLNSLTPNGLPHLLKVKFNCLVILLRNLDPHNGLCNGTRLMIRAFQNYSISAEIVSGAHAGKRVFIPRIPLYPSEDLSLPFKFKRKQFSIRLSFAMTINKAQGQTIPNVAIYLPEPVFSHGQLYVALSRGVSRGTTRILAKPRIDIDPTGKSTKNIVYRDVLF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0206200 | OsNip_04t0206200-02 | Chr04 | 7136806 | 7140342 | - | RAP2018-11-26 | ||
| CDS seq | AACAAAATATTCCACGTTTTGCCCAATTTCTATAAATTTGAGTACCTGAATTCACTCACACCAAATGGATTGCCACATCTTTTAAAGGTCAAATTTAATTGTCTTGTCATATTGCTGCGCAATCTCGACCCGCACAACGGGTTGTGCAATGGAACTAGGCTTATGATTAGAGCATTTCAGAATTATTCCATTAGTGCTGAGATTGTCAGTGGTGCACATGCTGGGAAGAGGGTCTTCATACCACGGATTCCATTATACCCCTCGGAGGATCTTTCATTGCCTTTTAAGTTCAAGCGGAAGCAGTTTTCCATCCGTCTTAGTTTTGCAATGACTATCAACAAAGCTCAAGGACAGACAATCCCAAATGTGGCAATCTATCTCCCTGAACCTGTTTTCTCTCATGGTCAACTCTACGTTGCACTCTCTAGGGGTGTCTCGAGGGGAACAACCAGAATTTTGGCCAAGCCAAGGATAGACATTGACCCCACTGGAAAAAGCACAAAGAACATTGTATATCGAGATGTTTTATTCTGA
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| Protein seq | NKIFHVLPNFYKFEYLNSLTPNGLPHLLKVKFNCLVILLRNLDPHNGLCNGTRLMIRAFQNYSISAEIVSGAHAGKRVFIPRIPLYPSEDLSLPFKFKRKQFSIRLSFAMTINKAQGQTIPNVAIYLPEPVFSHGQLYVALSRGVSRGTTRILAKPRIDIDPTGKSTKNIVYRDVLF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0206200 | OsNip_04t0206200-03 | Chr04 | 7136754 | 7140398 | - | IsoSeq | ||
| CDS seq | CTCGCCTCCGCCGCATTCAATCCGTCGCGCATCATCGCCACAACGACAAATCCTCATATCCGACGCTCTCTCCCAAGCGTCGTCGCTGCTACCTCCACTCCGCCTCGGTCCTCCTCGCCTCCTCGCTCCTCCCTGCGTGGCGCCGCTCCGCCGTCGTCCCCTTGCTTCGCTCCCCCTCTCCTCCTCCTCGCCTCCTCACTCCTCCTCGCGTGGCGCACGCCGCCGTCGTCCCCTTCCGCCGCCGCCCAGACGCCGCCGTCGTACCCTTCCACCGCTGCCCGGACGCCGCCGCCCATACGTTGCCATCGTCCCCTTCCACAGCCGGAGCCGCGGTCTTCCCCATCGGCCACACAAATCGCGCCATGGCAACTCACAAAATTCCCCACGCGTGGACCACCAAGGCTCCATCGCGCTAATCCCGCGGTGGCTCCCCTAATCATGATAACGCCGTCGCCGCGC
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| Protein seq | LASAAFNPSRIIATTTNPHIRRSLPSVVAATSTPPRSSSPPRSSLRGAAPPSSPCFAPPLLLLASSLLLAWRTPPSSPSAAAQTPPSYPSTAARTPPPIRCHRPLPQPEPRSSPSATQIAPWQLTKFPTRGPPRLHRANPAVAPLIMITPSPR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.796856 | 10.613226 | 3.361855 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0423850 | RBH | 13.053836 | 13.244347 | 4.488286 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g11850 | RBH | 0.469924 | 0.021757 | 0.032724 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0206200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0291500 | SBH | 10.8665775 | 18.4632615 | 44.674049 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0110400 | RBH | 10.88116 | 12.7750885 | 9.3732485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
