Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0756500 | OGI:03087670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:31226163-31230517 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATCTCACCTCATTATTTTCATCTGACATGGAAGTATCACCTATGACTTCTTCTGGGTCTTCTTCCTCTTCATCCATGTCATCTTCCCTTCCATTTGTTGGTGAATTATCTATATCCTCGACATCTGTTTCATACTCTGATTCCTCACTTTCACTCTTGGAATACTCATTCACCTGATGCTTGGGTACACTGGGAGAAGGAACAGCTTTCCCTACATTTGCCTGAAATCATGAACAAAAAAATATGGATAAATAGCAACAGGTTCATCAAAATAAGATGACTCTGTCACTGACCTTCTTTGCATTAGTTACGTGTCTCTTAGAAAGTGCTTCAGCCTCCAAGCTATCCTCAAAATGTGCATGGCCTGGGCCTCGGCGCTGATTATAACCAACACCAGGTGCCTCATCCTACAACCATCACAGAATTATGAATGCTTTTCCACCAAAATTTGCAGTTCCACACAACTTTATAGTGAATTGGAAGGCTGAGACTAGTTTTATGAAGGGTAATGTGGTGGTGTCTTTAAATTAGTTAAGAAAAACCCTAATACCATGTTTCAACCCATCTACAGACGCACACCCAACACTGACTACCTAGCTGTTTGCTGATTCCCATGCAGTTAGTTGACGAAATGGCCGTGGCTGTGGGAGGGCACAAAGGCAACCTCTGCAATTGGAAGCAATAGTTTTGTTGCAGCCGTTGATCGAATATGCTCATGGCCATGTAGTGAATATGAAATTTATATCTCAAACAGAAATTTGGCATGTCTATCTCGTTAAATGCAAGAGAGTTACTCAAACCTGGATGGCCAAATAAGTATACTTCAATATTGGTCACAGTGGAGAAAGAAAGAAGTATATCGGTCTACGTAGACAACATCATCTCTCACACGAGGGCCTGAGGTCAAGACCATTGACAGAAAAGCACGAGGGATTAGACATAATGGGCATAAATTTTAGGTTTTAGGCCATAACTGGTGGGTATCGGATCCTACGTTACTAATTTTCCCCAAGTAATAACTAAATAACCAATTGTATTAACTTTACAGATTTGTGCAAAATTATGGTGGAACAGGGTGGGAGCACCCTAATTGCAGCGTTACCTCTTAAATGAGCAAACTCAATACTAAGGCAAGAAACCAAACCTCCTCTAATGCATCTTCCAGAAAACCTGGGGTAAGCTTCCGCCTTTTCCTAAGAGGCTGACTGTATTTGCGCTTCACCTGTTCTCTTTTTCGTTGAAGACTTGAACTAGCTCGAATATTTTCTCCTTCAGCCTGTGTAAATCATATATCAGTATAAAGGACAAGTCATTCCATCAAAAAAAAAATTCAAGTCAAAAGATACAATTTAAACATAATGATAAAAGCAATATCACGATGGTTTGCATGTGTTTTCCTGTTCGGCTGCTTGTAACGCTGCTGTGCTGCAACAGCCGGAAGAAACAACACATTGAGCTTGTTGGCTGCACCACAGTGAAAATAATGGCAGCCGAACAGAGCCAATGAATGAAACAGTGATAAAATCCCAACATGGTATATAATATTTAGGCCACAAAAATGGGCCATGAATTATAGTTGTGTAGCCTAAAGAAACCTACCTGTACAGAACTTTTCTTTTGAATATCAGGTTGGAGCAACATTTTCAGAGCAAATCAAATAATTAGAATAACTGGTGATTATTGCTACAAATCATGTACCTGATGTTTATGGAATTCCTAAAGATTACAGCCAACTATTGAAAACAACTAATGGACAACAGATATCAGCTTAGTACCAGTTAAGAAGGTAAACTTACAGGAACATAAATCAGATACATGATATTGAGGTACTGTATATATATAAGAGAACTTTTTATTACCTTTTCTCTTTCTTCCTTCACTTTCTCGGGATCATTTTCATCAATCCATGTTTGCATCTTGATTGTTTTCTTGTTTTGAGAATCAACAAGAGCAGTTAATAAGCGATGGGATCGTGAGGACAGTGAAGAAGGCATAAACCTCATCTTCTGTAGAAGCCTTCCTTGTGATTGCATAAGCCCCTGAGAAAAAGTCAGTTGTGAGTTTATGAACATGGTGATGATCAATGGATAAAAGAGGCAGGGGAAGAGATTGTATAATTGCCTTTCCATTCCTCAGAAACAGGTTGGAATTATCATGATTTGAGTCATTTACAGATATATCAAGAACTTCATTGCCAATCAGCAGTTGTATGCTTCCATCTTTCCACTTTACAAAACGTGCATTGCTTTCACGCTGCAAGAAACAACGCTTAAAGATTTAATAGTAATTTGGAAGAATAGCAGTCATGAAGTACAGCTTAAACAGAGCACCAATGACATGCAAGACCCTTGATATCTAATCCTCATGTACAAACTTGAATGATATAACACAAACATGCTAAGCAAAGTCACAAAACTGTTTTCTCTATCAGATATATATTCCATAGTAAAAACGAAGAAAATGTCATAGTGAAAAGGTGCAGAAAACAGTGAGTGCAATACACTGACAATGTGACAAGGTTCCTAAGGAAGAAGAAACTACAAAACATGGCACAACAAATATGGCATGAAATTTTGACTCACAGATTCGGTGCCATCAGCGTTCTTAACGATTTTCCAGCGGACAATATTATCCTCCAAGCGTATCTTTTTCCTGCTCCCAGATTCATCTGTCAAAGCATCCTCCTCCACATATGTTTCAGGATCAAAAGGTTTTGGATTAACCCCCATAATATTTGAAACCTTGATCACATTCATCTAAAAAAGAAACCCAATCAGAAAGAAAATTCTATTTGTACAAGCCTACAAGGTGCTGAAAAAAAAATCACGAGCTTATAAAACAGGTATTATTGCAAACTATGAAAACCTTTGGACAGAGAACTATGAGATGATATCGGTTAGACATTATTGTTTCAACAGCGAGAAGCACACTGTCAAAATTTTGATCTTTGATCAAATAGTTCCTCCATTTTCAAATAATTGACACTCTTGACAAAAACAACCATACCAAGGAAATTGTACTTTTAATCTGTAGTTACAAGAATAGCTCTTCAGTAGTATCTGGCGCATGAATAACAAGGTGGAAAAGAAAGGGCCATGCATAGAAGTATTTGGGGAAATTCGTCTTGGGAAGCATGAAGTGCCAAGTATTTGAAATCAAGAAGACTGATTAAAAGTGCCAATTATTCAAAAATGAAGGGACTATCTTCATAAATATGCATAGATTGGCCACAAATATGGTAGATTAATGTAGTTAGAAATGTTAAGTTGGTAGCAAAATGCACAGTAATAATAAAAGATATAGTTCACTGCTACATGCGTCCTATATTACAGAACTCACTCTGTCAGGTTGACCAGGTGGCAGCATACGTGGAACCACCAAATTCAGCGGAGGACCAAGTGGCTTATCTTTCAGTTCATGTTCAATATTTTCATCCGGTTCATAATGCTTATCTTCATCAACCATGTCCTCTGGAAGTAATTCCTCATAGGGGCCTTCATCATTCATAAGTGATTCCTGTGAATGCACAGGATTGATTGGCTATGTTAAGTGATCCCCAAGGGCTAAAAACACATATGGAAACAGTGGAATAAATTTTCCAGGTGATAAAAGATAAGTAAGAACATAGATATACCGCCTAGCCATCAAAAAGAATAATCATGTAGAAAAAGAAGTACCAGACCAGCTCAAACAACTTGTACTTACCAGAAAGGAAATCAAATGAGTTTGTAATTTTCCTTCCTTCTTCTAGTGTACAATGTACAAAGTAGAAACAAAAAAGAAACGCTTCTTTTATTAAAAAAATGATGATTTAGGATGGCTTCTATCGAACTTTTAGAACTTATATGCTACAATATCTCATTGAATTTTATTTTGGACTACAGGATTGAATCAATTGATACCTCTGGGCTTTTCATGAAAAATGCTTTCATGATCTTGTAATTTACTGACTTTATGCTACAATACAAACTAGTGGACAAATTTGTGTTTTTTCAATACTGTGCGGATGTTCAAAAGGTGATTAGTTTGTCACTGGATGGTGTAACACCTTTATGTCATCTTTAAATTGTATGCCATGGCACATAAAACCAGTGATTCGGAAATCATGTATTGCCGACACCCCAATATCATCTAAATACACATAAAAGTACACAAAAACTGACATGGATAGAACAAAAAGTTATGCACAGAATTTATAAGTTGAGTTAAGAAATGAGTTCATTTGTTGTCTCACATGGGCATGTTTATTGTCATCTCGAGAACCATATGGAGCAAGCCCATCCTCATCGTTATCATCAAAAGCATCATGGAGAACTTCATGGTCTTCTTCGTTCTCTGTTGACCTGCCATAGGA
