Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0780900 | OGI:03090570 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:32379925-32383791 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCGAAACTTCCCAATTTTCATTAATATATAAACACAAGTGTCCCGCATTTGGCTACATTGCAAAAGGGCGAAGCCCACACTACGAAAGCTGCCCTAGATACAAGGAGGCTAAAAGGCGAAGGGCCTCACACCTCTGGGTGATCTGGGCCAGCTGCGTCAGCTTCACCGTCGCCAGCTTTGGGCTCCTCCGCGGCTTCTTCCGCTTCGCGTTGAGCCTTCGCGCTCTTCTCCAGTTGGTCGCGGAGATAGCCCTTAGCGATGGTTCACCCCTCCTTCTGCCAGTACTCTTTTCGCCAAGCGCGAAGAGTAGTAGAGATGGGGTACGACTTCTCCGGCCAATCTCCCTTGACGAACTCCGGGAATTGGGCGACATGTTCGCACCCATTTTCCTGGAGCACCCCAAGCACGAAAGCCGCCGAAACCCGAGCACAACAATCACCATAATTGCTGCCGGTCTCAGCCACGGCACCTCCGGCTTGTTGTGTCCATTCCGAGAAGTCCAGCGCGGAAGCATTTTTGCCTGGAACGCCTTTGGCCTGGGCGCCCAACTCATGAAGGGCAAGCCGGAGAGTATAGCTGGCCGACTTGGCCGAATCTGTAATCTCAGCAACGGAGCGGGCAGACTCTTTCGCCGTGGTTTCGGCTGCGGCCTTTGCCTAGTCCAGCTCCTGGCGAAGGCTGTTCATCTTCCCCTCGGACGAATTGTAGTAGTCCAAGAGGGTAGCGTTCTGGTGCTTCGCCTTCTCCAGTTCCTCCTTTAGTTTTTTGTTTTCGGCCTTAGCCTGCCTTAGGGATTCGGCCACCACCTCTCGCTCCTGGTTTTTTCGACCAAGGTCTCCCTCGAGCCGACGTAGACGGTCCTTGTACCCGTCGAGGCGGGCCCGAACGGACTGCTCCATGTTGCAGTGGGCTAAAAGTGCCTAGCGAAGAGAAAGGGGGAGCAAAAAAGTTAGCAAGAAACATTAAAGTTTTGAGCGCATCCAAAGCAATTTAGAGCAAAGAACGTACCCGAACGAGTAACCGCTGTGCATCCCTCATCAAACTCGTTTAGCTCGGTAAATGGGCTAGGCCCGCTAGCCGGCGAAACAAGTTGACTCACCCCTCTGACAAAGGGGATGAGCTCCAAGCGGGTCTCGAAATCCGCCGGGACAAAGCGAGGGACTGACAACGAATTGTTGTCGGAGACGGATTTCTCAACGGCTGAAACGGGAAATGATATTTTACTCTTTTTGTTTTGAATAAGACGAATGGTCAAACGTCATGTGAAAAATCAACAACATCATACATTTTGAAATGGAGGGAGTAGTATGTTACAACAGCATCCAATAATCCAGCAGCAAGTGAAAAAAAATCAATTTAGCCACAGTAAAACTGTGCCTATTCAAATTGAAATGTACACCAAACAAAAATGAATGTGCAAAATTCGAGACAGACATTTAGCAATACATTGCCAGACAGTGTAATAACCCATCTAATATGGGGGATTTTAAGAGCGGATCATACGGGGTGAATTTTTAGGGCGCCTTCTCTTCCCATTTTTTTGAATTTTCGGCTTTTCAGTCACCAATGCATACATTTTAACAGCAAATAATTCCTTTGGAAGGTCGCTCTGGTCCTGTTATAATTGCAAGATTAGATGATTTACAGGGAAAATATGAAGTTTGTAATTGAAAATTGCAATTTTATGACATGCATACCTTAATGCTATGGATATATAAACCACATTTTTTAAATAGCTCCTTGAAGTACGCATCAGATCTAGTGATACTGTTATCCTCCTTGTCCAAAACAAATCCTGAAAGTGCAGTACCTCATATTAATTCCCAAATAAGTACGATGTTAAATCTCTCAAAAAGTATACGCAGTAATCAGACAAACCATTTGATACAGTGACTCACCGTTTCTTGCAATATTCTCCTTCAGTACAAAAAATCCATTGGGTTTGAGCCCAATCTGGAAGCAATATTACCAATCCAAACTTAATTAGAATGCGTAGAGATGGAATATCTTAATTCGGATTTTATCACTACTAATAATAAGTGCAGAAACATGAATATTGATATTTTTCATTCGATAAAATTAGAAATAGGCTGAAAATAAAGACTCGAAGACCAGAAATACTACTTGGCATGGATTTAGAACAAAGTATCGGCATCCAACTAGCAGTAAACTCCCTCAAAATAAATATAGCAGTGCAACAGACATAATTATCAAGGTAGAAGTGGTAGCATCATTGATCAACTGGACAGGTATTTGCAGATAGTATATAGTAACAAACAACTTTGTATTCATGCACAAGAAGAAGTTTATCTGTATCGAAGGGAAAAAAAAGACCAGTTTCCTTCTATAAAAATAATGGTATAATGCTATAGCATATATTAACATCTTTTTGCGCACAACAAAAATTTTAAATCTAACTGTCAAGCACAGATGAATACTTCAATACAAACAGAAACAAATCATTGTAACAGTAAAATTTACATAATATATGAATTAAATGCAGCACCTTTGCACGGTTAAAAAATGAAATAAAGTCATCATCAGGAAGTTGCCCTATGCACCACTGGATCCATATTACATCATATCTTCCTTCATCAGGAGTGAAATCCTAAGCAACAAATGAATGCTATTATAAGAAATGGAGTGGAAAACAGCACAAAGTATCAAACTTCAATTAACAATGATCTAAAGAAGTAGAGAAACCAACCTGAAGAGGTACACAATAAAAATTAGCAGCCTTATGTGTATCTTCCCCTACTTCCATACATTCAGTAAGATTTTCCTGTGCCGCTTCTAGAAAATGGGACACTGGCTCAACAAGATCAACCTGAGCACCCATTTCCAGTTTAAAACAAACCATTGGAAGATACAGACAAAGAACATCAACAATAAATATTACAGATAAAAAAGAACAAAAAATAGTACTCCTACTAGAGTTATGCTTGACTGGCAAAACAAAATGCATTGATTCTTGCCAATATATCATCATGTGGGTACTACAACAGCAGCTGCATGGACTGAAGATAACTCTATATGGTCTAACAATATCATGATACCGATAAGCATGTGAGCGTCCATGATTACAGTTACATCTCAAAGATTGTGAGAGAAACATACAGAGGCATACCTCGTTGAAATGCCTAAGAAGAAAATTCTTTGTAACCCTCCCGATGCCCGAGCCACAATCTGCCATAAATTCAGACATCAACCAAGTGGATCAAGCTGCATATCAGCACGGCGACGATTGTATATAGCTCTAGCACCGTGAACAGCCAAAAAGAATATCCTTCCACAGAAGTGAACTCACCGAGGGCGACGAGATGGCGCCTCGCGGCGCCGAATCGCTCGGCGAGGAGAGGACGGAGGAACGCGTCGCTGCCCTTGACGTCCACGTCGTTCACGCATCCGTACCCTCCAAGGACACCCTCGGTCGACGCCTCCACGCCCTAGCACACCCAAATCAAGAAAACTTGTAGCCGAATTCGCCGCGAGGAGACAATGCGCTCGGATTTGGGGGGGTTTAGGGTTTAGGGAGGAGGAGGAGGGAGTGAGTGAGCGCTCTTTACTTGCCAGTAGGCGATTGCCTTGGAGTACCACTCCTCCCGCTTCCCGCCGCCGCCTGCCTCCTCCTCGCCGGCGACCCCGTTGCTTCCGGCGGCGGGGGCCGGAGCGGGTTCGGCTACCGCGGCGGAGACCGGGGCATCCGCCGCGGCGCCGATTTCGTGCGCCCACATCTCGGTGGCGCTGGAGAATTCCCGGCCTTCGGAATCGAAGCCGCGGGAGTCCATCTCTCCGGCGGCGGCGGCGGCGGCGGCTTGCTTGCGCGCGAGCTTGGAGAAGCTGAGAAGGAAGGAAGAGAGAACGCC
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| CDS seq | ATGGACTCCCGCGGCTTCGATTCCGAAGGCCGGGAATTCTCCAGCGCCACCGAGATGTGGGCGCACGAAATCGGCGCCGCGGCGGATGCCCCGGTCTCCGCCGCGGTAGCCGAACCCGCTCCGGCCCCCGCCGCCGGAAGCAACGGGGTCGCCGGCGAGGAGGAGGCAGGCGGCGGCGGGAAGCGGGAGGAGTGGTACTCCAAGGCAATCGCCTACTGGCAAGGCGTGGAGGCGTCGACCGAGGGTGTCCTTGGAGGGTACGGATGCGTGAACGACGTGGACGTCAAGGGCAGCGACGCGTTCCTCCGTCCTCTCCTCGCCGAGCGATTCGGCGCCGCGAGGCGCCATCTCGTCGCCCTCGATTGTGGCTCGGGCATCGGGAGGGTTACAAAGAATTTTCTTCTTAGGCATTTCAACGAGGTTGATCTTGTTGAGCCAGTGTCCCATTTTCTAGAAGCGGCACAGGAAAATCTTACTGAATGTATGGAAGTAGGGGAAGATACACATAAGGCTGCTAATTTTTATTGTGTACCTCTTCAGGATTTCACTCCTGATGAAGGAAGATATGATGTAATATGGATCCAGTGGTGCATAGGGCAACTTCCTGATGATGACTTTATTTCATTTTTTAACCGTGCAAAGATTGGGCTCAAACCCAATGGATTTTTTGTACTGAAGGAGAATATTGCAAGAAACGGATTTGTTTTGGACAAGGAGGATAACAGTATCACTAGATCTGATGCGTACTTCAAGGAGCTATTTAAAAAATGTGGTTTATATATCCATAGCATTAAGGACCAGAGCGACCTTCCAAAGGAATTATTTGCTGTTAAAATGTATGCATTGGTGACTGAAAAGCCGAAAATTCAAAAAAATGGGAAGAGAAGGCGCCCTAAAAATTCACCCCCCGTTGAGAAATCCGTCTCCGACAACAATTCGTTGTCAGTCCCTCGCTTTGTCCCGGCGGATTTCGAGACCCGCTTGGAGCTCATCCCCTTTGTCAGAGGGGTGAGTCAACTTGTTTCGCCGGCTAGCGGGCCTAGCCCATTTACCGAGCTAAACGAGTTTGATGAGGGATGCACAGCGGTTACTCGTTCGGGCACTTTTAGCCCACTGCAACATGGAGCAGTCCGTTCGGGCCCGCCTCGACGGGTACAAGGACCGTCTACGTCGGCTCGAGGGAGACCTTGGTCGAAAAAACCAGGAGCGAGAGGTGGTGGCCGAATCCCTAAGGCAGGCTAA
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| Protein seq | MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGGKREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAARRHLVALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVPLQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNGFVLDKEDNSITRSDAYFKELFKKCGLYIHSIKDQSDLPKELFAVKMYALVTEKPKIQKNGKRRRPKNSPPVEKSVSDNNSLSVPRFVPADFETRLELIPFVRGVSQLVSPASGPSPFTELNEFDEGCTAVTRSGTFSPLQHGAVRSGPPRRVQGPSTSARGRPWSKKPGARGGGRIPKAG |
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| Function | Alpha N-terminal protein methyltransferase 1 [UniProtKB/Swiss-Prot:Q10CT5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0780900 | OsNip_03t0780900-01 | Chr03 | 32379925 | 32383791 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACTCCCGCGGCTTCGATTCCGAAGGCCGGGAATTCTCCAGCGCCACCGAGATGTGGGCGCACGAAATCGGCGCCGCGGCGGATGCCCCGGTCTCCGCCGCGGTAGCCGAACCCGCTCCGGCCCCCGCCGCCGGAAGCAACGGGGTCGCCGGCGAGGAGGAGGCAGGCGGCGGCGGGAAGCGGGAGGAGTGGTACTCCAAGGCAATCGCCTACTGGCAAGGCGTGGAGGCGTCGACCGAGGGTGTCCTTGGAGGGTACGGATGCGTGAACGACGTGGACGTCAAGGGCAGCGACGCGTTCCTCCGTCCTCTCCTCGCCGAGCGATTCGGCGCCGCGAGGCGCCATCTCGTCGCCCTCGATTGTGGCTCGGGCATCGGGAGGGTTACAAAGAATTTTCTTCTTAGGCATTTCAACGAGGTTGATCTTGTTGAGCCAGTGTCCCATTTTCTAGAAGCGGCACAGGAAAATCTTACTGAATGTATGGAAGTAGGGGAAGATACACATAAGGCTGCTAATTTTTATTGTGTACCTCTTCAGGATTTCACTCCTGATGAAGGAAGATATGATGTAATATGGATCCAGTGGTGCATAGGGCAACTTCCTGATGATGACTTTATTTCATTTTTTAACCGTGCAAAGATTGGGCTCAAACCCAATGGATTTTTTGTACTGAAGGAGAATATTGCAAGAAACGGATTTGTTTTGGACAAGGAGGATAACAGTATCACTAGATCTGATGCGTACTTCAAGGAGCTATTTAAAAAATGTGGTTTATATATCCATAGCATTAAGGACCAGAGCGACCTTCCAAAGGAATTATTTGCTGTTAAAATGTATGCATTGGTGACTGAAAAGCCGAAAATTCAAAAAAATGGGAAGAGAAGGCGCCCTAAAAATTCACCCCCCGTTGAGAAATCCGTCTCCGACAACAATTCGTTGTCAGTCCCTCGCTTTGTCCCGGCGGATTTCGAGACCCGCTTGGAGCTCATCCCCTTTGTCAGAGGGGTGAGTCAACTTGTTTCGCCGGCTAGCGGGCCTAGCCCATTTACCGAGCTAAACGAGTTTGATGAGGGATGCACAGCGGTTACTCGTTCGGGCACTTTTAGCCCACTGCAACATGGAGCAGTCCGTTCGGGCCCGCCTCGACGGGTACAAGGACCGTCTACGTCGGCTCGAGGGAGACCTTGGTCGAAAAAACCAGGAGCGAGAGGTGGTGGCCGAATCCCTAAGGCAGGCTAA
