Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0821200 | OGI:03096240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:34454495-34456741 | ||||||||
| Gene Symbol | DOF16, OsDof16, Dof16, OsDof-16 | ||||||||||
| DNA seq | ATCCATGCATCACACACACACACACACATGCTTATGAGCTAAGGAAACATCACTCTTCACCATTCAACTCCTCCCATGCATATGTTTCACAACCCAATATATATAATGCAAGCACACCACTAAGACACAAAAAAATAAAGGAAAATAAAGGGGTGGCAAGCCCCCCTTCTCCCTTTTATTCCCTCTCCCTTTCATTCCCTCTCACCCCAATCTCTTTCCCTTTCTCTAGCTTCCCTCCTCTCTTCATTCTCCTCCTCCTCCTCCTCCTCTCTTTGTACCAGCTAACTCATCACCACGCAGGCCAGAGTAGTAGTAGTAGTGATATAGTTTCTCTCTTCTCACAAGCAGCTCAGCTCAGCTAGATTAGATAGAGCTCACACACAATTTCCAGCTTGCTAGTGGGTGTGTTATTCGCCGCCTTTTATCGATCCGCCTCCCCATCCTTGCATGATCCTGGGCCTAAAGCAGCTATATACCCTTATCTCACAAAGAAGAGAGGAGAGGAACAAACAAAACCCAAAAAAGAAGGCCCCAAGTAGGAAAAGATCAAAAGAAATCAATTCTATACCATGGTCTTTTCTTCGGTTCCGGCCGTCTATCTTGATCCACCCAATTGGAACCAGCAGGTGAAATTTTTTCTTGCTTGGCCAAGATCTTTTTTTGCTCTCTCCTTTCTTTCTTTTTTATGTAGGATGATGGCCATATATGTATGTATGTATGGCTTCTTCATGAAAAAAGCAAAACCAAATAAAATGCGCTGAGGAAATATTCCTACGCTCTTTTGAGAATTAAATCGATCTCTTGTTGAATATACCGTCTCGTCTTTTAGTTTGTGATCTTGATTTCTCGTCGCCTTTAATTCTCTTTCTTTGGTGCATGTGTGTACGTGTTTGATTTGGAATTAATGGTGGTGCTTTCAGCAACAGCAAGCTCACCACGGTCAGCTTCCAAGTGGCGGCAACGGCGGCGGCGGCGGCGGCGGCGGAGGTGGAGTGGACGCGCACCACCACCACCACCACCACCACCACCAGCTGCCGCCGATGCCGCCGCATCACGGCGGCCTCATGGCGCCTCGGCCTGACATGGTAGCAGCGGCCGTCGCGGCGAGCGGCGGCGGCGGTGGCGGCGGCGGCCCGACCGGCGGCACGGCGGTGCGGCCGGGCTCGATGACGGAACGGGCTCGGCTGGCGAAGATCCCGCAGCCGGAGCCGGGGCTCAAGTGCCCGCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACTCGCTCTCGCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGCTACTGGACGCGCGGCGGAGCGCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGCCGCAACAAGCGCACCAAGTCGTCCAAGTCGTCCTCGTCGACGTCGGCCGCCGGCTCGGCCTCCGCCACCGGCGGCACGTCGTCGTCCACATCGTCGACCGCCACGGGTGGCAGCAGCAGCGCCGCGGCGGCCGCGGCGATGATGCCGCCGCAGGCGCAGCTGCCGTTCCTGGCCTCGTTGCACCACCCGCTCGGCGGCGGCGATCACTACAGCTCCGGTGCGTCCAGGCTAGGGTTTCCCGGATTGAGCTCGCTGGATCCCGTCGACTACCAGCTCGGCGGCGGCGCCGCCGCCGCCGCCGCCATCGGGCTAGAGCAGTGGCGCCTCCCGCAGATACAGCAATTCCCCTTCTTGAGCCGCAACGACGCCATGCCGCCGCCAATGTCCGGCATTTACCCGTTCGACGCGGAGGCCGCCGCCGACGCCGCCGGCTTCGCCGGCCAGTTGCTGGCCGGCACCAAGGTGCCCGGCTCGTCGGGCCTGATCACGCAGCTCGCATCCGTCAAGATGGAGGACAGCAACGCTCAGTCCGCGGCGATGAACAGCTCGCCGAGGGAGTTCTTGGGCCTCCCCGGCAACCTCCAATTCTGGGGCGGTGGCAACGGCGCGGGACCCGGCGGCAATGGAGACGGCGCCACCGGCGGCAGCGGCGCCGGTGTCGCTCCGGGAGGCGGCGGCAGCGGCGGCGGATGGGCTGATCTCTCCGGATTCAACTCGTCGTCGTCGGGGAACATACTGTGACACGACGCATTTGCCGGCGAAATGGATGATGGAATGGATCAATGCTGCAAAAGAGGTAGAACCCTAACGAGCCCTGAAGCTTAATTTTAGTCATGGCTTCTCTGAGAAAGATCAAAGGAGAATTAAGGAGTTGTGTGTG
