Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0743200 | OGI:03085490 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:30502713-30507060 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGAGGCCGCCGTGGGACCCGACCGTATCGCTCCGGCTGGGCCACCCGGCGCTCGTCCTCCTCGAGCGGTGCGGCGGCGGGGCGCGGCCGTTCAAGGCCATCCTCGCCCACATGCTCCGCCTCCGCCTCGCCTTCGAGACCTTCCCCATGAGCAGGCTCCTCCACTTCGCCACCGTCTCCTTCCCGCACCACGCGCGCGCCGCCGAGACCCTCTTCGAGCACTTCACCCCTCGCCCCAACCTCTACATCTACAACCTCATGCTCTCTTCGGCCGCGGCGGCGGCGGCGGCGGCCTCCTCCTCGCCTAGTCGTCGGCCGGCTGCTCTCTACATGTCGATGCTGGCGTCATCCATTCACCCCGATGAGCAAACCTTCCTGTCGCTGCTCAAGTCGGTGGATGCGGAGCGCCGCTCCGTCGGGAAGCAGGTGCACGCGCACGTGGTGGTGACTGGCCTGCATTCGCGCGTGTACCTCCGGAACTCGCTGATCAAGATGTACCTCGACGCCGGCGATGTGGAGGCGGCGGAGGCGATGTTCCGGTGTGCGCCGACGGCGGACGCGGTGTCCTGCAACATCATGCTGTCCGGGTACGTCAAGGGAGGATGCAGCGGGAAGGCGCTGCGGTTTTTCCGCGGCATGGCGTCGAGGGGGATCGGTGTTGATCAGTACACGGCTGTTGCTCTCCTCGCTTGCTGCGGGCGGCTGAAGAAGGCAGTTCTTGGTAGGTCCGTCCATGGCGTCGTCGTGCGGAGGATCGGTGTCGCGGATAGGGGATTGATCTTGAGCAATGCTCTCTTGGATATGTATGCCAAATGCGGGGAAATGAACACGGCCATGAGAGTCTTTGATGAAGCTGGTGAGAGGGATGGCATTTCGTGGAACACTATGGTTGCCGGATTCGCTAATGCTGGCTTGTTGGACCTTGCTAGCAAATATTTCGGTGAGGCGCCTGCCAGGGATATAATATCCTGGAATGCGCTTCTGGCTGGATATGCTCGATATGAAGAATTCTCTGCAACAATGATACTATTTCATGATATGCTTGCTAGTAGTGTAATACCTGATAAGGTGACTGCTGTTACTTTGATCTCTGCGGTTGCCGGCAAGGGGACTTTAAATTCAGCAAGGAGTGTCCATGGTTGGGTGGTTAAGGAGCATGGTACTCAAGATTCTTTCTTAGCATCCGCTCTTGTTGATATGTATTGCAAATGTGGAAGTATCAAGCTAGCGTATGCCGTATTTGAGAAGGCCGTGGACAAAGATGTTACCTTATGGACAGCTATGATATCTGGCCTTGCATTCCATGGCCATGGAGATGTAGCATTGGATCTTTTTTGGAAGATGCAAGCTGAGGGTACAGAACCTAATGGGGTAACTTTGGTTGCTGTTCTCAGTGCTTGTAGTCATGCTGGCCTGTTTGATGAAGGGTGCAAGATTTTTGATACCTTGAAGCAAAGGTTCAACATTGAACCAGGAGTAGAACACTTTGGCTGTATGGTTGATCTCCTTGCACGATCAGGTAGGCTGTCTGATGCAGTAGATTTGGCCAGGAGGATGCCAATGAAGCCAAGTCGGTCTATATGGGGTTCCATTTTAAGTGCGAGTTCAGCTTGTCAGAATACTGAAGTAGCAGAGATTGCTTCAAAGGAACTCCTCTGTCTTGAACCCGCAGAGGAGGGTGGATATGTTTTGCTTTCCAACATGTATGCTGCTGAAGGTCAGTGGAACTACAGCAATGAAGTAAGGGAGAATATGGAAAGGAAAGGAGTGAGAAAATCAGCAGGTGCTAGTACTTTTGGCAGCTGATTCTGTTGCTTCATATGCTAGGTAGGAGTATGTTTCAATTGTGTAGGCAGTACTAATTTTCAATTGCACACTTCTTTCTCCCAATAAACACATTTACTGGTGCACATGTCATTTACTCATCCTCTTCTAACCTGGAAGAATGCAGTTTTCAATCTGGGGAATAAAGTATTATTCATAAACCACTAGCTATAAGTTATTGGTGAAAACTTTGATGCTAAAACAGTATCTGGGCTTACCCGCTCCCTTTAATTGATTTCTTCTAATTCTTTATTCACACAACATATTCTGAATACATATTGATTTTTCTCTTCTTCCAGCATGCAGGAATTGAAGCAGACATTTTTATTCATAAAAGATCAAATTTCAGGGCATGATCTAGATTCATTAAGAACAATTTTGCACTTCTCCAGTAAAAAAAAAATCCTGCACTTCTATGTAAGCTATACCTCTAGTCATAAATTCTGTATGCACTAGAGATTGCTTCTACAATTATCGCTGGTTATTATTTTTTTATAAGTGAGTCATCGCTAATTATTTGAGTGAAGCCTGCAATGTTTGCACTAGCATTTAAGTGTTTACTGATCAAAAGAAACTTGATATCAAAATCTACCAGATCTATGAGATAATCCCATAATCCCATTGAGTCTTTTGATTTCAAATGTTATTATGATTCTACCAGACACTGAGACTGCAAAGTACAAAGGTAAAAGTATGGAAGAAATTCCACACAATGTTTAACACGAATATAATGTATAGCCATGATATCCAAGCTTTCTCTGATAAAATCTCTTAACTCTTTGAACTGTAGCTAGCCAATTGGCCCAGAATAAATTCGATAGGAAGCCCCATATCTTTGTTAGATGCTGATCAAGTACGGCAACAAAGAAAGTATACTCGTAAACCTTATTTTGAGAAACTGCAAACGGAATTTTCTAAATGCCCGAAGGTTCGGAACTGGAAACAAAATCTTGTAGATGCCTGAGGGGGTTGTCTTAAGTGGGAATCTTCCTCAGCAGTGCAAAATTGAAGATACCGAACTAGAAGATTCAGGAATTTTCTCTTCTTGCATAGTAAAATAAACTAATGATGTTTTTACTACAAACAAACCTTGCAACTTATGTAACGTGTAAATGCATCTTTTGGCAGGTGCAGTTTCATGAACGTTGACAAGATTGGGGGTGATTGGGTGACAATGGCCGGCAACAATACCACATTCTTATCAAGCTACAATCAGCAAGATTACTAGTCCCAGTGCAGCAATGGATAATGTGCTGGTAACTGTCCATCAGGTTTCAGGTAGTGTTTATTTGTTCCAGTATTTTTTTTTCAGAACAAGAATTCCATACAAGCAAATTTATTCCAGCTCTCATAGATGATTTTTTTTCCTGCTGCTATTTTATTATATTTAAGCAGAATTGTCAATGGTCACCAATTTCCCCTATTTTTCATCACCACCTGAGCATATTAAATGCATTTCTGCTCTCACCATCTGTAAGTATAGTTTCACCATTCGCTAATATTATGAATAACAATATTTAATTGTTACCTCATTTCCTCCTTGAGCCATGCCATCCCTTCTCGTTCACCACGCTTCACCATATGGCATATGAAAGGAGTGCCTGCACGGCTGCACCCCATAGTCAATGGTTTCCCCGATTCAAGCATTTACACACAATCCTTGTTTCGGATTATCCATTTTTAACCACAGGTCCACTGCACCAACTGTGCACATTCTTGTGCCATGACAACTAGTGCACACTCATCCCCAGCCTTGCTGAGCTCACACATGTACAGTAGGCACCACAAACATCAATGCCAGATTATTAACAGTGCATGTAAGCTGCATTTTGAGGGTGGAATTACTTCACAGTATGCTGTTGCTTGGGTGGGGTAGCTGATTTATGTTCCAACATGTTCCTCTGTCTGTTGCAGGTATCATCATGCTGGCATCGCCTCTTGGGAAATGCATCCGTGCAGTTGAAAAAACGGATGTCCTGCTGAATTTTCATTCTTTGCATACCACTCCCTCCATCCTCGACAAATACAAGCACTCCTGAAAGTTTTAAGATAAATTATGGTTGGGATAAAAATATTTTCATGCCTCCGGTTGAATCCCTCAACCATCACCTGATTGTTTGGGATGGGGAGTAGGTGAGGAAATTGAACGAGGGGTAGCTGGACAAATTTCAAACGCTATAATTGCTTTATATTTGTAGAGGAGGATTCTCTCAGGGCCCTGATTGGACAAAACCAAGAGTTCTAGAAATTGACAGTACTTCAAAGGTGCCAACTTCCAAGGTTAGGAGAAACTGCTTTACTGCTGAAAGCCTGAAACATGTGCGCCGGGAGCCCCTGGAAGTATTGCCATGCCAATGCAAAACAATAGAAGTTCTGTTCACCTATATTGATGAGGACGGGGCTGCGATTAACTGCTACCCGTATAATTGTACGAGCTTGGTATGAATACGATGGGTCCACTCAGTGTATGTACACATAGCCCTTGCTCGAGGAGTTTCAGGAAACTGCAACTTTTCAAATATTC
