Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0155000 | OGI:04011550 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:3783358-3784338 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTCCCATCTCTCTTCTCTAATACCCTCTCAAACATTCGCTGCAGGGGCTGGTGGTGGCACTTCGACAGGGTGCTAGAGTTGGAGAGCCAAAAAAGGCAGTTGGAGAACCAAAACTGGCAGTTGGAGCAACAAAACTCTAGACTGTCCAGTGAGAAGCGTGACCTGGAGAGCAGGGTGAGGAGGTTGGGTTATGAAAACACCAATCTATTAGAAGAGAAGATGAGGGTTGCTCATGAGTCCTCAAGAAAGGTCTCCGCACTGGAGTACCGGGTGCGGGAGTTAGAGCACCAAAACACCAAACTGTCCAGTGAGCTGGTGAAGCAACGGGAGAACACGAGGAAGGCGGGTCAGCTGTTCATGAATGCTGCCGATACGTACCAACAAGTAGCAGAGAAGCAAATTAGGACAAAGGAAGAGGAATTGGCAAACACGAGGAAGGCAGGCCTCCTGTTAATGAACGCTGCTGATACGTACCAAGAAGTAGCAAGGAAGCAAATTAAAGCAAAGGTGGAGGACCTAGAGGATGCGAGGAAGGCGGTTTTGGTGGTCATGAATGCTGCCGATACATACCAACTAGAAGCGGAGAAGAAAATTAAGGATAAGGTGGAGGAATTGAGGGTCCTTGGGGTCCAGAAGGCAGAAATGGATGCGAGGGCTGCATCTTTGGAATCAGGGCTTAAGACAGCTCTAGCGAAGAATCAGGAATTGGAGGCTGAGTGTGATAAGGTGATGATTGAAAATAATATGCTTTGGTTGGAGGTTGAGAGGCTCATGATGGAATTGAGGGTAATGGCACACAAGAAAGAGGCAGCTGCAAATGCATTTGGTGCTGAAAAGGCAGAAACTATGAAGGAATTGAAAGACCATGAGATGAATGTGGAGGAAATTACGACTAGCATGGATTTGATGAAGGGTGAAAATGATAAGATTCAGTTGGAGATCTTGACAGCAGGCAGAAACATTGCTTGCTTGAATTAG
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| CDS seq | ATGGTCCCATCTCTCTTCTCTAATACCCTCTCAAACATTCGCTGCAGGGGCTGGTGGTGGCACTTCGACAGGGTGCTAGAGTTGGAGAGCCAAAAAAGGCAGTTGGAGAACCAAAACTGGCAGTTGGAGCAACAAAACTCTAGACTGTCCAGTGAGAAGCGTGACCTGGAGAGCAGGGTGAGGAGGTTGGGTTATGAAAACACCAATCTATTAGAAGAGAAGATGAGGGTTGCTCATGAGTCCTCAAGAAAGGTCTCCGCACTGGAGTACCGGGTGCGGGAGTTAGAGCACCAAAACACCAAACTGTCCAGTGAGCTGGTGAAGCAACGGGAGAACACGAGGAAGGCGGGTCAGCTGTTCATGAATGCTGCCGATACGTACCAACAAGTAGCAGAGAAGCAAATTAGGACAAAGGAAGAGGAATTGGCAAACACGAGGAAGGCAGGCCTCCTGTTAATGAACGCTGCTGATACGTACCAAGAAGTAGCAAGGAAGCAAATTAAAGCAAAGGTGGAGGACCTAGAGGATGCGAGGAAGGCGGTTTTGGTGGTCATGAATGCTGCCGATACATACCAACTAGAAGCGGAGAAGAAAATTAAGGATAAGGTGGAGGAATTGAGGGTCCTTGGGGTCCAGAAGGCAGAAATGGATGCGAGGGCTGCATCTTTGGAATCAGGGCTTAAGACAGCTCTAGCGAAGAATCAGGAATTGGAGGCTGAGTGTGATAAGGTGATGATTGAAAATAATATGCTTTGGTTGGAGGTTGAGAGGCTCATGATGGAATTGAGGGTAATGGCACACAAGAAAGAGGCAGCTGCAAATGCATTTGGTGCTGAAAAGGCAGAAACTATGAAGGAATTGAAAGACCATGAGATGAATGTGGAGGAAATTACGACTAGCATGGATTTGATGAAGGGTGAAAATGATAAGATTCAGTTGGAGATCTTGACAGCAGGCAGAAACATTGCTTGCTTGAATTAG
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| Protein seq | MVPSLFSNTLSNIRCRGWWWHFDRVLELESQKRQLENQNWQLEQQNSRLSSEKRDLESRVRRLGYENTNLLEEKMRVAHESSRKVSALEYRVRELEHQNTKLSSELVKQRENTRKAGQLFMNAADTYQQVAEKQIRTKEEELANTRKAGLLLMNAADTYQEVARKQIKAKVEDLEDARKAVLVVMNAADTYQLEAEKKIKDKVEELRVLGVQKAEMDARAASLESGLKTALAKNQELEAECDKVMIENNMLWLEVERLMMELRVMAHKKEAAANAFGAEKAETMKELKDHEMNVEEITTSMDLMKGENDKIQLEILTAGRNIACLN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0155000 | OsNip_04t0155000-00 | Chr04 | 3783358 | 3784338 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTCCCATCTCTCTTCTCTAATACCCTCTCAAACATTCGCTGCAGGGGCTGGTGGTGGCACTTCGACAGGGTGCTAGAGTTGGAGAGCCAAAAAAGGCAGTTGGAGAACCAAAACTGGCAGTTGGAGCAACAAAACTCTAGACTGTCCAGTGAGAAGCGTGACCTGGAGAGCAGGGTGAGGAGGTTGGGTTATGAAAACACCAATCTATTAGAAGAGAAGATGAGGGTTGCTCATGAGTCCTCAAGAAAGGTCTCCGCACTGGAGTACCGGGTGCGGGAGTTAGAGCACCAAAACACCAAACTGTCCAGTGAGCTGGTGAAGCAACGGGAGAACACGAGGAAGGCGGGTCAGCTGTTCATGAATGCTGCCGATACGTACCAACAAGTAGCAGAGAAGCAAATTAGGACAAAGGAAGAGGAATTGGCAAACACGAGGAAGGCAGGCCTCCTGTTAATGAACGCTGCTGATACGTACCAAGAAGTAGCAAGGAAGCAAATTAAAGCAAAGGTGGAGGACCTAGAGGATGCGAGGAAGGCGGTTTTGGTGGTCATGAATGCTGCCGATACATACCAACTAGAAGCGGAGAAGAAAATTAAGGATAAGGTGGAGGAATTGAGGGTCCTTGGGGTCCAGAAGGCAGAAATGGATGCGAGGGCTGCATCTTTGGAATCAGGGCTTAAGACAGCTCTAGCGAAGAATCAGGAATTGGAGGCTGAGTGTGATAAGGTGATGATTGAAAATAATATGCTTTGGTTGGAGGTTGAGAGGCTCATGATGGAATTGAGGGTAATGGCACACAAGAAAGAGGCAGCTGCAAATGCATTTGGTGCTGAAAAGGCAGAAACTATGAAGGAATTGAAAGACCATGAGATGAATGTGGAGGAAATTACGACTAGCATGGATTTGATGAAGGGTGAAAATGATAAGATTCAGTTGGAGATCTTGACAGCAGGCAGAAACATTGCTTGCTTGAATTAG
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| Protein seq | MVPSLFSNTLSNIRCRGWWWHFDRVLELESQKRQLENQNWQLEQQNSRLSSEKRDLESRVRRLGYENTNLLEEKMRVAHESSRKVSALEYRVRELEHQNTKLSSELVKQRENTRKAGQLFMNAADTYQQVAEKQIRTKEEELANTRKAGLLLMNAADTYQEVARKQIKAKVEDLEDARKAVLVVMNAADTYQLEAEKKIKDKVEELRVLGVQKAEMDARAASLESGLKTALAKNQELEAECDKVMIENNMLWLEVERLMMELRVMAHKKEAAANAFGAEKAETMKELKDHEMNVEEITTSMDLMKGENDKIQLEILTAGRNIACLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0160600 | SBH | 0.722173 | 0.869194 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07830 | SBH | 0.337153 | 0.358953 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0155000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002020 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002140 | RBH | 0.103502 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002110 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002100 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0064400 | SBH | 2.93417 | 7.016341 | 0.6537655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002140 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0062200 | SBH | 1.9421885 | 9.043881 | 0.3856395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002220 | SBH | 0.051991 | 0.084238 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002220 | SBH | 2.694831 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002190 | SBH | 0.0 | 0.433495 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002220 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002140 | RBH | 0.0 | 0.0 | 0.0 |
