Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0161400 | OGI:04011550 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:4225748-4226837 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGCGGCGGCGTTTATTGCCGGGGCTGCCACGGCAAGGTATTCAAGTGGACCAAGACATCATTTTCTATATTTCAAAAGGATACAATTCCCGTGCACATACATAGCTTTGTCCCATCTCTCTTCTCTAATGCTCCCTCTAAAACTTTCACTACAGGGGCTTGCAGTTGTCCCGAAGGGTGAAGGAGTTGGAGAGCCAAAACACTACACTATCTAATGAGAAGAATGACCTGGAGAGAAGGGTGAAGAGGTTGGAGTACGAAAACAACAAGCTGTCTAATGAGAAGAGGTGGGCGGTGGATGTGTACTCAAGAAAGATCTCCACACTAGAATACAGGGTGTGGGAGTTGGATCACCAAAACAACAAACTGTCCAGTGAGCTGGTAAGGCAAACGGAGGACACGAGGACAGTGGGTCTGCTGTTCATGAATGCTGCCGATAGGTACCAACACGTAGCAGAGGTGCAGATTAGGACAAAGGAAGAGGAATTGGTGAACATGAGGAAGGCAAGCATGCAGTTAATGAACGCTGCTGATACGTACCAAGAAGTAACAAGGAAGCAAATTAAGGCAAAGGAGGATGACCTGGAGGATGCGAGGAAGGCAATTTTAATGATCATGAATGCTGCTGATACATATCAACAAGTAGCAGAGAAGAAAATTAAGGATAAGGTGGAGGAATTGAGGGTTCTTGGGGTTCAAAAGGCAGAGATAGATGCAAGGATAGCATCATTGGAGTCTAGGCTCGAGGCAGCTCTAGTGAAGAATCAGGAATTGGAGTCTACTTCTGTTAAGGCGTTGATTGAAAATGATATGCTTTGGTCGGTCATTGAGAGGCTCATGATGGGCGGACTAGTTGAGGTGAAAGAGGCAGCTGCAAAGGCATCTGATTCTGAAAAAGTAGAAATCATGAAGGAATTAGAAGACCATAACATGAAGGTGGAGGAAATTCAGACCAACAAGAATATGACGAAGGGTGAAAATGATAAGATTCAGTCAAAGGTTTTGAGAGAAATGCAGAAACATAGCTTGTTTGAAGCAAGGGTTGAGAGGCTCAAGATGGAGCTAGATGCGTTGGTCAAGGCGTAA
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| CDS seq | ATGGAGGCGGCGGCGTTTATTGCCGGGGCTGCCACGGCAAGGGGCTTGCAGTTGTCCCGAAGGGTGAAGGAGTTGGAGAGCCAAAACACTACACTATCTAATGAGAAGAATGACCTGGAGAGAAGGGTGAAGAGGTTGGAGTACGAAAACAACAAGCTGTCTAATGAGAAGAGGTGGGCGGTGGATGTGTACTCAAGAAAGATCTCCACACTAGAATACAGGGTGTGGGAGTTGGATCACCAAAACAACAAACTGTCCAGTGAGCTGGTAAGGCAAACGGAGGACACGAGGACAGTGGGTCTGCTGTTCATGAATGCTGCCGATAGGTACCAACACGTAGCAGAGGTGCAGATTAGGACAAAGGAAGAGGAATTGGTGAACATGAGGAAGGCAAGCATGCAGTTAATGAACGCTGCTGATACGTACCAAGAAGTAACAAGGAAGCAAATTAAGGCAAAGGAGGATGACCTGGAGGATGCGAGGAAGGCAATTTTAATGATCATGAATGCTGCTGATACATATCAACAAGTAGCAGAGAAGAAAATTAAGGATAAGGTGGAGGAATTGAGGGTTCTTGGGGTTCAAAAGGCAGAGATAGATGCAAGGATAGCATCATTGGAGTCTAGGCTCGAGGCAGCTCTAGTGAAGAATCAGGAATTGGAGTCTACTTCTGTTAAGGCGTTGATTGAAAATGATATGCTTTGGTCGGTCATTGAGAGGCTCATGATGGGCGGACTAGTTGAGGTGAAAGAGGCAGCTGCAAAGGCATCTGATTCTGAAAAAGTAGAAATCATGAAGGAATTAGAAGACCATAACATGAAGGTGGAGGAAATTCAGACCAACAAGAATATGACGAAGGGTGAAAATGATAAGATTCAGTCAAAGGTTTTGAGAGAAATGCAGAAACATAGCTTGTTTGAAGCAAGGGTTGAGAGGCTCAAGATGGAGCTAGATGCGTTGGTCAAGGCGTAA