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| CDS seq | GGGAGGCCGCCGTGGGACCCGACCGTATCGCTCCGGCTGGGCCACCCGGCGCTCGTCCTCCTCGAGCGGTGCGGCGGCGGGGCGCGGCCGTTCAAGGCCATCCTCGCCCACATGCTCCGCCTCCGCCTCGCCTTCGAGACCTTCCCCATGAGCAGGCTCCTCCACTTCGCCACCGTCTCCTTCCCGCACCACGCGCGCGCCGCCGAGACCCTCTTCGAGCACTTCACCCCTCGCCCCAACCTCTACATCTACAACCTCATGCTCTCTTCGGCCGCGGCGGCGGCGGCGGCGGCCTCCTCCTCGCCTAGTCGTCGGCCGGCTGCTCTCTACATGTCGATGCTGGCGTCATCCATTCACCCCGATGAGCAAACCTTCCTGTCGCTGCTCAAGTCGGTGGATGCGGAGCGCCGCTCCGTCGGGAAGCAGGTGCACGCGCACGTGGTGGTGACTGGCCTGCATTCGCGCGTGTACCTCCGGAACTCGCTGATCAAGATGTACCTCGACGCCGGCGATGTGGAGGCGGCGGAGGCGATGTTCCGGTGTGCGCCGACGGCGGACGCGGTGTCCTGCAACATCATGCTGTCCGGGTACGTCAAGGGAGGATGCAGCGGGAAGGCGCTGCGGTTTTTCCGCGGCATGGCGTCGAGGGGGATCGGTGTTGATCAGTACACGGCTGTTGCTCTCCTCGCTTGCTGCGGGCGGCTGAAGAAGGCAGTTCTTGGTAGGTCCGTCCATGGCGTCGTCGTGCGGAGGATCGGTGTCGCGGATAGGGGATTGATCTTGAGCAATGCTCTCTTGGATATGTATGCCAAATGCGGGGAAATGAACACGGCCATGAGAGTCTTTGATGAAGCTGGTGAGAGGGATGGCATTTCGTGGAACACTATGGTTGCCGGATTCGCTAATGCTGGCTTGTTGGACCTTGCTAGCAAATATTTCGGTGAGGCGCCTGCCAGGGATATAATATCCTGGAATGCGCTTCTGGCTGGATATGCTCGATATGAAGAATTCTCTGCAACAATGATACTATTTCATGATATGCTTGCTAGTAGTGTAATACCTGATAAGGTGACTGCTGTTACTTTGATCTCTGCGGTTGCCGGCAAGGGGACTTTAAATTCAGCAAGGAGTGTCCATGGTTGGGTGGTTAAGGAGCATGGTACTCAAGATTCTTTCTTAGCATCCGCTCTTGTTGATATGTATTGCAAATGTGGAAGTATCAAGCTAGCGTATGCCGTATTTGAGAAGGCCGTGGACAAAGATGTTACCTTATGGACAGCTATGATATCTGGCCTTGCATTCCATGGCCATGGAGATGTAGCATTGGATCTTTTTTGGAAGATGCAAGCTGAGGGTACAGAACCTAATGGGGTAACTTTGGTTGCTGTTCTCAGTGCTTGTAGTCATGCTGGCCTGTTTGATGAAGGGTGCAAGATTTTTGATACCTTGAAGCAAAGGTTCAACATTGAACCAGGAGTAGAACACTTTGGCTGTATGGTTGATCTCCTTGCACGATCAGGTAGGCTGTCTGATGCAGTAGATTTGGCCAGGAGGATGCCAATGAAGCCAAGTCGGTCTATATGGGGTTCCATTTTAAGTGCGAGTTCAGCTTGTCAGAATACTGAAGTAGCAGAGATTGCTTCAAAGGAACTCCTCTGTCTTGAACCCGCAGAGGAGGGTGGATATGTTTTGCTTTCCAACATGTATGCTGCTGAAGGTCAGTGGAACTACAGCAATGAAGTAAGGGAGAATATGGAAAGGAAAGGAGTGAGAAAATCAGCAGGTGCTAGTACTTTTGGCAGCTGA
