Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0734900 | OGI:03084200 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:30094435-30099093 | ||||||||
| Gene Symbol | GATA19, OsTIFY1b, TIFY1B, OsCCT15, CCT15, OsGATA19, OsGATA19a, OsGATA19b | ||||||||||
| DNA seq | GCTGATCTTTGTTAGTTCTGTTGCCTTATGTACCATCCTAAAGTCAGGAGTTCCTGAAAAATAACCTACGTATCAATTATACACAAGCGTCTGAACATTTTGTCACGAGGTAGCCATGCTATCTTCTTCTTTGGTTGGTGGCAACACGTCTGCCTTCTGCTCCTGCTCTGGCACCCTGACGAAGAAACTAGATTAGATGGTCAAGTAGTTGTGTTTTGAGAAACTTATCTATAGTCAAAGAAGTTATTTAGGCAGCATTTTCAGCAGTAAAGCTGTAAAGCCTGCCGAAAATTTTCACTTAAAACCTGACCATGAGTATTCTGTATGTTCCAAGCTTAGGCTTGTGTTTAGAGTGCACTTGTTAGTTTGCATGATTGCATTTGATCAAGATGCAGTAAACATGGACTGCTTACATCTCAGTGTCAGTTTTCATAGTGGTTTGATTATGCTCAGCACACAGATTTGCTTTGCTGTCATCTGTATCACCCTGTACAATGAGAAGCACAAATAAATCAAAAGTGTAATGTTCAGGTAAACCAAGTTTATATTACAGGCATAACGCACCGTTTTACTCAGATCAGCAGGATGCTGCACAGTCATTTTGGGGGCATTCAAAGGACTTCTTAGGGTGCCCTGAGTTTTTTTTGGGTGATTTAGTTACAGCAATTGTGTTAGTATGGACCATAACATCAATAGTTATTTAGCCTACTCGTAAACAAAGAAACATATTCAAGAGAAAAGGAGTGAACAAAACAGGCAGCAGTGTTCATAAAGTGAGGAAATTACCTTGTTTGCCCACATTAGGCCACAGGCATTACAGAGGGACCTTGGACCAGCTGGCCCACGACGCATTGCTGGAGTAAGCCTTGAGCTGATGCCACAATTTTGGCAACTAGAAGGGCAAACCAACATCAGTGCACAATATATACAGGCAGCCGCTTCAAGTATCTGGAATTGATGTAACACGACTTGCACATACACACAGTTGACAACTAACTCACTGCGTTTCTCGGATATGATCATCCTCGCCATTGGCTGTGGAGCCGCATGGTGCAGAAGAACATGAACCATCACCAAAGTCTGCCCTTCCAGCAAACTGGCCTTTACGTCGTTTCATCCTGACAATTATAATGCGTGCATATTATAACATCTGAAACAAAATAAATGGTTACAGAAGAATAGCTCAACAGCAATCTTATGTTGACTGCCTGTACCAAGAATGGTAAACAGAGAATGACTGAATGACATGGTACTGATAAAGCAATTTATTTATTCAGAGCAGCCCAATCTTACTAAATGGGGCAAAAAATCAAGAGCAGGTTTTTTATAACCAATTGGAATAAAGTGCTGTAAACATTCATTTTGCATATTAGAACCATGAAAGTTAGCAATGTGACATTGCAAAGGCAAATTACAATGTAAGAAACTTTTATTGCACCAGTAAGACATGATTGTTCCATGACCCATAGTTTTATGCTGTTATTCATTGCTACTGAAAATATTTCTGAGCCATCATTACTCCCTCTATAACTATTCAAGAACAAGTGACGTCATAACGGATAAGCTACATGGAAAATTTAAAAAAATACTAGTCAACAGAGCTATATCCCCATCTGTCTTAGTTTATTGTCTTATAAGAAAAGGTTGATGTGACAAGAATCAGGTAAAATGCTGGTTTATTAATAATGAAAGATCACAACATTGTTAATTTGATATAACAAGCATTTTCACACTAAATTAGCAAGTCAGGAATGCCATTTAAAAGTGCATATGCATTCACCCTGCAATTATGATGGTAGAAATATGTTCAGAACGTGTATATTTTAGACAGTGCAGAAGGGAATGGGCATGAGTCAAGTCCATACTTTTGAGCAACCTCCTTACGAACACTGTATCTTATTTTCTTATCAAAACATCTTTCCTTCCTCTTCTCACGAAACCTCATTAAGGAAGCAACTCTTCTGGCAGCCACAGTTGTACTCTACACACGACACAGTAAAAGCTTTAGGAGAAACTAGAAATAGTCAAACAACCTTTGTGTAGAGATTCTACAGAACATGGATACCTTTTCATCGAATGTGGTAGGTACAGCCATGCTTACTAAACCAGGAGGCATGTCAGACCCTCCAAGTACCAATAGAACAGCCTGAACCTGTATAACACTAACATAACAGTCAGTCATGTATATCAACTACAAATGGCCATGAGCAATATAATAGCCAAAGCAATAAACAGCAGCTCATCACTAGTAACATAAGCACATGATCACCCTTGAAACTTTACTATGGTTGCATCACAATTGATTCATGGGACAGGAAAAGCTGAAAAAAGAGAAGGAATACAGATTAGAAAAGGTGTGTCACCTTGACCAAGGTCACATGGTGAATACATCAGCTGGAAAAAATTTCCATTTTAACCGAGTCACACTTATTTGCCATCAGGGGAATGTGTCCATCTCAGGTTAACTATATGCACAGCATAATATGTCATTATTCTCATAATCATTTACCAGAATCAGCCAGCAATTTATATGCGTGTGTCGTTTGGTTTACGTTTCTTTCAAGCCAATTTTACCAGCTTATATTTCATCCAACATAGTCAGTATATTATCTCAGTATAATAGATGGAATTCATACCAACAGGGATGTGTTTCTAGATATGTTATATTCCCTTTTTGTTAATGAAGATTTTCACTATAAATGACTCCAGAAGGCTTCTCATGATTGCAAGGTCAAAGATACTCTCTTGAATAAAAAAAGGGAAAACTATGTTTGAGAAAATGAACTAGACCAAAGCAAATGCTAGCGTGTGTCACTTTTCCTGAAGCCATTTGTATTATAAGGTATGCAAAACCACCTTGTAAGCATTGGATCAAATGAAAGATGTTTTTCTAAAAAAAAAATACATAACAACTATGAGGTTGACAGAACCACAGATTACTCCAGATGGCATTTCCTTAAGAATTAGATGGCTCCAACTTTCCAATGAAGAAAAGTCAGAGCTCAAGCATTCTCCCTCAAATCTCCAGAACCACCTGAATTAATCACAAGAAGTATATACTGTACAAGATAATCCACCTTAACCCAGGGCCACAATTAACATGCTTTGCACACTATTCAGCTCTTTTAGTGTCAATTTATTTCAGTTGCCTGTTGAATATGCATTCATTACGTTGGTTCCAAACACTGTTAACTAAAGGGAAAAAAAACATTTTCAATGTGCACAGAATATATTCTTCCAGTGCCATTTGATTCATCAAAGGTACATTTCTCTAAACTTGTGATAGAAGAAATAGAAAACACATGAGTGCAGATAAAGTTAAACAGAGAAGATGGACCCCCTTCTTTGAACAACTGGATGAAACCAACATATGAGTACGAGCATTAGTGTTGAGACAGATGCCTGCTACTGCTAGCAATGCCAATGGGGCTACTTTTTCTTAACAAAATAGTAACAATTATATCCCAAAACATGCCCTAAAGTACACTTTTTCCCCTATCAAAGCTGAGAAAATATGTTGACTACTTAGGTGTGGGCTGTGGCACTACACATTTGCAAATAAATCAATGCCTTAGCAATTTAGCATAAGAAGGAAAAGGTACAAACACAAACAAAACAAGTGATTAGTGATGGTACTATTTGTTTCATTAGACAGTCAAATTCTTATCTCCATTCAACATGCTGGGAATGCATTCAACTAAATAAAACAGATGTTGCAGCATTTAAACTTGCACCCTATTCTCAAATTCACCAAAGATAGGCACTAAAAAGACATGAAAGAAGGCAGCAAAAGGTCAAATCTATCTAAGAAAGCCTCCATTTTCTGTAGAAAGTCAAATAGAAATCGATGAGATATAGCAAATCAAGCAGACAAGCACACGAAACTAAATTCCGCAAGAAACAGCATATAATCAACTGGTATACATTTAAAAAAAGTCAATCCTAATTAGAACAATACCCAATTTCCTAGACGATCAATCGACAAATTACTGTTAACACAGTAGCACAAAGTCACAGAGTACGCATTCTCTGGCGAAATTCAACGAGGACGCAAACAGACCTCTGCTCAACCTAGAGCAAACAAAAATGGCCAATCTATTCATCAAACCAACCAATTACACCCAAAAAGATTGCTCGCTTGGTGCAATCGGAGGAAACATGCATGCTAATTTCCATCGCTCCATTCTACCGCAACAACACATTCAAAATCGAAGAAAAGGCACACCAAATTCATCACGAGGACGCCGCCTTCTCCGAAAACCAAGCAGCATCGCCAACGAAACGCGAATCCCCTAGTCCAATTCGGCCCCCGCAGCCCACCCTCGCCAATCTCCCGCGCCACCGCGCGCAAAGTCAACCCCACTCACCGGAGCTACCGAAAGGGCGAAAGGGAAGAACCAAACGGACGCGATGGAAAAAAATTTTGGAAGGGGTGAAAAAGGGCGCGACCTTTTGGGGCGGGACGGGGTCGAAGACGTAGACCTCCCCCTGGTACACGAGCGTCAGCTGCTCCGACGCCGCGCTCAGGAGCGCCTCCGCCGCCGCGGACTCCACCGCGCCGTCGCCGGCGGCGCCATCGTCCGCCGGGGGATCGCGGCCGTCCGCCGGGGGCTCCGCCGCCATCGGCTCGGGATCGGACGGTGGAGATGGGCCGCGGAC