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| CDS seq | ATGGTCTTTTCTTCGGTTCCGGCCGTCTATCTTGATCCACCCAATTGGAACCAGCAGCAACAGCAAGCTCACCACGGTCAGCTTCCAAGTGGCGGCAACGGCGGCGGCGGCGGCGGCGGCGGAGGTGGAGTGGACGCGCACCACCACCACCACCACCACCACCACCAGCTGCCGCCGATGCCGCCGCATCACGGCGGCCTCATGGCGCCTCGGCCTGACATGGTAGCAGCGGCCGTCGCGGCGAGCGGCGGCGGCGGTGGCGGCGGCGGCCCGACCGGCGGCACGGCGGTGCGGCCGGGCTCGATGACGGAACGGGCTCGGCTGGCGAAGATCCCGCAGCCGGAGCCGGGGCTCAAGTGCCCGCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACTCGCTCTCGCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGCTACTGGACGCGCGGCGGAGCGCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGCCGCAACAAGCGCACCAAGTCGTCCAAGTCGTCCTCGTCGACGTCGGCCGCCGGCTCGGCCTCCGCCACCGGCGGCACGTCGTCGTCCACATCGTCGACCGCCACGGGTGGCAGCAGCAGCGCCGCGGCGGCCGCGGCGATGATGCCGCCGCAGGCGCAGCTGCCGTTCCTGGCCTCGTTGCACCACCCGCTCGGCGGCGGCGATCACTACAGCTCCGGTGCGTCCAGGCTAGGGTTTCCCGGATTGAGCTCGCTGGATCCCGTCGACTACCAGCTCGGCGGCGGCGCCGCCGCCGCCGCCGCCATCGGGCTAGAGCAGTGGCGCCTCCCGCAGATACAGCAATTCCCCTTCTTGAGCCGCAACGACGCCATGCCGCCGCCAATGTCCGGCATTTACCCGTTCGACGCGGAGGCCGCCGCCGACGCCGCCGGCTTCGCCGGCCAGTTGCTGGCCGGCACCAAGGTGCCCGGCTCGTCGGGCCTGATCACGCAGCTCGCATCCGTCAAGATGGAGGACAGCAACGCTCAGTCCGCGGCGATGAACAGCTCGCCGAGGGAGTTCTTGGGCCTCCCCGGCAACCTCCAATTCTGGGGCGGTGGCAACGGCGCGGGACCCGGCGGCAATGGAGACGGCGCCACCGGCGGCAGCGGCGCCGGTGTCGCTCCGGGAGGCGGCGGCAGCGGCGGCGGATGGGCTGATCTCTCCGGATTCAACTCGTCGTCGTCGGGGAACATACTGTGA
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| Protein seq | MVFSSVPAVYLDPPNWNQQQQQAHHGQLPSGGNGGGGGGGGGGVDAHHHHHHHHHQLPPMPPHHGGLMAPRPDMVAAAVAASGGGGGGGGPTGGTAVRPGSMTERARLAKIPQPEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSSKSSSSTSAAGSASATGGTSSSTSSTATGGSSSAAAAAAMMPPQAQLPFLASLHHPLGGGDHYSSGASRLGFPGLSSLDPVDYQLGGGAAAAAAIGLEQWRLPQIQQFPFLSRNDAMPPPMSGIYPFDAEAAADAAGFAGQLLAGTKVPGSSGLITQLASVKMEDSNAQSAAMNSSPREFLGLPGNLQFWGGGNGAGPGGNGDGATGGSGAGVAPGGGGSGGGWADLSGFNSSSSGNIL |
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| Function | Dof zinc finger protein DOF3.6 [UniProtKB/Swiss-Prot:Q9M2U1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0821200 | OsNip_03t0821200-00 | Chr03 | 34454495 | 34456741 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTCTTTTCTTCGGTTCCGGCCGTCTATCTTGATCCACCCAATTGGAACCAGCAGCAACAGCAAGCTCACCACGGTCAGCTTCCAAGTGGCGGCAACGGCGGCGGCGGCGGCGGCGGCGGAGGTGGAGTGGACGCGCACCACCACCACCACCACCACCACCACCAGCTGCCGCCGATGCCGCCGCATCACGGCGGCCTCATGGCGCCTCGGCCTGACATGGTAGCAGCGGCCGTCGCGGCGAGCGGCGGCGGCGGTGGCGGCGGCGGCCCGACCGGCGGCACGGCGGTGCGGCCGGGCTCGATGACGGAACGGGCTCGGCTGGCGAAGATCCCGCAGCCGGAGCCGGGGCTCAAGTGCCCGCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACTCGCTCTCGCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGCTACTGGACGCGCGGCGGAGCGCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGCCGCAACAAGCGCACCAAGTCGTCCAAGTCGTCCTCGTCGACGTCGGCCGCCGGCTCGGCCTCCGCCACCGGCGGCACGTCGTCGTCCACATCGTCGACCGCCACGGGTGGCAGCAGCAGCGCCGCGGCGGCCGCGGCGATGATGCCGCCGCAGGCGCAGCTGCCGTTCCTGGCCTCGTTGCACCACCCGCTCGGCGGCGGCGATCACTACAGCTCCGGTGCGTCCAGGCTAGGGTTTCCCGGATTGAGCTCGCTGGATCCCGTCGACTACCAGCTCGGCGGCGGCGCCGCCGCCGCCGCCGCCATCGGGCTAGAGCAGTGGCGCCTCCCGCAGATACAGCAATTCCCCTTCTTGAGCCGCAACGACGCCATGCCGCCGCCAATGTCCGGCATTTACCCGTTCGACGCGGAGGCCGCCGCCGACGCCGCCGGCTTCGCCGGCCAGTTGCTGGCCGGCACCAAGGTGCCCGGCTCGTCGGGCCTGATCACGCAGCTCGCATCCGTCAAGATGGAGGACAGCAACGCTCAGTCCGCGGCGATGAACAGCTCGCCGAGGGAGTTCTTGGGCCTCCCCGGCAACCTCCAATTCTGGGGCGGTGGCAACGGCGCGGGACCCGGCGGCAATGGAGACGGCGCCACCGGCGGCAGCGGCGCCGGTGTCGCTCCGGGAGGCGGCGGCAGCGGCGGCGGATGGGCTGATCTCTCCGGATTCAACTCGTCGTCGTCGGGGAACATACTGTGA
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| Protein seq | MVFSSVPAVYLDPPNWNQQQQQAHHGQLPSGGNGGGGGGGGGGVDAHHHHHHHHHQLPPMPPHHGGLMAPRPDMVAAAVAASGGGGGGGGPTGGTAVRPGSMTERARLAKIPQPEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSSKSSSSTSAAGSASATGGTSSSTSSTATGGSSSAAAAAAMMPPQAQLPFLASLHHPLGGGDHYSSGASRLGFPGLSSLDPVDYQLGGGAAAAAAIGLEQWRLPQIQQFPFLSRNDAMPPPMSGIYPFDAEAAADAAGFAGQLLAGTKVPGSSGLITQLASVKMEDSNAQSAAMNSSPREFLGLPGNLQFWGGGNGAGPGGNGDGATGGSGAGVAPGGGGSGGGWADLSGFNSSSSGNIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.057346 | 0.149170 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0236700 | RBH | 0.0 | 0.408035 | 0.568776 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60630 | RBH | 0.0 | 0.054783 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0821200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0040020 | RBH | 0.0 | 0.0 | 0.345607 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0039700 | RBH | 0.057715 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039760 | RBH | 0.0 | 0.0 | 0.373905 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0040010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039550 | RBH | 0.0 | 0.0 | 0.505894 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0587700 | RBH | 0.842608 | 3.809448 | 2.1709195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0039300 | RBH | 0.0 | 0.0 | 0.062437 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0590100 | RBH | 0.921295 | 3.40929 | 4.246675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039550 | RBH | 0.070204 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039600 | RBH | 0.000000 | 2.165035 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039370 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0039110 | RBH | 0.0 | 0.000000 | 0.000000 |