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| Protein seq | MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGGKREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAARRHLVALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVPLQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNGFVLDKEDNSITRSDAYFKELFKKCGLYIHSIKDQSDLPKELFAVKMYALVTEKPKIQKNGKRRRPKNSPPVEKSVSDNNSLSVPRFVPADFETRLELIPFVRGVSQLVSPASGPSPFTELNEFDEGCTAVTRSGTFSPLQHGAVRSGPPRRVQGPSTSARGRPWSKKPGARGGGRIPKAG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.059273 | 0.315995 | 0.511497 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56830 | RBH | 1.255302 | 0.209635 | 0.293821 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0780900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036930 | RBH | 0.596073 | 0.000000 | 2.800742 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036620 | RBH | 0.203268 | 0.000000 | 1.868277 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036680 | RBH | 1.332740 | 3.475066 | 3.403040 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036970 | RBH | 0.084255 | 0.186512 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0036460 | RBH | 7.031412 | 2.731879 | 1.155259 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0552100 | RBH | 4.273046 | 5.6102735 | 4.140863 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0036260 | RBH | 0.306188 | 0.235610 | 0.193717 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0553000 | RBH | 15.622432 | 3.4403705 | 11.7132265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036750 | RBH | 0.129998 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036760 | RBH | 0.000000 | 11.926569 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0036400 | RBH | 0.0 | 17.549469 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036490 | RBH | 0.332445 | 0.751088 | 0.726099 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0036450 | RBH | 0.274344 | 2.953746 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G036260 | RBH | 0.000000 | 5.379981 | 2.463432 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0036050 | RBH | 0.751974 | 10.945945 | 1.180600 |
