Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0844100 | OGI:03099170 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:35480693-35486359 | ||||||||
| Gene Symbol | RLCK123, OsRLCK123 | ||||||||||
| DNA seq | ATGAAATTCAGAACATGTTGCATCTATTGAAAGTTCAAACGATGTCTGGAGTATTTGACACCTCTGAAGTGAAGCTGTGGAAAAGAGAGGAAGCAGTATTCTTGCACCTACAGACCAATGTACAGCACAAATCTCAAACCGCAAACCTAAGGTAGCAACAAAAGGCAAAGAGAAATCCATGTGATCTGCATCCAACAGAGAACCCCACAAAAGAAACTTCTTAAACCAATTGCAATTACACACAGAATGCGCTGATTACGAACTGGCATGTGCCGGGAGGTCTACCATGAGCTAACATCTTAATTCTCAGTTGCTGGCGCCGGCTCTGAGGCAGCTGGCACTGCTGGTTTTTGTTGAAGCAGAGGAGAGAGCGCCTTGACAACAATGCTCATGTTGGGCCTGAACTCTGCTTCGTATTGGACACAAAGAGCTGCCACCGCAGCAAGCTGCAGATAAGTGCAACCAAGTACATCAACATGACATTATTTCAGGACTGCTACTCCAAATGATGTAAAAAGCATGTGCATCATAGTGTGTGTATGTGTGGGTGGGTGTGAGAGAGAGAGAGAGACGAGAGACTGACCTTAGCAACTCCCTTTGGAGGATATTCACTCTTTAACCTAGGATCTACACATTGTTTGACCTTGTCTTCGCTTAATCTAGGAGTAGCCTGGAGAGAAAAAGTACACAAACAAGTTAAATTTGGAACAACTACCTTTTCTTAAATTTGGAACAACTACCTTTTCTATCTCACTACGGGAGTAGTCTGGCTAATTAGATGGAATCAGAAAAGGTGTAATATGTATTTGAGAAAAAAAAAGGAAAAATGTAAACTATTTGAGAAATCAAGGTTCTCTATAGCAATCCAGATACAGGTTGTTTTTTATTCAAATAATCAAATCCAAAGCGACCTATAAACCTAACTAATTATTATTTAGAAATCATTTAAGTCTAGGATTGTCAGTGTCCAGTTAGCAGACAGTTATTGCTACGATTTGCAGTGCTGATTCATTGAACCTTCAATAAGTTGATGGACTCTGCTAGACGTTCATAGCGGTATTTCAGCATGCTTTTGTTGGCTAGATTCTTTTGTTTCATGTTCCTCAATGATGTCTTCTCTTGCCACTAATTACTTTCTTGGTCTTTACATATAACCAGTAGAAATGAAGAAAATTATTATAATTGACCAAAAAAATTAGCAACCAAAGCAAAAACAAGATAAGAAAACTAGTAACATGTCCGTGCGTTGCAACAGACGAATACAACTGAGAATGGGTTGCATGGGCCCATACGACTGGGAATGGGCTGGATCGAGCATAAGGCGCATACAACTGGTATTTTTCTGTTATTTTCAGGCCTAGAAGGCAGTGCTTGTGTGCTTTGTGACGCGTGGGAAGGAGCGTATGGACGACTCCGCTTTTAGGTGGTAGAGACAACTTACCCAAGTGACTAGACTTTGCTGTCCCCGAGGCATTGTGTGGTCCACTGGTTTCCTTCCAGTCAGGAGTTCCAAAAGAACTACACCAAAACTGTACACATCACTCTTCTGCGTCAGCTGGCCAGTCATAGCATATCTGCGGCAAGTAGGGTTATATAAGTTAAGAGAGGAAATGCATAAAAATACACGGCATCAAGTATTTCCACAACTCATGCCAAGAACACTTATCCTCATTTCGCTGAAACGTTCATCTACCTGGACAAACTAGCAAACAAAAGACTTGTTTCTAAAGAAATTACAATTAACTTACACAAGACGGTGAAAAGATCAAATAACAACAAAACAGATAAAACACAAAATTAGTGAACAGATTTTTCCTTTGTAGGCAGAGGAAAGTAAAGGCATTATGTTTGCTCCAGATATAATAGCTTTGCAGGTAGAAGAAATATCGCAACAAACAAATATAATAATCATAATAATGCTCAAGAGGTCAGTCGTAAAAGGTTCCTGCTTAATTCAGCCTAGGTAATCCAACATGATGTTATAAATCACTTAGATGCATCACACTCATTATGCAAATTAGCAATGTTCTGCATAACTTTCCAGAATGAATGCTGCATGCAGATAGTGGTTCACAGAATATGGAGTATAACATGTCAGTTGACTTCCCCCAAAAAGAAATTAAGGCACTGCCCAAATACTGGTTGTGTTGACAGACCTCTCTCCAAAATGGCATATTCACACCCAAAATAAGTTGGCTTTCCCAAAAAAAAAATATAAGGCACTATCCAAAGATAGTGGTTGTGTTGACAGACCTTAAATGGCATAATCACACCCAAAATAAGTAAAGTTGTTTTTTGGCAACACCTACATGGTACCATTGTCAGCTGTTTTTCAAACAAAAAAAAAAGGTTATGTAAGAACAGCTACATGCATAAATTTCACTACAACCCAAAGGCATTCAATACTTGGTTCTACGTACTATTTGATGTTTCCTGCCAAACCGATTAACTAGATCAGTTTGCTATTCTGCTAACAGAAAAATAGCATACATAGCTTAAGGCCCAAATAAGTACTACAATGTACAAGACAACTCAATATCAATGTATAACAGGATATCATACTATCAAAATGGAAGTGTAATGGCCAAGAAAAAAAAATAGTCATTGCTTGATTAAAACAGTAAGGTCAGAATTACTTGTCATCTCTTGGATACATAGCGAACATTAATTTACTTGCCAAATGTGTAAAAAAAAACTGTTGCAATTATAAAAACCAGACAGATCTTCCACCTCGTCAAGGCCCAGGATCACCAAGTCGGCCTTAGTTTCTAAAAAGTTATACTATGAATTTCTATATTCACTAGCCTCAGCAGTTTTTCATGCAATCTTGTGAAAAAAGAAGTCATCAGTTTGGATCAGGGAGTTCTTTTTCAAAAGAAAAAAAAAAATACCACAACCACTCACACTGTTTGGTCCATTGTCATTTAGGTCAGTAAGTCTCACAGTATTGTGCCATGGCCTCCACATTTGAGGCTTCATGCATGTGGCCCTGGTCGGCAGGGCTGCCAGCCAGCCACTGCCTCTGGTGTTACTTTGGAGGCACTGAGAGTACACAGTTCTGATCTTAGGAGCACATAAGATAGCTCTGGTGATGTCTATTCGATATGAACCTGAAGGTATGTGCACCCTTGCCCATGAATACAACCATACAAGCACAGCAAAAATATGAAAGCAAACTAGACGAGGATAACCTACGAATTTGTTCATCCAAAAAAAACATATCAGACCTTTGACATTTCAAGGCAACAATCCTTAAAGATGGGACCTACCACATTGACAAGAATAGACACCACAGTGACTCTCTCAGTTTTTCAATACACTATGTCAGTATTAACATATTTTAGTTGGTTCAAAACATATATTTTAACTACTGTTGGGCTGGATTAAAAATTGAAGTAAGACGCGATATAGTGAGTTCTATGAAGAAATGCATTGGTATAAATTAGACATTACTCTGGTGCATGATATCCAAAGGTTCCTAATACACGAGTTGAATGAAGGCGTGCTGCCATATCTGGAGCTTGATTTAAGAGATTGAAATCTGCAATTTTTGCCTTGAAGTCCTCAAACAGAAGTACATTGCTTGATCTGATGTCCCGATGAATGATTGAAGGCTGAACCTTCTCATGCAGGTACTCTAAGCCTTTTGCTGCCTCTATAGCAATTTTTACCCTCTGCGTCCAATCAAGTACAGGACCAGGCTGCGCACCTTGAACTCCTTTTCTTCCTGTTGTGTTAAGAGAAGTTGATTATAACTGACCTGGATTTGCATTCCACATGCTAAAGATAGTAGGTGCTCAAGGTCTTACCATGGAGAACATCATGAAGGGAACCCATGGTCGCAAATTCGTATGCCAGTATACGATAATTGCCCTCTACACAGTAACCCAACATCTCCACAAGATTTTCATGCTTTAGCCTTGATGCCTGGGAGACCTAGAGTCCACAAAAACATAAACAAAAGTAATAGCTTTAGAATTGTTGCACTGTCATCAAGTCCTGAGACAGACAAATAGACAATGTGAAATTTAAGCTAAGAAACCTATGATTCTGCAAGTGATCACCTGTTTCAAGAATTCGTCGTTAGGCTCATTTTCAGATGCATCCAATTTTTTAACTGCTGCTTGCCTCCCATCATCCAAAGTGGCATGGTATACTCGTCCATATGAACCTTCACCAATCAGAGCATTTGATCCAAAATTGTCGGTTTTTTGTTTTAAGTCCTCCAGTGACAACTCAGGGACATCAATTGTAAGTGGGGCTATCTCTGGTTCAGGTTGACCAGCAGGAGGTTTTGAAGACTTTTGCTTGGCTGATGAATGGAAACATAACAATATAATCAGAAAGGGTTCAACTTCAACATCAAAACTTCATATCAGCTAGTAGTCATACATCATACACATTCCAAATTATTTACTCAAATAGATCATAGCAGAATATCTTCCAATGTTCAAGTGAAAATAAACAACAGAAAGAACCAAGTCTGTCACAAGAGCATTAACACCCAACTTTACCACCCACAGAACTTTTTGTGAATTAGGCTCAAAAGAATATAAGTGTAATTTGCCTAATGCAACAGTAGCTTGCTATATAAAAGCAAGAACTGGCATTCCACGAACACAGCTTGAAACATCTTCCAGCCAATTTGCATAGGATGGTAAATATAGTGGCGCATATGTTAGTATGGTCCTTACTCCAATTGCATCATAACAAAAGAGGAGTAAAGGATGGTTCTATAGCAATCTTATAATGGGCCAACTGTTACTGAAATTCACATGGAAAACACACGACAAAATAACCGCACCATCCATCTTATTGCCCTGAGCATTGGAGCGTTCCTTCCCATGGTCATCCTCCTCGTCAAAGTGGCAATTACAACAAAACCACTGCCTCATATTGTCTCCTCACAACTTGAACACCTGAACCAAATGCACGGAATAGTTAGCATACGTATAAAGATCAGAGCACATAATTGACCAATGCATTAAATTACGCAAGAAGTACACTTCTGTACAGTGTACAACATCTGTACTCTCAGCAGGTTGGAACTAAGTCAACTAGAGTCTTACTGTTTTCCTCTACGGAAAAGCTTACAGTTTCCAGATTCAACATGCAACAGTGTGGACCAACATGCCTTCTTAGAAGCAGTAAACCTAAAATCTAGTAATCTACAAACCACTGTGAGTACGGCTATTTCAGGTACTATGCGAGCGTAGCAATCCAATCGCTTAAATAAGCAATAATAATAATAATAATAATAATAATCAAAGTGCTAATAACCAGGATGGATTGGGGGTATCCACTCCCAGACAGAAGTATGGATTTGAATTACGCTGACAGCAAAGTGAGAAGCAAAACCCACACTGATGGAACAGCGATCAGAGCAGAGGGCTACCACTCACCAAGCAAACGAAATCACCGCCGGGTTCGATGGCGATGGCGCGACGAGAGAATTCGAGACACCACCAGGGGGAGCTAGGGTTCAGAGGCGAGACGAAGTGGAGCTTGGGCGCGCACAGGCTCAGGGGAGGGTGGAGGAAGTGGCCGGCAGCGGCAGCGGCGGCGGCGGCGGTGGCGCAGCCTCCGCGTCCTGGTTGCCTGCTCGAGTTAAAGCCGCCGTCCTTATGGGAGGGGAAGGGGATTATTAGTATTAATCGGTATTAATCC
More
|
||||||||||
| CDS seq | ATGAGGCAGTGGTTTTGTTGTAATTGCCACTTTGACGAGGAGGATGACCATGGGAAGGAACGCTCCAATGCTCAGGGCAATAAGATGGATGCCAAGCAAAAGTCTTCAAAACCTCCTGCTGGTCAACCTGAACCAGAGATAGCCCCACTTACAATTGATGTCCCTGAGTTGTCACTGGAGGACTTAAAACAAAAAACCGACAATTTTGGATCAAATGCTCTGATTGGTGAAGGTTCATATGGACGAGTATACCATGCCACTTTGGATGATGGGAGGCAAGCAGCAGTTAAAAAATTGGATGCATCTGAAAATGAGCCTAACGACGAATTCTTGAAACAGGTCTCCCAGGCATCAAGGCTAAAGCATGAAAATCTTGTGGAGATGTTGGGTTACTGTGTAGAGGGCAATTATCGTATACTGGCATACGAATTTGCGACCATGGGTTCCCTTCATGATGTTCTCCATGGAAGAAAAGGAGTTCAAGGTGCGCAGCCTGGTCCTGTACTTGATTGGACGCAGAGGGTAAAAATTGCTATAGAGGCAGCAAAAGGCTTAGAGTACCTGCATGAGAAGGTTCAGCCTTCAATCATTCATCGGGACATCAGATCAAGCAATGTACTTCTGTTTGAGGACTTCAAGGCAAAAATTGCAGATTTCAATCTCTTAAATCAAGCTCCAGATATGGCAGCACGCCTTCATTCAACTCGTGTATTAGGAACCTTTGGATATCATGCACCAGAATATGCTATGACTGGCCAGCTGACGCAGAAGAGTGATGTGTACAGTTTTGGTGTAGTTCTTTTGGAACTCCTGACTGGAAGGAAACCAGTGGACCACACAATGCCTCGGGGACAGCAAAGTCTAGTCACTTGGGCTACTCCTAGATTAAGCGAAGACAAGGTCAAACAATGTGTAGATCCTAGGTTAAAGAGTGAATATCCTCCAAAGGGAGTTGCTAAGCTTGCTGCGGTGGCAGCTCTTTGTGTCCAATACGAAGCAGAGTTCAGGCCCAACATGAGCATTGTTGTCAAGGCGCTCTCTCCTCTGCTTCAACAAAAACCAGCAGTGCCAGCTGCCTCAGAGCCGGCGCCAGCAACTGAGAATTAA
