Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0170500 | OGI:04019130 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:4816682-4822779 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGACAAAAGGCCCAGGGCCCGGCTTTTTAAAGAAAGCCAAATACGGCATCTTCCTGCTGGGGTTGCCAGCAAACATTTTTGTATCCTCCACGCAGGGAGGCAGAAACAGGGAAACAAAGTTCACAATTAAAACATCCAAGAGACTGGGCAGATAAACAACAAGAAACTCTAAGTAAGCTACAGGAGACAAGCAACCCCAAAAACCAACTCTTCGGAAACCAAACAGAAAACAGCAGCTTCCCAGGGACTTCTAGTATCAGCCCACACCCGTCCTGGAAGGTCTAAGAGTCGCCACCATCCGCTTCATCTCCTCCGCTAGTGTTTCCAGTTTAGTTGCCTCCCCAGGACGACAAAGCTTCTTCCACTGCACAAGATTAGAAGTTATTTGAAAAAGGATAGCAAGGGGGGAATACACCAACTTGTCCCTGAAAATCATATTATTCCTAGTAATCCAAAGATTCCAACAAACAGCAGCTAAAAGACTCAGGGTGATTCTAACAGAGCAAAGATCAGGAGCCCCATCACACATCAAGAAAAACTCATCAGAGTTTCTTGGTATAAAATTCCAGCGCAAAGTGTCTCTACACACGCACCAGACAAATCTAGCCATGGGACAGTTAAAGAGGATGTGATTAGTTGTTTCTAACTCCCCACACAACTGACAAAATTCAGACCCCTCCCAATTCTTCTTTTTTAGCTGTTCAGCAGATTGGATCCTATCTCTAAGAGCTAACGAAAGGAAATGTTTATGTTTCATAGGGCAAGGGCAACCCCACATCTTAGCATTCACATCCCCAATGCCTCTGAAAGTTAGTGCTCTGTAGAGTGATCTGGTAGTGTATTTCTTGTTTGCATTCAGACCCCAATTGAGCTTGTCATGTGTATCAGAGAGAACAATTTGATCAATTATCTCTTTAAGATCATTCCATTCCTCTAATTCCTCAGGACCAAAAGACCTCCTAAAGGATAGGCAGCCTGGGCCCCCCTGACCCACCTGACTAACTAAAATCTCTTGTTGATTACAAACTCTATAGATCGCAGGGAAAAGGGTCATCAGTGGGCAGTTACCAAACCAGGTATCTTTCCAGAATTTGACACTCAGCCCATTCCCAATACTCCATTCTGCCCCCAGCATCATCCATCCTCTGATGTTCAGAAGGCCTCTCCAGAACTGGGAAACATTTCCAATTTTACAGGAAAAGAAACTCTCATTGGTCAAGTATTTTTTCCTCAACAACTCTATGCACAGACTCTTGTCCTCTGAATCCACCTTCATTATCCATTTTGCTAGGAGAGCAATATTCATCTTCCTAGTTTCTGTAAAACCAAGCCCTCCAAAATCCTTTGGGAAAGCCATATCTTCCAATTTGACCATATGGTATTTCCCTCTAAGTTTGTTACTAGCCCAATAGTATCTACCTCTAATTTTATCAAAACTCTGATGGATCCCCTCAGGAAGATGATAAAAACCCATGGCATAAAAGGGGATGGAGGAGAGGCATGCATTAATCTGGACTGCTCTACCAGCATGAGATAAATTGCTTCCCCATTTGGTCAACCTCTTCTCAAGTTTCTGGCCTAGGAAGTCGAAACCCACATTTAGGATCTTATCAGGACTAATAGGAAGCCCCAAGTATTTCATAGGAAAATGACCCACAGGACAGTTCAGCATCTGGGCAACTCTTTCAGTGTCAAGCTCACTCATCCCAATAGAGAAAACCTCACTTTTATGAAAGTTAATCTTTAAACCAGCCATCTCCTCAAAGCAGTATAAGATGAATTTTGTGGTTACAATCTGATGCATATCATTGGCAATGAAAAGGACTGTGTCATCAGCATACTGGAGATGAGTGATCCCCAGGGAAGATATTAGGGACTAAACCACTAAGGACACCTCTCTTCTTAGCACTATCAAACATGGCAGCCAGAGCATCACTCACTAGATTGAAAAGGAGGGGAGAGAGAGGGTCACCCTGTCTAAGTCCTCTAAAAGTTCTAAAAAAGTCAGTCCTCTCCCCATTGATGTTAACACAAACTTTGCCCCCCATAACACAAGATTTAACCCAGCTAATCCACTTTGGAGGAAACCTTTTTTTCTCCATTACTTCAAACAAAAAATCCCATTTTAGTTTATCATATGCCTTCTCAAAATCGATTTTAAGGATAATCCCTTCTAGGTTCTTTATTCTCAACTCATGGAGCACCTCATGAATGATCACACAACCCTCTAAAATGAATCTCCCTGGGATGAAGGCTGTCTGGGTAGGGGAGATAACACCATTGGCAACCTCTGAAAATCTGTTGGTCACCACTTTACTTATGAACTTGAAACAATCATTCAAAACACAGATAGGCCTGAATTGTTTTATGTCAGAAGGGTCATTGTTTTTTGGGATTAAAGAAATAACACCAAAATTCAATCTCTTCAAGTCTAGCTCTTCATTGTGCAACATAAGAAGCATTTCAAAGATATCATTCTGCAAATGGGGCCAAAAAGCTCTATAGAAAGGGATACTAAAACCATCAGGGCCAGGAGCGGTATTTAGCTTTGCCTCTTTGAGGACTTTGTCTAACTCTTCTAATTTAAAGGGTCTGATCAGAACCTCCCTGTCTTTAGGTTTCAGAAAGAACTCTTCTTCCCACACATTGGGGGAGAGGTGGATATTTAGGGAGGGATCAGCTCTAAACAGGGATTTGGAGTAGTTAACAATGTGGTTTTTCAGATTTTCCTTTGATGTTAGTTCAGTGTCACCATCCATCAAAGAAGTGATACTACATCTCTTCTTCCTCTCATTAGCTATCCTATGATAATAGTCAGTGTTTCTGTCTCCCTCTAGAATCCATTGTCCTCCACTTCTATTATGCCAGTAAAGCTCTTCCATCTCATAAAGTTGTTCTAGGTTATTTTCCAAAGCATATCTCTCCTGCCATTCATCAGGTGATAACTCATTTTCCAAAGCTTTAGCCTCTATCATTTCTAATTTCTTCTGCAGAACCTGTTTCCCTCTGACTCTCTCACAGTGTGCATTAATCCCCCAACCCTTCAGAAATCTCCTTAACTCAGCTTGTTTCTTGTTCCAAAACTCCAAAATGTAGGAATCATCTCTTGTTGGCATTTTTTGGGTAACCATCTCTTTAAAATTTTCTGCAGCTAGCCAAGCAGACTCAAATTTAAAATATCTAGATCTCTCAATGTTACCCTCACAGGTATCTAGCAAAATGGGAATATGGTCAGAACCCACTCTCAGAATAGAGGAAAGAACAGAGTTGGGATACTTATTGTCCTAGTCATCAGTTACTAAAATTCTATCTAACACTTCCTGGGTGGGGTTATCTTGTTTGTTAGTCCAAGTAAATCTAGGACCAATTCTGTGTAATTCTCTCAAATCCAAACCAGTAATAAAATTAATGAACATATTCATGCATCTGAGATCTAAATTGCCATTGGATTTCTCACTAGCAAATTAATACATGTTGAAATCTCCACCCAGCAGGACAGGATGTAGTCTGAACTGGATATGCCAGGACAACTCATCAAGGAAACCATTTTTCAAGGTGTTATCAACAGGACCATAGACACAAACTATCTCCCAAACGAAGTTGTCCTTTTTAATCTTCAGGACACAACTAAGAAAAAAAGCACCAACATGGGTCTCAATGGCCTCAGCTAAGTCAGAGTTAACCCCTATAAGAATACCACCTGAAGCACCTCTAGAAGCTTTCCAGCACCAACTAAAATTCTTCCCCCCTTGGAAAGAGTTCAATTCTCTCTCAGTGAACAACTCCTTCTTTGTTTCCTGAAGACACACAATGTCAACCTCTTTATTATTAAGCAACTCTTTTAACTGTCTCTTTCTAGCATGACTACCCATCCCCCTAATGTTCCAAAAAAGCACTTTCATTTTTTCCTGTGATTTCTAAGTCCACCTCTCTTACTAGGCTCAGGATTATCTTCCTCTCTCAAAGTTCTACCATAACTCTTATCATCTGACAACCTCTTATTCTGTCAAGTCAACTCTCTTTAACAGCTGTTCATTATCACTTTTATCAAGTAAAACCTCTCCACTAATCTCCTCTTCTTGTGGATTTTTCTTCCCTAATTCCTTTTTCCAATTCAACTCTGCTAACCTAGCTTGCACCACCTCTTTAGCTTTCAAAGTTTCTATGGTGTTATCTATCTCTTCAGGAGAGCTACCAAGCACTATATTAGAAACTATGGCAATGTTATTTAACTCAGAATTATCTAAGATTTAAAATATAGCAAAAGGGTTAGAAGAAGTATCTGGAAGCTCCAAATTCTTTTTTGAAGTCAGAAATTCAGCTCTCTTTGTTATAGGGACATCAGCCATCTCTCTCTGCCTAAGACTCATCCTGGAGGTCACTGCCGGTTCAGATCTCTTCTCCCTGTGCTTCTTCTTGTGTGAAACCTCCTGAAAACTATCCTCTTCTTCTTTTTCTTCTTCCTCTCTGATTCTCTCAATGTCAGAGTCTGTTGGTATCTGGCACCTCTCATTATCATCATCCAAAAGAAAGCTCTCTAAGACAAGGATATCAGCAGCAAACCCCCCAACATCCTCCTGAGATTGCACCACTGGATCTTGGATTTCTTGGGATTCCTGCAAGTTCTCTTCCTGCCAAAGGACCATGGTGGTACATTCCTTCACCATAGGTATATTGGCACATACCTCTGGAGCCTTCCTCTCTGAAGTGATAATAGATATCTCTGTACCTTCCATCACAGTCAGCAAGGAGTCTTTTTTGGAAGCTAGTTTCTTCATAGTTTTTCCTCCCTGACTTACTTGTGACTTCCCCTTAAAAGCAGGTGGAGCAGAATGAGCACCTAACCTACTCCCCTGTTGGGCTCGTCCATCTGCAGCTTGTCTACCTCTTGGGGTATTTTGTTTAAATTCCTCATCAAGGTTCATGTCCTCTCCTAACCCCTCATCATCTTTATCATCTCTGTCATCCCCTCATCTGGAGGATTCTGTCTGTTTTCATAAGGAAGATATCCTTCAGGTTCCCATCTCACCATATAACCAACTTTGCTGATATACAGGTGGATGGAGAAGTGAAGTTCTCTAGGATCCCTGCAAGCAACTCTCTTATAGGACCATCCCTTCTTAAGCTAGCCCCATCAATAGCTTCAAACTCCCCAACTAGCTCCACAATAGCTTTCACAGATTCTTCAGTCCTAGCAAACTTTTTGGTATTCCAAACACCTTGACCCAAACTGCTACCAGCTCATCTACAGCCTCCTCAGTCATACCAGTCTCAACTACACTTGCTTTGATCACAGATGTTTCGAAATCAAAACTCTTACATGTTGAAATTTTACTTCTCACTTCATCAGATGGGAAGTTGATTAAAAACTCTTTCTCATTAAGTTGTTTCACACGCCAATCCCAATTAAGACCCACAAACAGGTGTTTCAATTCAGCAATGACTTTTGCAACAGATCCAGATCCCAAAAGCACAGTCAAAATACCTCTCACAGGGGCTTTAGCAATCTCATATCAGACAACTCAACATTCAAACTATAGAACCCCTGTCCCGGAATGCCAAAACCACAAAGTTTAACACCCTTTCTCATCATCAAGGGGCATTGGGAAGAAATATGACCTGAGCTATGGCACGAGTAGCAGAGGGAAGGGTTAGGGCGCGCCGCCTGGTGATGGCCCTCACGACCACACTTGAAGCACTTGATCTTAGGAGCTCTTGCCCCCCTCTCTCCATCGGTACCAGGGAGCCCTTGAGGTTTCCATTGAGCACCTTGATTCGCCCTAGGGTTTTGAGCAAGGAGTTGCCGATGCAGTTCCTCCTCCTCGCGAGCTCCGCACGCCCCCCAGTCACCTCCGCCTCGTGCACCCCAATCGCCGCCGCCTTGCTCTGTCGCTCGTCGCTTGTTGGCTTGCCAATCCAGGCGATTGGGAGGACGACGCTCCATCACAACCTGGGCGAAGGTGCGGTGATCACACCTCTTCTCGGGCACCTTCCAAATCCGACGAGCTCCGTCGCCAAAACGCCGGATCTCGTCGTCTCTCGCCGGGAACCCTAGAAGAGGGCGAACCTCACCTCGCTTGATCCAGATCCACTTTTGC
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| CDS seq | CAAAAGTGGATCTGGATCAAGCGAGGTGAGGTTCGCCCTCTTCTAGGGTTCCCGGCGAGAGACGACGAGATCCGGCGTTTTGGCGACGGAGCTCGTCGGATTTGGAAGGTGCCCGAGAAGAGGTGTGATCACCGCACCTTCGCCCAGGTTGTGATGGAGCGTCGTCCTCCCAATCGCCTGGATTGGCAAGCCAACAAGCGACGAGCGACAGAGCAAGGCGGCGGCGATTGGGGTGCACGAGGCGGAGGTGACTGGGGGGCGTGCGGAGCTCGCGAGGAGGAGGAACTGCATCGGCAACTCCTTGCTCAAAACCCTAGGGCGAATCAAGGTGCTCAATGGAAACCTCAAGGGCTCCCTGGTACCGATGGAGAGAGGGGGGCAAGAGCTCCTAAGATCAAGTGCTTCAAGTGTGGTCGTGAGGGCCATCACCAGGCGGCGCGCCCTAACCCTTCCCTCTGCTACTCGTGCCATAGCTCAGTGGAAGAAGCTTTGTCGTCCTGGGGAGGCAACTAA