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| CDS seq | TCCTATGGCAGGTCAACAGAGAACGAAGAAGACCATGAAGTTCTCCATGATGCTTTTGATGATAACGATGAGGATGGGCTTGCTCCATATGGTTCTCGAGATGACAATAAACATGCCCATGAATCACTTATGAATGATGAAGGCCCCTATGAGGAATTACTTCCAGAGGACATGGTTGATGAAGATAAGCATTATGAACCGGATGAAAATATTGAACATGAACTGAAAGATAAGCCACTTGGTCCTCCGCTGAATTTGGTGGTTCCACGTATGCTGCCACCTGGTCAACCTGACAGAATGAATGTGATCAAGGTTTCAAATATTATGGGGGTTAATCCAAAACCTTTTGATCCTGAAACATATGTGGAGGAGGATGCTTTGACAGATGAATCTGGGAGCAGGAAAAAGATACGCTTGGAGGATAATATTGTCCGCTGGAAAATCGTTAAGAACGCTGATGGCACCGAATCTCGTGAAAGCAATGCACGTTTTGTAAAGTGGAAAGATGGAAGCATACAACTGCTGATTGGCAATGAAGTTCTTGATATATCTGTAAATGACTCAAATCATGATAATTCCAACCTGTTTCTGAGGAATGGAAAGGCAATTATACAATCACAAGGAAGGCTTCTACAGAAGATGAGGTTTATGCCTTCTTCACTGTCCTCACGATCCCATCGCTTATTAACTGCTCTTGTTGATTCTCAAAACAAGAAAACAATCAAGATGCAAACATGGATTGATGAAAATGATCCCGAGAAAGTGAAGGAAGAAAGAGAAAAGGCTGAAGGAGAAAATATTCGAGCTAGTTCAAGTCTTCAACGAAAAAGAGAACAGGTGAAGCGCAAATACAGTCAGCCTCTTAGGAAAAGGCGGAAGCTTACCCCAGGTTTTCTGGAAGATGCATTAGAGGAGGATGAGGCACCTGGTGTTGGTTATAATCAGCGCCGAGGCCCAGGCCATGCACATTTTGAGGATAGCTTGGAGGCTGAAGCACTTTCTAAGAGACACGTAACTAATGCAAAGAAGGCAAATGTAGGGAAAGCTGTTCCTTCTCCCAGTGTACCCAAGCATCAGGTGAATGAGTATTCCAAGAGTGAAAGTGAGGAATCAGAGTATGAAACAGATGTCGAGGATATAGATAATTCACCAACAAATGGAAGGGAAGATGACATGGATGAAGAGGAAGAAGACCCAGAAGAAGTCATAGGTGATACTTCCATGTCAGATGAAAATAATGAGGTGAGATAA
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| Protein seq | SYGRSTENEEDHEVLHDAFDDNDEDGLAPYGSRDDNKHAHESLMNDEGPYEELLPEDMVDEDKHYEPDENIEHELKDKPLGPPLNLVVPRMLPPGQPDRMNVIKVSNIMGVNPKPFDPETYVEEDALTDESGSRKKIRLEDNIVRWKIVKNADGTESRESNARFVKWKDGSIQLLIGNEVLDISVNDSNHDNSNLFLRNGKAIIQSQGRLLQKMRFMPSSLSSRSHRLLTALVDSQNKKTIKMQTWIDENDPEKVKEEREKAEGENIRASSSLQRKREQVKRKYSQPLRKRRKLTPGFLEDALEEDEAPGVGYNQRRGPGHAHFEDSLEAEALSKRHVTNAKKANVGKAVPSPSVPKHQVNEYSKSESEESEYETDVEDIDNSPTNGREDDMDEEEEDPEEVIGDTSMSDENNEVR |
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| Function | Protein LEO1 homolog [UniProtKB/Swiss-Prot:Q9FNQ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0756500 | OsNip_03t0756500-00 | Chr03 | 31226163 | 31230517 | - | RAP2018-11-26 | ||
| CDS seq | TCCTATGGCAGGTCAACAGAGAACGAAGAAGACCATGAAGTTCTCCATGATGCTTTTGATGATAACGATGAGGATGGGCTTGCTCCATATGGTTCTCGAGATGACAATAAACATGCCCATGAATCACTTATGAATGATGAAGGCCCCTATGAGGAATTACTTCCAGAGGACATGGTTGATGAAGATAAGCATTATGAACCGGATGAAAATATTGAACATGAACTGAAAGATAAGCCACTTGGTCCTCCGCTGAATTTGGTGGTTCCACGTATGCTGCCACCTGGTCAACCTGACAGAATGAATGTGATCAAGGTTTCAAATATTATGGGGGTTAATCCAAAACCTTTTGATCCTGAAACATATGTGGAGGAGGATGCTTTGACAGATGAATCTGGGAGCAGGAAAAAGATACGCTTGGAGGATAATATTGTCCGCTGGAAAATCGTTAAGAACGCTGATGGCACCGAATCTCGTGAAAGCAATGCACGTTTTGTAAAGTGGAAAGATGGAAGCATACAACTGCTGATTGGCAATGAAGTTCTTGATATATCTGTAAATGACTCAAATCATGATAATTCCAACCTGTTTCTGAGGAATGGAAAGGCAATTATACAATCACAAGGAAGGCTTCTACAGAAGATGAGGTTTATGCCTTCTTCACTGTCCTCACGATCCCATCGCTTATTAACTGCTCTTGTTGATTCTCAAAACAAGAAAACAATCAAGATGCAAACATGGATTGATGAAAATGATCCCGAGAAAGTGAAGGAAGAAAGAGAAAAGGCTGAAGGAGAAAATATTCGAGCTAGTTCAAGTCTTCAACGAAAAAGAGAACAGGTGAAGCGCAAATACAGTCAGCCTCTTAGGAAAAGGCGGAAGCTTACCCCAGGTTTTCTGGAAGATGCATTAGAGGAGGATGAGGCACCTGGTGTTGGTTATAATCAGCGCCGAGGCCCAGGCCATGCACATTTTGAGGATAGCTTGGAGGCTGAAGCACTTTCTAAGAGACACGTAACTAATGCAAAGAAGGCAAATGTAGGGAAAGCTGTTCCTTCTCCCAGTGTACCCAAGCATCAGGTGAATGAGTATTCCAAGAGTGAAAGTGAGGAATCAGAGTATGAAACAGATGTCGAGGATATAGATAATTCACCAACAAATGGAAGGGAAGATGACATGGATGAAGAGGAAGAAGACCCAGAAGAAGTCATAGGTGATACTTCCATGTCAGATGAAAATAATGAGGTGAGATAA
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| Protein seq | SYGRSTENEEDHEVLHDAFDDNDEDGLAPYGSRDDNKHAHESLMNDEGPYEELLPEDMVDEDKHYEPDENIEHELKDKPLGPPLNLVVPRMLPPGQPDRMNVIKVSNIMGVNPKPFDPETYVEEDALTDESGSRKKIRLEDNIVRWKIVKNADGTESRESNARFVKWKDGSIQLLIGNEVLDISVNDSNHDNSNLFLRNGKAIIQSQGRLLQKMRFMPSSLSSRSHRLLTALVDSQNKKTIKMQTWIDENDPEKVKEEREKAEGENIRASSSLQRKREQVKRKYSQPLRKRRKLTPGFLEDALEEDEAPGVGYNQRRGPGHAHFEDSLEAEALSKRHVTNAKKANVGKAVPSPSVPKHQVNEYSKSESEESEYETDVEDIDNSPTNGREDDMDEEEEDPEEVIGDTSMSDENNEVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.593877 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0109600 | RBH | 1.875170 | 3.851320 | 4.499899 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g54930 | RBH | 0.262078 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0756500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035330 | RBH | 0.000000 | 0.0 | 0.711281 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035000 | RBH | 0.0 | 0.0 | 0.953600 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035090 | RBH | 0.0 | 0.0 | 3.654999 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034910 | RBH | 0.605480 | 0.0 | 3.038678 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0534300 | RBH | 0.3284945 | 0.063373 | 6.0817485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034690 | RBH | 0.0 | 0.0 | 0.095493 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0533500 | RBH | 0.2666765 | 0.0084505 | 8.3085235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035170 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0034940 | RBH | 0.163287 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034680 | RBH | 0.122319 | 0.000000 | 0.603888 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034520 | RBH | 0.0 | 0.0 | 0.000000 |
