Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0755625 | OGI:03087620 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:31179872-31180829 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATCACAAAAATAGCAGATGCAAATTTTAGATTATATGAGACAAAGCTACGCACAATCCCTCAGAGACCCGTTTAAAATCACACACACACCCGAATTAAACCAATTGCAAATGGGTACTCCATCCAAGACCAAACCACAAAGGTTATGGTCGAAGGATGGACACTTGCAAAGGAGAAAAGCAGCTGCTGTTTAAAGTGTCATACGGCACTTCCTATGGTCTTAGATTCCTCACCGGGACAAGGTTGCAACTCATAATACATGAACAGAATTTAGATCTATATAAACTACAATATTATTGGATTAAGCCTCAGGAAGACAGACAAATGTCGTCATTTGATAATCCGACGGTAATTCCAACAATATGCTAATCATCACAGGCTCAAAATCATAGATGTAGGAAGCAGAAACAATTATAAAACACGCAAGATTGGATGAAAGAATATAAATTGGATATTTAAAGCATCATCAGAAAGAAAAGCCTTCTCATTCACAGTGTGATTGCACTGTGTCAGAAGGTGTCCTAAGATTGTTATAAGGTTTCATCCTCTGATACTGTAAAAATTCCACATAAACTATAAACAATAAAGGATATGTTGTGACTGGATTCAGATGCAGAGATGTGTAACGTCATATGGACGACAAAAGCCGTCCTCTGATCAAGTGTAGGATTATGCATCAATTACCTACTCACAATCCAAACAGATCTAAGAAAACAATAAAAAAAACATAGAAATAATAAGAACAAATTGGAGGTGGATTTCATGTTACTCAGTGGTGGCTTTAATAATTGGTTCGATTCTGCCAGCGAGCGTCCTCAATGCCTTCAGAAGAGGGAGCATAATATCCTCATCGCAACAGCCTCCTCCAATGCAAAGAACACAGATCTAAACCGAAATGGAACAAAAAATATACAAATTTTAACACAAAATATCAAACCATAAATAATAAAAAGAGCAA
More
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| CDS seq | ATCTGTGTTCTTTGCATTGGAGGAGGCTGTTGCGATGAGGATATTATGCTCCCTCTTCTGAAGGCATTGAGGACGCTCGCTGGCAGAATCGAACCAATTATTAAAGCCACCACTGAGTAA |
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| Protein seq | ICVLCIGGGCCDEDIMLPLLKALRTLAGRIEPIIKATTE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0755625 | OsNip_03t0755625-00 | Chr03 | 31179872 | 31180829 | - | RAP2018-11-26 | ||
| CDS seq | ATCTGTGTTCTTTGCATTGGAGGAGGCTGTTGCGATGAGGATATTATGCTCCCTCTTCTGAAGGCATTGAGGACGCTCGCTGGCAGAATCGAACCAATTATTAAAGCCACCACTGAGTAA |
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| Protein seq | ICVLCIGGGCCDEDIMLPLLKALRTLAGRIEPIIKATTE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.991501 | 1.853178 | 10.159678 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0755700 | SBH | 3.695145 | 3.809724 | 4.188938 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g54860 | RBH | 2.112573 | 2.284290 | 0.917112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0755700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035260 | SBH | 0.961821 | 8.869086 | 7.637891 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034840 | SBH | 0.000000 | 0.000000 | 16.745420 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0533600 | SBH | 6.574161 | 14.9112115 | 15.3194065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034620 | SBH | 0.000000 | 0.793058 | 0.713538 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034820 | RBH | 2.381385 | 110.590401 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034610 | RBH | 0.205293 | 3.800080 | 3.132035 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034450 | SBH | 0.340062 | 9.324462 | 5.844176 |
