Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0117500 | OGI:04003750 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:1042772-1044783 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACAGCTACAGGTGGTGGCACATGTTCCTGATCATGCTGGTGTTGTACTCGGCATGGGCATCGCCATTTGAGCTGTCCATGGAGAAGGCAGCCTCCATTGCTCTTGTTGTCATTAGGCCTAGTGGTCGATGTCTTCTTCGCCATCGACATTGCCATATCCTTCTTCGTCACGTACCGTGACACCTCCACTTGCCTCCTCATAACTGACCGCAGGAAGATCACAACTAGGTGATGATCCCTCACTCTATGCTACTCACACGTGCCTCTCCATGGATTTTCTTTTTGTTTCTGTTAGAGTTCTGATTTGTTAATATGCACGGACTGAACTATTAGGTACCTAAAATGGCCATGTTTCACTCTGGATGTGGCCTCGACGATTCCTTTACAAATAATCTACCAGCTTGTCACTGGCAAAAGACAAGGACTATGGGGGCTCCTCAATCTTCTCCGTCTCTGGCGACTACGGTGTGCCAGCAAGCTCTTTGCAAGGTACATACCAACGCATATAGTAGAGTTGATAACATGGTTCATCAATTGCTTATATGGACAATAACAGAACAGCATGTTGTATGCATATGTGTTTCAGTTGTTGATATGGAATTCTGAATCTTGCAGGGTGGAGAAGGACGTCAGATTCAGCTATTTGTGGACTAGGCTTATCAAGCTCCTCTGTGTAAGATTATACTGTTCGACATTGTCACAGACACATGACATCTTGGCAATTGTTCATTCCTACCTAGTATGCTTGTGCTCACCTTCTGCATATGGATGCAGGTGACACTGTTTGCGTTGCACTTTGCCGCTTGCATCTACCTATGGATGGTATTCAACTACAAGATCAAGGAGCTTACATGGATAGGCAGCCAGATCCATAGCTTTGAGGACCGGAGCGTGTGGTTTTGCTACACCTGTGCAGTGTACTGGTCCATCACCACGCTTGCCACGGTCGGCTATGGCGACCTGCATGCCACCAACATCGGCGAGATGCTGTTCAGCATAGCCTTCATGCTCTTCAACATGGGCCTCACATCCTACATCATCGGCAACATCACCAACCTCGTTGTTCGTGAAACCTCCAACACCTTCAAGATGGTAAGCTACCTGCATACCTTGCACATGTTCTTTTTCTTCAGCAATTTAAGCTCACTTTAGTGATCGATCGTGGCTTGTTCAGAGGGACATGGTGCAGTGGGTATCGGAGTTCGGGAGCATGAACCGGCTGCCAGAGGTGATGAGGGAGCAAATGTTGGCCAACGGGCAGCTCAGGTTCAGGACAAAGGAGCAGCTGCAGCATGAGGTGCTTTAAGAGTTGCCCAAGGCTGTGCGGTCGGGCGTCATGAAGCACCTATTCAAGAGTGCTGTCGAGAGTTGCTACCTGTTCCAGGGAGTCTCCGTCAGCCTCATTCTGCAGCTGGTAATGCCATTCACTGCTAAATGGAGTAGCAAATGCTTTGAATAACTCTGCATGTACCAATGGACTGACTGATTAACGAAATAAATTCAGGTCACGGAGATGAAAGCAGAATTCTTTCCCCCAAGGCAAATGTTATCCTGGAGAATGAAACCTCGACGGACTGTTATATCATCATCTCCGGCAAAGTGGTAAGAACATCCCCCATATGTTGTTCATTCTCTTTAGTGTTCATGATCTGATAGGGAAGTCATTTGACTAATTGTATCTCTCTTTCATTTTTCCCCTGTATCAGGAGGCATTGACAACCCTTGCAGATGGGAAATAGAAGGTACTTTACATAAACTCACTTATTGTTCTCAAGATACTGAAGTTCTAAAGCTTGAAATATCTCTGACGAAATTGTATGCCCTTTCAGCATGTGAAGAGAATAGGACCTCGGGGCATGGTAGGGGAAATTGGAGTGATGTTCAGCATTCCACAGCCATTCACCATTCGGAGCAGGAGGCTCACCCAGGTTGTCCGCATAAGCCACATCCATCTGCTCCAGGCTGTCCGGCCTAACACCGCAGATGGGTGCATCGTGTTCTCCAATTTTATTC
More
|
||||||||||
| CDS seq | TCATGCTGGTGTTGTACTCGGCATGGGCATCGCCATTTGAGCTGTCCATGGAGAAGGCAGCCTCCATTGCTCTTGTTGTCATTAGGCCTAGTGGTCGATGTCTTCTTCGCCATCGACATTGCCATATCCTTCTTCGTCACGTACCGTGACACCTCCACTTGCCTCCTCATAACTGACCGCAGGAAGATCACAACTAGGTACCTAAAATGGCCATGTTTCACTCTGGATGTGGCCTCGACGATTCCTTTACAAATAATCTACCAGCTTGTCACTGGCAAAAGACAAGGACTATGGGGGCTCCTCAATCTTCTCCGTCTCTGGCGACTACGGTGTGCCAGCAAGCTCTTTGCAAGGGTGGAGAAGGACGTCAGATTCAGCTATTTGTGGACTAGGCTTATCAAGCTCCTCTGTGTGACACTGTTTGCGTTGCACTTTGCCGCTTGCATCTACCTATGGATGGTATTCAACTACAAGATCAAGGAGCTTACATGGATAGGCAGCCAGATCCATAGCTTTGAGGACCGGAGCGTGTGGTTTTGCTACACCTGTGCAGTGTACTGGTCCATCACCACGCTTGCCACGGTCGGCTATGGCGACCTGCATGCCACCAACATCGGCGAGATGCTGTTCAGCATAGCCTTCATGCTCTTCAACATGGGCCTCACATCCTACATCATCGGCAACATCACCAACCTCGTTGTTCGTGAAACCTCCAACACCTTCAAGATGAGGGACATGGTGCAGTGGGTATCGGAGTTCGGGAGCATGAACCGGCTGCCAGAGGTGATGAGGGAGCAAATGTTGGCCAACGGGCAGCTCAGGTTCAGGACAAAGGAGCAGCTGCAGCATGAGGTGCTTTAA