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| Protein seq | MEAAAFIAGAATARGLQLSRRVKELESQNTTLSNEKNDLERRVKRLEYENNKLSNEKRWAVDVYSRKISTLEYRVWELDHQNNKLSSELVRQTEDTRTVGLLFMNAADRYQHVAEVQIRTKEEELVNMRKASMQLMNAADTYQEVTRKQIKAKEDDLEDARKAILMIMNAADTYQQVAEKKIKDKVEELRVLGVQKAEIDARIASLESRLEAALVKNQELESTSVKALIENDMLWSVIERLMMGGLVEVKEAAAKASDSEKVEIMKELEDHNMKVEEIQTNKNMTKGENDKIQSKVLREMQKHSLFEARVERLKMELDALVKA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0161400 | OsNip_04t0161400-00 | Chr04 | 4225748 | 4226837 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGGCGGCGGCGTTTATTGCCGGGGCTGCCACGGCAAGGGGCTTGCAGTTGTCCCGAAGGGTGAAGGAGTTGGAGAGCCAAAACACTACACTATCTAATGAGAAGAATGACCTGGAGAGAAGGGTGAAGAGGTTGGAGTACGAAAACAACAAGCTGTCTAATGAGAAGAGGTGGGCGGTGGATGTGTACTCAAGAAAGATCTCCACACTAGAATACAGGGTGTGGGAGTTGGATCACCAAAACAACAAACTGTCCAGTGAGCTGGTAAGGCAAACGGAGGACACGAGGACAGTGGGTCTGCTGTTCATGAATGCTGCCGATAGGTACCAACACGTAGCAGAGGTGCAGATTAGGACAAAGGAAGAGGAATTGGTGAACATGAGGAAGGCAAGCATGCAGTTAATGAACGCTGCTGATACGTACCAAGAAGTAACAAGGAAGCAAATTAAGGCAAAGGAGGATGACCTGGAGGATGCGAGGAAGGCAATTTTAATGATCATGAATGCTGCTGATACATATCAACAAGTAGCAGAGAAGAAAATTAAGGATAAGGTGGAGGAATTGAGGGTTCTTGGGGTTCAAAAGGCAGAGATAGATGCAAGGATAGCATCATTGGAGTCTAGGCTCGAGGCAGCTCTAGTGAAGAATCAGGAATTGGAGTCTACTTCTGTTAAGGCGTTGATTGAAAATGATATGCTTTGGTCGGTCATTGAGAGGCTCATGATGGGCGGACTAGTTGAGGTGAAAGAGGCAGCTGCAAAGGCATCTGATTCTGAAAAAGTAGAAATCATGAAGGAATTAGAAGACCATAACATGAAGGTGGAGGAAATTCAGACCAACAAGAATATGACGAAGGGTGAAAATGATAAGATTCAGTCAAAGGTTTTGAGAGAAATGCAGAAACATAGCTTGTTTGAAGCAAGGGTTGAGAGGCTCAAGATGGAGCTAGATGCGTTGGTCAAGGCGTAA
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| Protein seq | MEAAAFIAGAATARGLQLSRRVKELESQNTTLSNEKNDLERRVKRLEYENNKLSNEKRWAVDVYSRKISTLEYRVWELDHQNNKLSSELVRQTEDTRTVGLLFMNAADRYQHVAEVQIRTKEEELVNMRKASMQLMNAADTYQEVTRKQIKAKEDDLEDARKAILMIMNAADTYQQVAEKKIKDKVEELRVLGVQKAEIDARIASLESRLEAALVKNQELESTSVKALIENDMLWSVIERLMMGGLVEVKEAAAKASDSEKVEIMKELEDHNMKVEEIQTNKNMTKGENDKIQSKVLREMQKHSLFEARVERLKMELDALVKA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0160600 | RBH | 0.722173 | 0.869194 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07920 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0161400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002170 | RBH | 0.0 | 3.864706 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002290 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002100 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002150 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002140 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0065300 | RBH | 1.7873785 | 1.923288 | 0.1910595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002180 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0063600 | RBH | 0.2993565 | 0.4709915 | 0.0179145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002280 | RBH | 2.301323 | 6.716163 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002090 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002270 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002190 | RBH | 0.0 | 9.525661 | 0.0 |
