Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0795200 | OGI:03092820 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:33078797-33080790 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTGGCCTCTCGTCCTCACTCCATAACGGCCATGTCGTCCTCGCCTCTAACCGCCACGCCTTCCCCTCTCCTTCCCGCCAAATCCAAGAACCCACCACCCCACCACCACCACCACAACCCGCTCCTCGCCTACCTCCCGCACTGCACGAGCCTCCGCGCGCTCGCGCAGCTCCACGCCGTCGCCGTCAAGGCCGGCGGCGGCCTCCAGGCGCACCCGGCCTTCGTCACGAGGCTCCTCACGCTCTGCACGGAGCAGGGGGCGGAGGCGCCCGCGCACCTCGCGTACGCGCGCCAGGTGTTCGACAGAATCCCCCACCCGGGCGACGTCGTCTGGTACAACACGCTGCTGCGCGGGTACGCGCGCGGGGGTGGGGGCGGGGGCGGCGCGGAGGAGGCCGCGCGGGTGTTCGTCCGGATGATGGAGGAGGGGGTGGCGCCCGACACGTACACGTTCGTGTCGCTGCTCAAGGCGTGCGCGTCCGCGCGGGCCGGCGAGGAAGGGCGGCAGGCGCACGGCGTGGCGGTCAAGGCCGGCGCCGCGGAGCACGAGTACGTCGCGCCCACGCTGATCAACATGTACGCCGAGTGCGGGGACGTGCGCGCCGCGCGCGTGATGTTCGACAGGATGGACGGGGAGTGCGTCGTCTCGTACAATGCCATGATCACCGCGTCCGTCAGGAGCAGCCTGCCCGGCGAGGCGCTGGTGCTGTTCCGGGAGATGCAGGCCAAGGGGCTCAAGCCGACGTCCGTGACGTTGATTAGTGTGCTCTCGGCGTGCGCATTGCTCGGAGCTCTGGAACTTGGGAGGTGGATCCACGACTATATCAGGAAGATGAGGCTTGATTCACTTGTGAAGGTCAACACTGCGCTGATCGACATGTATGCGAAGTGTGGGAGCTTGGAGGATGCCATTGGCGTGTTCCAGGATATGGAATCAAGGGATAAACAAGCTTGGTCTGTGATGATGGTGGCATATGCTAACCATGGCTATGGCAGAGAGGCCATTTCAATGTTCGAAGAGATGAAGAAACAAGGTATGAAACCTGATGATGTTACATTCCTTGGGGTGCTCTATGCCTGCAGCCACTCTGGTATGGTGAGCGAAGGGCTCCAATACTTTGACAGCATGAGGGAATATGGCATTGTTTCAGGGATCAAGCACTATGGTTGTGTGACTGATTTGCTGGCTCGATCAGGTCAGCTAGAAAGGGCTTACAAGTTCATTGATGAACTGCCAATAAAACCAACTGCCATCTTATGGAGGACGCTGCTTTCTGCTTGTGCGGGTCATGGAGATGTCGATATGGGAAAACGTGTCTTTGAGAGGATTCTGGAGCTGGATGATTCTCATGGTGGTGACTATGTAATATTCTCAAATTTGTGTGCCAATACTGGGAGATGGGAAGAGATGAACATGGTAAGGAAGCTTATGAGTGAAAAGGGGGTGGTGAAGGTGCCAGGGTGTAGCTCAATTGAGATAGATAACATGGTTCATGAGTTCTTCGCAGGAGATGGAAGTCACCCACACTCACAGGAGGCACGCAGAATGGTTGATGAAGTTATTGAGCAGCTAAAACTTGTCGGTTATGTCCCTAATACTTCACATGTGTTTCATGTTGAAATGGGTGAGGAGGAGAAAGCAACAAGCCTAAGATACCATAGTGAGAAGCTGGCAATCTCTTTTGGGCTTCTAAATACAGCACCGGGAACTACCCTTCGTATTGTTAAGAATCTTCGTGTGTGTCCAGATTGCCATTCGATGGCAAAGCTTGTTTCTATGGTCTTTAACAGGCGAATCATACTCAGAGACCTAAATCGTTTCCACCACTTTGAAGATGGGGTCTGCTCTTGTGGTGACTACTGGTAGAGTTTAGGAACATAACTGCTGTACCAAAATACCTTATCCTTCCAGTAACACAAAGGCTTTATCCATTCAGGTATGATTAACTTGTACACCCATGAGAAACTTACTGATGATTGAAGATTCATTTTCT
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| CDS seq | ATGTCGTCCTCGCCTCTAACCGCCACGCCTTCCCCTCTCCTTCCCGCCAAATCCAAGAACCCACCACCCCACCACCACCACCACAACCCGCTCCTCGCCTACCTCCCGCACTGCACGAGCCTCCGCGCGCTCGCGCAGCTCCACGCCGTCGCCGTCAAGGCCGGCGGCGGCCTCCAGGCGCACCCGGCCTTCGTCACGAGGCTCCTCACGCTCTGCACGGAGCAGGGGGCGGAGGCGCCCGCGCACCTCGCGTACGCGCGCCAGGTGTTCGACAGAATCCCCCACCCGGGCGACGTCGTCTGGTACAACACGCTGCTGCGCGGGTACGCGCGCGGGGGTGGGGGCGGGGGCGGCGCGGAGGAGGCCGCGCGGGTGTTCGTCCGGATGATGGAGGAGGGGGTGGCGCCCGACACGTACACGTTCGTGTCGCTGCTCAAGGCGTGCGCGTCCGCGCGGGCCGGCGAGGAAGGGCGGCAGGCGCACGGCGTGGCGGTCAAGGCCGGCGCCGCGGAGCACGAGTACGTCGCGCCCACGCTGATCAACATGTACGCCGAGTGCGGGGACGTGCGCGCCGCGCGCGTGATGTTCGACAGGATGGACGGGGAGTGCGTCGTCTCGTACAATGCCATGATCACCGCGTCCGTCAGGAGCAGCCTGCCCGGCGAGGCGCTGGTGCTGTTCCGGGAGATGCAGGCCAAGGGGCTCAAGCCGACGTCCGTGACGTTGATTAGTGTGCTCTCGGCGTGCGCATTGCTCGGAGCTCTGGAACTTGGGAGGTGGATCCACGACTATATCAGGAAGATGAGGCTTGATTCACTTGTGAAGGTCAACACTGCGCTGATCGACATGTATGCGAAGTGTGGGAGCTTGGAGGATGCCATTGGCGTGTTCCAGGATATGGAATCAAGGGATAAACAAGCTTGGTCTGTGATGATGGTGGCATATGCTAACCATGGCTATGGCAGAGAGGCCATTTCAATGTTCGAAGAGATGAAGAAACAAGGTATGAAACCTGATGATGTTACATTCCTTGGGGTGCTCTATGCCTGCAGCCACTCTGGTATGGTGAGCGAAGGGCTCCAATACTTTGACAGCATGAGGGAATATGGCATTGTTTCAGGGATCAAGCACTATGGTTGTGTGACTGATTTGCTGGCTCGATCAGGTCAGCTAGAAAGGGCTTACAAGTTCATTGATGAACTGCCAATAAAACCAACTGCCATCTTATGGAGGACGCTGCTTTCTGCTTGTGCGGGTCATGGAGATGTCGATATGGGAAAACGTGTCTTTGAGAGGATTCTGGAGCTGGATGATTCTCATGGTGGTGACTATGTAATATTCTCAAATTTGTGTGCCAATACTGGGAGATGGGAAGAGATGAACATGGTAAGGAAGCTTATGAGTGAAAAGGGGGTGGTGAAGGTGCCAGGGTGTAGCTCAATTGAGATAGATAACATGGTTCATGAGTTCTTCGCAGGAGATGGAAGTCACCCACACTCACAGGAGGCACGCAGAATGGTTGATGAAGTTATTGAGCAGCTAAAACTTGTCGGTTATGTCCCTAATACTTCACATGTGTTTCATGTTGAAATGGGTGAGGAGGAGAAAGCAACAAGCCTAAGATACCATAGTGAGAAGCTGGCAATCTCTTTTGGGCTTCTAAATACAGCACCGGGAACTACCCTTCGTATTGTTAAGAATCTTCGTGTGTGTCCAGATTGCCATTCGATGGCAAAGCTTGTTTCTATGGTCTTTAACAGGCGAATCATACTCAGAGACCTAAATCGTTTCCACCACTTTGAAGATGGGGTCTGCTCTTGTGGTGACTACTGGTAG
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| Protein seq | MSSSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At2g02980, chloroplastic [UniProtKB/Swiss-Prot:Q8LK93] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0795200 | OsNip_03t0795200-01 | Chr03 | 33078797 | 33080790 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCGTCCTCGCCTCTAACCGCCACGCCTTCCCCTCTCCTTCCCGCCAAATCCAAGAACCCACCACCCCACCACCACCACCACAACCCGCTCCTCGCCTACCTCCCGCACTGCACGAGCCTCCGCGCGCTCGCGCAGCTCCACGCCGTCGCCGTCAAGGCCGGCGGCGGCCTCCAGGCGCACCCGGCCTTCGTCACGAGGCTCCTCACGCTCTGCACGGAGCAGGGGGCGGAGGCGCCCGCGCACCTCGCGTACGCGCGCCAGGTGTTCGACAGAATCCCCCACCCGGGCGACGTCGTCTGGTACAACACGCTGCTGCGCGGGTACGCGCGCGGGGGTGGGGGCGGGGGCGGCGCGGAGGAGGCCGCGCGGGTGTTCGTCCGGATGATGGAGGAGGGGGTGGCGCCCGACACGTACACGTTCGTGTCGCTGCTCAAGGCGTGCGCGTCCGCGCGGGCCGGCGAGGAAGGGCGGCAGGCGCACGGCGTGGCGGTCAAGGCCGGCGCCGCGGAGCACGAGTACGTCGCGCCCACGCTGATCAACATGTACGCCGAGTGCGGGGACGTGCGCGCCGCGCGCGTGATGTTCGACAGGATGGACGGGGAGTGCGTCGTCTCGTACAATGCCATGATCACCGCGTCCGTCAGGAGCAGCCTGCCCGGCGAGGCGCTGGTGCTGTTCCGGGAGATGCAGGCCAAGGGGCTCAAGCCGACGTCCGTGACGTTGATTAGTGTGCTCTCGGCGTGCGCATTGCTCGGAGCTCTGGAACTTGGGAGGTGGATCCACGACTATATCAGGAAGATGAGGCTTGATTCACTTGTGAAGGTCAACACTGCGCTGATCGACATGTATGCGAAGTGTGGGAGCTTGGAGGATGCCATTGGCGTGTTCCAGGATATGGAATCAAGGGATAAACAAGCTTGGTCTGTGATGATGGTGGCATATGCTAACCATGGCTATGGCAGAGAGGCCATTTCAATGTTCGAAGAGATGAAGAAACAAGGTATGAAACCTGATGATGTTACATTCCTTGGGGTGCTCTATGCCTGCAGCCACTCTGGTATGGTGAGCGAAGGGCTCCAATACTTTGACAGCATGAGGGAATATGGCATTGTTTCAGGGATCAAGCACTATGGTTGTGTGACTGATTTGCTGGCTCGATCAGGTCAGCTAGAAAGGGCTTACAAGTTCATTGATGAACTGCCAATAAAACCAACTGCCATCTTATGGAGGACGCTGCTTTCTGCTTGTGCGGGTCATGGAGATGTCGATATGGGAAAACGTGTCTTTGAGAGGATTCTGGAGCTGGATGATTCTCATGGTGGTGACTATGTAATATTCTCAAATTTGTGTGCCAATACTGGGAGATGGGAAGAGATGAACATGGTAAGGAAGCTTATGAGTGAAAAGGGGGTGGTGAAGGTGCCAGGGTGTAGCTCAATTGAGATAGATAACATGGTTCATGAGTTCTTCGCAGGAGATGGAAGTCACCCACACTCACAGGAGGCACGCAGAATGGTTGATGAAGTTATTGAGCAGCTAAAACTTGTCGGTTATGTCCCTAATACTTCACATGTGTTTCATGTTGAAATGGGTGAGGAGGAGAAAGCAACAAGCCTAAGATACCATAGTGAGAAGCTGGCAATCTCTTTTGGGCTTCTAAATACAGCACCGGGAACTACCCTTCGTATTGTTAAGAATCTTCGTGTGTGTCCAGATTGCCATTCGATGGCAAAGCTTGTTTCTATGGTCTTTAACAGGCGAATCATACTCAGAGACCTAAATCGTTTCCACCACTTTGAAGATGGGGTCTGCTCTTGTGGTGACTACTGGTAG
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| Protein seq | MSSSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.832128 | 1.888040 | 0.542030 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0191500 | RBH | 3.449057 | 4.163008 | 0.435293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g58100 | RBH | 1.223202 | 1.296238 | 0.153591 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0795200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0037990 | RBH | 0.822234 | 0.0 | 0.796810 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037680 | RBH | 0.450152 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037730 | RBH | 2.198240 | 1.094481 | 0.650070 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0038040 | RBH | 0.059428 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0037560 | RBH | 3.430682 | 0.000000 | 3.461622 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0565400 | RBH | 6.825894 | 2.427374 | 3.475839 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0037350 | RBH | 0.548280 | 0.079013 | 0.242847 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0567100 | RBH | 1.7312945 | 1.1958805 | 0.2972075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0037890 | RBH | 0.103555 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037890 | RBH | 0.463306 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0037500 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0037560 | RBH | 0.413289 | 0.178746 | 0.261122 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037580 | RBH | 0.624538 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037360 | RBH | 0.181258 | 0.000000 | 0.551260 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0037140 | RBH | 2.104459 | 1.957925 | 0.387478 |