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| Protein seq | GRPPWDPTVSLRLGHPALVLLERCGGGARPFKAILAHMLRLRLAFETFPMSRLLHFATVSFPHHARAAETLFEHFTPRPNLYIYNLMLSSAAAAAAAASSSPSRRPAALYMSMLASSIHPDEQTFLSLLKSVDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFGCMVDLLARSGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELLCLEPAEEGGYVLLSNMYAAEGQWNYSNEVRENMERKGVRKSAGASTFGS |
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| Function | Pentatricopeptide repeat-containing protein At3g04750, mitochondrial [UniProtKB/Swiss-Prot:Q9SR01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0743200 | OsNip_03t0743200-01 | Chr03 | 30502713 | 30507060 | + | RAP2018-11-26 | ||
| CDS seq | GGGAGGCCGCCGTGGGACCCGACCGTATCGCTCCGGCTGGGCCACCCGGCGCTCGTCCTCCTCGAGCGGTGCGGCGGCGGGGCGCGGCCGTTCAAGGCCATCCTCGCCCACATGCTCCGCCTCCGCCTCGCCTTCGAGACCTTCCCCATGAGCAGGCTCCTCCACTTCGCCACCGTCTCCTTCCCGCACCACGCGCGCGCCGCCGAGACCCTCTTCGAGCACTTCACCCCTCGCCCCAACCTCTACATCTACAACCTCATGCTCTCTTCGGCCGCGGCGGCGGCGGCGGCGGCCTCCTCCTCGCCTAGTCGTCGGCCGGCTGCTCTCTACATGTCGATGCTGGCGTCATCCATTCACCCCGATGAGCAAACCTTCCTGTCGCTGCTCAAGTCGGTGGATGCGGAGCGCCGCTCCGTCGGGAAGCAGGTGCACGCGCACGTGGTGGTGACTGGCCTGCATTCGCGCGTGTACCTCCGGAACTCGCTGATCAAGATGTACCTCGACGCCGGCGATGTGGAGGCGGCGGAGGCGATGTTCCGGTGTGCGCCGACGGCGGACGCGGTGTCCTGCAACATCATGCTGTCCGGGTACGTCAAGGGAGGATGCAGCGGGAAGGCGCTGCGGTTTTTCCGCGGCATGGCGTCGAGGGGGATCGGTGTTGATCAGTACACGGCTGTTGCTCTCCTCGCTTGCTGCGGGCGGCTGAAGAAGGCAGTTCTTGGTAGGTCCGTCCATGGCGTCGTCGTGCGGAGGATCGGTGTCGCGGATAGGGGATTGATCTTGAGCAATGCTCTCTTGGATATGTATGCCAAATGCGGGGAAATGAACACGGCCATGAGAGTCTTTGATGAAGCTGGTGAGAGGGATGGCATTTCGTGGAACACTATGGTTGCCGGATTCGCTAATGCTGGCTTGTTGGACCTTGCTAGCAAATATTTCGGTGAGGCGCCTGCCAGGGATATAATATCCTGGAATGCGCTTCTGGCTGGATATGCTCGATATGAAGAATTCTCTGCAACAATGATACTATTTCATGATATGCTTGCTAGTAGTGTAATACCTGATAAGGTGACTGCTGTTACTTTGATCTCTGCGGTTGCCGGCAAGGGGACTTTAAATTCAGCAAGGAGTGTCCATGGTTGGGTGGTTAAGGAGCATGGTACTCAAGATTCTTTCTTAGCATCCGCTCTTGTTGATATGTATTGCAAATGTGGAAGTATCAAGCTAGCGTATGCCGTATTTGAGAAGGCCGTGGACAAAGATGTTACCTTATGGACAGCTATGATATCTGGCCTTGCATTCCATGGCCATGGAGATGTAGCATTGGATCTTTTTTGGAAGATGCAAGCTGAGGGTACAGAACCTAATGGGGTAACTTTGGTTGCTGTTCTCAGTGCTTGTAGTCATGCTGGCCTGTTTGATGAAGGGTGCAAGATTTTTGATACCTTGAAGCAAAGGTTCAACATTGAACCAGGAGTAGAACACTTTGGCTGTATGGTTGATCTCCTTGCACGATCAGGTAGGCTGTCTGATGCAGTAGATTTGGCCAGGAGGATGCCAATGAAGCCAAGTCGGTCTATATGGGGTTCCATTTTAAGTGCGAGTTCAGCTTGTCAGAATACTGAAGTAGCAGAGATTGCTTCAAAGGAACTCCTCTGTCTTGAACCCGCAGAGGAGGGTGGATATGTTTTGCTTTCCAACATGTATGCTGCTGAAGGTCAGTGGAACTACAGCAATGAAGTAAGGGAGAATATGGAAAGGAAAGGAGTGAGAAAATCAGCAGGTGCTAGTACTTTTGGCAGCTGA