More
|
||||||||||
| Protein seq | MRQWFCCNCHFDEEDDHGKERSNAQGNKMDAKQKSSKPPAGQPEPEIAPLTIDVPELSLEDLKQKTDNFGSNALIGEGSYGRVYHATLDDGRQAAVKKLDASENEPNDEFLKQVSQASRLKHENLVEMLGYCVEGNYRILAYEFATMGSLHDVLHGRKGVQGAQPGPVLDWTQRVKIAIEAAKGLEYLHEKVQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKSEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALSPLLQQKPAVPAASEPAPATEN |
||||||||||
| Function | PTI1-like tyrosine-protein kinase 3 [UniProtKB/Swiss-Prot:B9DFG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0844100 | OsNip_03t0844100-01 | Chr03 | 35480696 | 35486307 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGGCAGTGGTTTTGTTGTAATTGCCACTTTGACGAGGAGGATGACCATGGGAAGGAACGCTCCAATGCTCAGGGCAATAAGATGGATGCCAAGCAAAAGTCTTCAAAACCTCCTGCTGGTCAACCTGAACCAGAGATAGCCCCACTTACAATTGATGTCCCTGAGTTGTCACTGGAGGACTTAAAACAAAAAACCGACAATTTTGGATCAAATGCTCTGATTGGTGAAGGTTCATATGGACGAGTATACCATGCCACTTTGGATGATGGGAGGCAAGCAGCAGTTAAAAAATTGGATGCATCTGAAAATGAGCCTAACGACGAATTCTTGAAACAGGTCTCCCAGGCATCAAGGCTAAAGCATGAAAATCTTGTGGAGATGTTGGGTTACTGTGTAGAGGGCAATTATCGTATACTGGCATACGAATTTGCGACCATGGGTTCCCTTCATGATGTTCTCCATGGAAGAAAAGGAGTTCAAGGTGCGCAGCCTGGTCCTGTACTTGATTGGACGCAGAGGGTAAAAATTGCTATAGAGGCAGCAAAAGGCTTAGAGTACCTGCATGAGAAGGTTCAGCCTTCAATCATTCATCGGGACATCAGATCAAGCAATGTACTTCTGTTTGAGGACTTCAAGGCAAAAATTGCAGATTTCAATCTCTTAAATCAAGCTCCAGATATGGCAGCACGCCTTCATTCAACTCGTGTATTAGGAACCTTTGGATATCATGCACCAGAATATGCTATGACTGGCCAGCTGACGCAGAAGAGTGATGTGTACAGTTTTGGTGTAGTTCTTTTGGAACTCCTGACTGGAAGGAAACCAGTGGACCACACAATGCCTCGGGGACAGCAAAGTCTAGTCACTTGGGCTACTCCTAGATTAAGCGAAGACAAGGTCAAACAATGTGTAGATCCTAGGTTAAAGAGTGAATATCCTCCAAAGGGAGTTGCTAAGCTTGCTGCGGTGGCAGCTCTTTGTGTCCAATACGAAGCAGAGTTCAGGCCCAACATGAGCATTGTTGTCAAGGCGCTCTCTCCTCTGCTTCAACAAAAACCAGCAGTGCCAGCTGCCTCAGAGCCGGCGCCAGCAACTGAGAATTAA
More
|
|||||||
| Protein seq | MRQWFCCNCHFDEEDDHGKERSNAQGNKMDAKQKSSKPPAGQPEPEIAPLTIDVPELSLEDLKQKTDNFGSNALIGEGSYGRVYHATLDDGRQAAVKKLDASENEPNDEFLKQVSQASRLKHENLVEMLGYCVEGNYRILAYEFATMGSLHDVLHGRKGVQGAQPGPVLDWTQRVKIAIEAAKGLEYLHEKVQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKSEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALSPLLQQKPAVPAASEPAPATEN
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0844100 | OsNip_03t0844100-02 | Chr03 | 35480693 | 35486359 | - | IsoSeq | ||