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| Protein seq | QKWIWIKRGEVRPLLGFPARDDEIRRFGDGARRIWKVPEKRCDHRTFAQVVMERRPPNRLDWQANKRRATEQGGGDWGARGGGDWGACGAREEEELHRQLLAQNPRANQGAQWKPQGLPGTDGERGARAPKIKCFKCGREGHHQAARPNPSLCYSCHSSVEEALSSWGGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0170500 | OsNip_04t0170500-01 | Chr04 | 4816682 | 4822779 | - | RAP2018-11-26 | ||
| CDS seq | CAAAAGTGGATCTGGATCAAGCGAGGTGAGGTTCGCCCTCTTCTAGGGTTCCCGGCGAGAGACGACGAGATCCGGCGTTTTGGCGACGGAGCTCGTCGGATTTGGAAGGTGCCCGAGAAGAGGTGTGATCACCGCACCTTCGCCCAGGTTGTGATGGAGCGTCGTCCTCCCAATCGCCTGGATTGGCAAGCCAACAAGCGACGAGCGACAGAGCAAGGCGGCGGCGATTGGGGTGCACGAGGCGGAGGTGACTGGGGGGCGTGCGGAGCTCGCGAGGAGGAGGAACTGCATCGGCAACTCCTTGCTCAAAACCCTAGGGCGAATCAAGGTGCTCAATGGAAACCTCAAGGGCTCCCTGGTACCGATGGAGAGAGGGGGGCAAGAGCTCCTAAGATCAAGTGCTTCAAGTGTGGTCGTGAGGGCCATCACCAGGCGGCGCGCCCTAACCCTTCCCTCTGCTACTCGTGCCATAGCTCAGTGGAAGAAGCTTTGTCGTCCTGGGGAGGCAACTAA
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| Protein seq | QKWIWIKRGEVRPLLGFPARDDEIRRFGDGARRIWKVPEKRCDHRTFAQVVMERRPPNRLDWQANKRRATEQGGGDWGARGGGDWGACGAREEEELHRQLLAQNPRANQGAQWKPQGLPGTDGERGARAPKIKCFKCGREGHHQAARPNPSLCYSCHSSVEEALSSWGGN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.448065 | 0.748299 | 4.174573 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g08800 | RBH | 1.257166 | 1.105351 | 1.154149 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0170500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002640 | RBH | 1.102931 | 6.469090 | 10.473747 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0003920 | RBH | 0.0 | 0.0 | 0.122450 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002870 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002790 | RBH | 0.0 | 0.0 | 0.837783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0087100 | RBH | 0.005568 | 0.105556 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002940 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0088400 | RBH | 0.012604 | 0.062219 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002760 | RBH | 0.917613 | 6.041672 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002960 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002830 | RBH | 0.0 | 0.0 | 0.0 |