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| Protein seq | GRPPWDPTVSLRLGHPALVLLERCGGGARPFKAILAHMLRLRLAFETFPMSRLLHFATVSFPHHARAAETLFEHFTPRPNLYIYNLMLSSAAAAAAAASSSPSRRPAALYMSMLASSIHPDEQTFLSLLKSVDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFGCMVDLLARSGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELLCLEPAEEGGYVLLSNMYAAEGQWNYSNEVRENMERKGVRKSAGASTFGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.180513 | 0.277681 | 0.441195 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g53170 | RBH | 0.108585 | 0.166128 | 0.101024 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0743200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0034270 | RBH | 0.462667 | 0.0 | 0.465815 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033950 | RBH | 0.000000 | 0.592403 | 0.099688 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0034050 | RBH | 0.308813 | 0.818751 | 0.243150 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0034340 | RBH | 0.064265 | 0.021662 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033920 | RBH | 0.405122 | 1.287033 | 1.640598 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0522000 | RBH | 1.7277925 | 6.3675495 | 2.9056355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033710 | RBH | 0.0 | 0.0 | 0.111395 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0522100 | RBH | 0.280678 | 1.0247565 | 4.2681555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0034160 | RBH | 0.0 | 0.047024 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0034150 | RBH | 0.070588 | 2.214421 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033890 | RBH | 0.811682 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033900 | RBH | 0.132074 | 0.000000 | 0.248249 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033920 | RBH | 0.045691 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G033690 | RBH | 0.000000 | 1.702580 | 0.298203 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0033520 | RBH | 0.0 | 1.112509 | 1.465392 |
