Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0839700 | OGI:03098630 | 2/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:35303778-35305155 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGTCGAAGCTCGATGACCGGCTCCAGTACCCGTCAGCTGAAGTGTCCATGGTCTGTTCAGTGCTGCAGTGCGAGAGGGTGTCATCCTCCACGCCCAGCAACGCGAGGTTCAGGTGTGACTGCATGTTTGAGTCAGGAGCCGCCACAGCCTCCTCGTCTGATCCGTCGAAGCTCGCGGTGACGTGGGACCTTGCCCAGTGGTCAGTGGATCGTTTCGTCATCTCCTTCAAGCAGTTTCAAAATCTGTGTTGCCAGAACATAGCAAGTTGAGGTCAATCATCAAGACATTTTTTAAGTATTTTGCACATGTAATTTGTTCAGGTTCTTACCTGTGACATTTCCGGTCGGGAATGAGAAGATGTCCTTGTGCATAGCAAGGCTGCAAGAGTCAGTCATCAGCTAAAGAATGGAGGCCTAATCCAACATCATCCTCTCCATTTCGTCACAGTCATAATCATTTCCCAAGAATGGATCAACCAATTGTTTAATTTCCCCACTTGATAGTAATGGCTTTGCCTGAAACCGTCAACATAGAATTAGCAAAAAGAAAAAATAATTAATAACTTGCTCGTGCAAGAGTGCTTGTGTGGTCAACAGAGCAAAAAATGCAGCAAAAAATTCCAACAGTGCGTGAACGTGCAACTACCATTTTGTTCTTGGCTCAGGGCATGTTACTGCTCAGAGCAAGCCAGCTAGGCATATATGGGGTTAAGGATCACTCACCCATCCAACCAGGCTTTCCTGACCCTTTGCACATCCTGTTCTAATATGTCTTCTTCCTGAAATAATCTCCAGAACCAGAATTACAACTCCAAATGCATAGACATCAATTTTCTCATTGACCTTCCCGTGCGAAAAATACTCGGGAGCCAAGTATCTGTCACTGGAGTAGTTTGCTTAGGCATTTCACACTTGACAAAAGTAGCAATAGCAGGTAAAAATAGCATAGAGATGGTACTTACCCAAAAGTTCCCGTGATGTCAGTACATGTTAGGCGGGGAGTTGAAGCTGACACTTGCTTTGCCAACCCAAAATCACAAAGCTGGAAATTTCAAAAGAGATGATGTCATAAGCAGAATCAAAATTAACTAGTAAGGCTACCAAATACTCAATGCAATTCGTCACTGCTAACGCATTAAGACACTTGCTTTGATCTGAAAATAAATATTTACTGTACTGAGATTGCTTCAGGTATTTCAGTATTTGCAAATCTCTTGTGATTATTTACCTGTGCCTGAAAATCCTCTGAGAGGAGGATATTCGAAGACTTAACATCTCCATGAATCACAGATTGGGTGATACTTCCATTATGTAGATATTCAAGTGCCTTTGCTATGCCAATTGCTATTTTGAAGACCTCACCTGCCACTGGTGCTGC
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| CDS seq | GCAGCACCAGTGGCAGGTGAGGTCTTCAAAATAGCAATTGGCATAGCAAAGGCACTTGAATATCTACATAATGGAAGTATCACCCAATCTGTGATTCATGGAGATGTTAAGTCTTCGAATATCCTCCTCTCAGAGGATTTTCAGGCACAGCTTTGTGATTTTGGGTTGGCAAAGCAAGTGTCAGCTTCAACTCCCCGCCTAACATGTACTGACATCACGGGAACTTTTGGATACTTGGCTCCCGAGTATTTTTCGCACGGGAAGGTCAATGAGAAAATTGATGTCTATGCATTTGGAGTTGTAATTCTGGTTCTGGAGATTATTTCAGGAAGAAGACATATTAGAACAGGATGTGCAAAGGGTCAGGAAAGCCTGGTTGGATGGGCAAAGCCATTACTATCAAGTGGGGAAATTAAACAATTGGTTGATCCATTCTTGGGAAATGATTATGACTGTGACGAAATGGAGAGGATGATGTTGGATTAG
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| Protein seq | AAPVAGEVFKIAIGIAKALEYLHNGSITQSVIHGDVKSSNILLSEDFQAQLCDFGLAKQVSASTPRLTCTDITGTFGYLAPEYFSHGKVNEKIDVYAFGVVILVLEIISGRRHIRTGCAKGQESLVGWAKPLLSSGEIKQLVDPFLGNDYDCDEMERMMLD |
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| Function | Receptor-like cytosolic serine/threonine-protein kinase RBK1 [UniProtKB/Swiss-Prot:Q8H1D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0839700 | OsNip_03t0839700-00 | Chr03 | 35303778 | 35305155 | - | RAP2018-11-26 | ||
| CDS seq | GCAGCACCAGTGGCAGGTGAGGTCTTCAAAATAGCAATTGGCATAGCAAAGGCACTTGAATATCTACATAATGGAAGTATCACCCAATCTGTGATTCATGGAGATGTTAAGTCTTCGAATATCCTCCTCTCAGAGGATTTTCAGGCACAGCTTTGTGATTTTGGGTTGGCAAAGCAAGTGTCAGCTTCAACTCCCCGCCTAACATGTACTGACATCACGGGAACTTTTGGATACTTGGCTCCCGAGTATTTTTCGCACGGGAAGGTCAATGAGAAAATTGATGTCTATGCATTTGGAGTTGTAATTCTGGTTCTGGAGATTATTTCAGGAAGAAGACATATTAGAACAGGATGTGCAAAGGGTCAGGAAAGCCTGGTTGGATGGGCAAAGCCATTACTATCAAGTGGGGAAATTAAACAATTGGTTGATCCATTCTTGGGAAATGATTATGACTGTGACGAAATGGAGAGGATGATGTTGGATTAG
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| Protein seq | AAPVAGEVFKIAIGIAKALEYLHNGSITQSVIHGDVKSSNILLSEDFQAQLCDFGLAKQVSASTPRLTCTDITGTFGYLAPEYFSHGKVNEKIDVYAFGVVILVLEIISGRRHIRTGCAKGQESLVGWAKPLLSSGEIKQLVDPFLGNDYDCDEMERMMLD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0839900 | RBH | 3.301999 | 3.087689 | 5.545075 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62314 | RBH | 0.000000 | 0.000000 | 0.036105 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0839700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041440 | SBH | 0.418852 | 11.667038 | 4.706962 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041140 | SBH | 0.394232 | 3.998691 | 2.384464 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041200 | SBH | 1.557929 | 12.285553 | 7.464001 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041430 | SBH | 0.157230 | 0.540634 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040940 | SBH | 11.081797 | 29.926350 | 22.334873 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0602400 | RBH | 0.0088375 | 0.3833035 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040680 | SBH | 0.405112 | 2.582578 | 2.600571 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0605300 | SBH | 14.0384025 | 25.971095 | 22.7201235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041290 | SBH | 0.184542 | 0.163821 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041180 | SBH | 0.876514 | 16.551718 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0040870 | SBH | 3.667701 | 21.389053 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0040930 | SBH | 2.858339 | 3.407155 | 3.239599 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0040970 | SBH | 0.383537 | 12.850204 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040750 | SBH | 0.216134 | 6.523360 | 3.257468 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040460 | SBH | 0.916405 | 23.080227 | 7.043317 |