| CDS seq | ATGAACAAATTCGTAGGTTATCCTCGTCTAGTTTGCTTTCATATTTTTGCTGTGCTTGTATGGTTGTATTCATGGGCAAGGGTGCACATACCTTCAGGTTCATATCGAATAGACATCACCAGAGCTATCTTATGTGCTCCTAAGATCAGAACTGTGTACTCTCAGTGCCTCCAAAGTAACACCAGAGGCAGTGGCTGGCTGGCAGCCCTGCCGACCAGGGCCACATGCATGAAGCCTCAAATGTGGAGGCCATGGCACAATACTGTGAGACTTACTGACCTAAATGACAATGGACCAAACAGTGTGAGTGGTTGTGGTATTTTTTTTTTTCTTTTGAAAAAGAACTCCCTGATCCAAACTGATGACTTCTTTTTTCACAAGATT
More
|
|||||||
| Protein seq | MNKFVGYPRLVCFHIFAVLVWLYSWARVHIPSGSYRIDITRAILCAPKIRTVYSQCLQSNTRGSGWLAALPTRATCMKPQMWRPWHNTVRLTDLNDNGPNSVSGCGIFFFLLKKNSLIQTDDFFFHKI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 35482134 | 35484419 | - | OsNip_03t0844100-02 | OsNip_03t0844100-02,OsNip_03t0844100-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.885533 | 0.846778 | 6.231513 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62700 | RBH | 1.140988 | 1.063445 | 1.444148 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0844100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041770 | RBH | 0.854426 | 7.077593 | 7.573388 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041470 | RBH | 0.354957 | 1.270101 | 1.481694 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041520 | RBH | 2.493493 | 18.749624 | 12.004536 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041760 | RBH | 0.196703 | 0.478840 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0041300 | RBH | 3.528658 | 18.769899 | 17.627325 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0606700 | RBH | 13.245356 | 32.254431 | 15.4094035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041030 | RBH | 0.326142 | 1.154733 | 1.252717 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0608500 | RBH | 21.4510535 | 32.8675175 | 19.0840345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041590 | RBH | 0.235608 | 0.166498 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041520 | RBH | 0.615180 | 16.936682 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041210 | RBH | 0.000000 | 44.950642 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0041290 | RBH | 0.991884 | 1.925045 | 1.519853 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0041320 | RBH | 0.564040 | 14.469180 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G041090 | RBH | 0.685490 | 6.292533 | 2.792469 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040760 | RBH | 1.905643 | 21.269756 | 7.024315 |