More
|
||||||||||
| Protein seq | SCWCCTRHGHRHLSCPWRRQPPLLLLSLGLVVDVFFAIDIAISFFVTYRDTSTCLLITDRRKITTRYLKWPCFTLDVASTIPLQIIYQLVTGKRQGLWGLLNLLRLWRLRCASKLFARVEKDVRFSYLWTRLIKLLCVTLFALHFAACIYLWMVFNYKIKELTWIGSQIHSFEDRSVWFCYTCAVYWSITTLATVGYGDLHATNIGEMLFSIAFMLFNMGLTSYIIGNITNLVVRETSNTFKMRDMVQWVSEFGSMNRLPEVMREQMLANGQLRFRTKEQLQHEVL |
||||||||||
| Function | Potassium channel KAT4 [UniProtKB/Swiss-Prot:Q652U9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0117500 | OsNip_04t0117500-00 | Chr04 | 1042772 | 1044783 | + | RAP2018-11-26 | ||
| CDS seq | TCATGCTGGTGTTGTACTCGGCATGGGCATCGCCATTTGAGCTGTCCATGGAGAAGGCAGCCTCCATTGCTCTTGTTGTCATTAGGCCTAGTGGTCGATGTCTTCTTCGCCATCGACATTGCCATATCCTTCTTCGTCACGTACCGTGACACCTCCACTTGCCTCCTCATAACTGACCGCAGGAAGATCACAACTAGGTACCTAAAATGGCCATGTTTCACTCTGGATGTGGCCTCGACGATTCCTTTACAAATAATCTACCAGCTTGTCACTGGCAAAAGACAAGGACTATGGGGGCTCCTCAATCTTCTCCGTCTCTGGCGACTACGGTGTGCCAGCAAGCTCTTTGCAAGGGTGGAGAAGGACGTCAGATTCAGCTATTTGTGGACTAGGCTTATCAAGCTCCTCTGTGTGACACTGTTTGCGTTGCACTTTGCCGCTTGCATCTACCTATGGATGGTATTCAACTACAAGATCAAGGAGCTTACATGGATAGGCAGCCAGATCCATAGCTTTGAGGACCGGAGCGTGTGGTTTTGCTACACCTGTGCAGTGTACTGGTCCATCACCACGCTTGCCACGGTCGGCTATGGCGACCTGCATGCCACCAACATCGGCGAGATGCTGTTCAGCATAGCCTTCATGCTCTTCAACATGGGCCTCACATCCTACATCATCGGCAACATCACCAACCTCGTTGTTCGTGAAACCTCCAACACCTTCAAGATGAGGGACATGGTGCAGTGGGTATCGGAGTTCGGGAGCATGAACCGGCTGCCAGAGGTGATGAGGGAGCAAATGTTGGCCAACGGGCAGCTCAGGTTCAGGACAAAGGAGCAGCTGCAGCATGAGGTGCTTTAA
More
|
|||||||
| Protein seq | SCWCCTRHGHRHLSCPWRRQPPLLLLSLGLVVDVFFAIDIAISFFVTYRDTSTCLLITDRRKITTRYLKWPCFTLDVASTIPLQIIYQLVTGKRQGLWGLLNLLRLWRLRCASKLFARVEKDVRFSYLWTRLIKLLCVTLFALHFAACIYLWMVFNYKIKELTWIGSQIHSFEDRSVWFCYTCAVYWSITTLATVGYGDLHATNIGEMLFSIAFMLFNMGLTSYIIGNITNLVVRETSNTFKMRDMVQWVSEFGSMNRLPEVMREQMLANGQLRFRTKEQLQHEVL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0254200 | SBH | 0.133193 | 0.136593 | 0.153070 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02720 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0117500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000860 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000810 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000850 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0021600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000980 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0021000 | RBH | 0 | 0 | 0.070397 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000940 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000820 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000910 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000970 | RBH | 0.0 | 0.0 | 0.0 |