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| CDS seq | ATGGCGGCGGAGCCCCCGGCGGACGGCCGCGATCCCCCGGCGGACGATGGCGCCGCCGGCGACGGCGCGGTGGAGTCCGCGGCGGCGGAGGCGCTCCTGAGCGCGGCGTCGGAGCAGCTGACGCTCGTGTACCAGGGGGAGGTCTACGTCTTCGACCCCGTCCCGCCCCAAAAGGTTCAGGCTGTTCTATTGGTACTTGGAGGGTCTGACATGCCTCCTGGTTTAGTAAGCATGGCTGTACCTACCACATTCGATGAAAAGAGTACAACTGTGGCTGCCAGAAGAGTTGCTTCCTTAATGAGGTTTCGTGAGAAGAGGAAGGAAAGATGTTTTGATAAGAAAATAAGATACAGTGTTCGTAAGGAGGTTGCTCAAAAGATGAAACGACGTAAAGGCCAGTTTGCTGGAAGGGCAGACTTTGGTGATGGTTCATGTTCTTCTGCACCATGCGGCTCCACAGCCAATGGCGAGGATGATCATATCCGAGAAACGCATTGCCAAAATTGTGGCATCAGCTCAAGGCTTACTCCAGCAATGCGTCGTGGGCCAGCTGGTCCAAGGTCCCTCTGTAATGCCTGTGGCCTAATGTGGGCAAACAAGGGCACCCTAAGAAGTCCTTTGAATGCCCCCAAAATGACTGTGCAGCATCCTGCTGATCTGAGTAAAACGGGTGATACAGATGACAGCAAAGCAAATCTGTGTGCTGAGCATAATCAAACCACTATGAAAACTGACACTGAGATGGTGCCAGAGCAGGAGCAGAAGGCAGACGTGTTGCCACCAACCAAAGAAGAAGATAGCATGGCTACCTCGTGA
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| Protein seq | MAAEPPADGRDPPADDGAAGDGAVESAAAEALLSAASEQLTLVYQGEVYVFDPVPPQKVQAVLLVLGGSDMPPGLVSMAVPTTFDEKSTTVAARRVASLMRFREKRKERCFDKKIRYSVRKEVAQKMKRRKGQFAGRADFGDGSCSSAPCGSTANGEDDHIRETHCQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMTVQHPADLSKTGDTDDSKANLCAEHNQTTMKTDTEMVPEQEQKADVLPPTKEEDSMATS |
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| Function | GATA transcription factor 19 [UniProtKB/Swiss-Prot:Q0DNU1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0734900 | OsNip_03t0734900-00 | Chr03 | 30094435 | 30099093 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCGGAGCCCCCGGCGGACGGCCGCGATCCCCCGGCGGACGATGGCGCCGCCGGCGACGGCGCGGTGGAGTCCGCGGCGGCGGAGGCGCTCCTGAGCGCGGCGTCGGAGCAGCTGACGCTCGTGTACCAGGGGGAGGTCTACGTCTTCGACCCCGTCCCGCCCCAAAAGGTTCAGGCTGTTCTATTGGTACTTGGAGGGTCTGACATGCCTCCTGGTTTAGTAAGCATGGCTGTACCTACCACATTCGATGAAAAGAGTACAACTGTGGCTGCCAGAAGAGTTGCTTCCTTAATGAGGTTTCGTGAGAAGAGGAAGGAAAGATGTTTTGATAAGAAAATAAGATACAGTGTTCGTAAGGAGGTTGCTCAAAAGATGAAACGACGTAAAGGCCAGTTTGCTGGAAGGGCAGACTTTGGTGATGGTTCATGTTCTTCTGCACCATGCGGCTCCACAGCCAATGGCGAGGATGATCATATCCGAGAAACGCATTGCCAAAATTGTGGCATCAGCTCAAGGCTTACTCCAGCAATGCGTCGTGGGCCAGCTGGTCCAAGGTCCCTCTGTAATGCCTGTGGCCTAATGTGGGCAAACAAGGGCACCCTAAGAAGTCCTTTGAATGCCCCCAAAATGACTGTGCAGCATCCTGCTGATCTGAGTAAAACGGGTGATACAGATGACAGCAAAGCAAATCTGTGTGCTGAGCATAATCAAACCACTATGAAAACTGACACTGAGATGGTGCCAGAGCAGGAGCAGAAGGCAGACGTGTTGCCACCAACCAAAGAAGAAGATAGCATGGCTACCTCGTGA
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| Protein seq | MAAEPPADGRDPPADDGAAGDGAVESAAAEALLSAASEQLTLVYQGEVYVFDPVPPQKVQAVLLVLGGSDMPPGLVSMAVPTTFDEKSTTVAARRVASLMRFREKRKERCFDKKIRYSVRKEVAQKMKRRKGQFAGRADFGDGSCSSAPCGSTANGEDDHIRETHCQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMTVQHPADLSKTGDTDDSKANLCAEHNQTTMKTDTEMVPEQEQKADVLPPTKEEDSMATS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.463402 | 2.287158 | 4.862582 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52450 | RBH | 1.625509 | 1.490236 | 1.064350 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0734900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033710 | RBH | 0.210941 | 11.973645 | 2.071410 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033410 | RBH | 0.209833 | 3.860010 | 1.340370 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033500 | RBH | 0.000000 | 2.606780 | 5.228786 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033790 | RBH | 0.145088 | 0.123750 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033420 | RBH | 8.165337 | 2.563547 | 9.063559 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0513700 | RBH | 6.89827 | 24.74228 | 2.997945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033210 | RBH | 0.286241 | 0.262809 | 2.342229 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0513900 | RBH | 8.3337925 | 23.259572 | 1.6082205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033660 | RBH | 0.349763 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033650 | RBH | 0.688963 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033400 | RBH | 5.546101 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033400 | RBH | 0.364234 | 0.430141 | 0.756437 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033410 | RBH | 0.300579 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G033150 | RBH | 0.606756 | 0.000000 | 1.101576 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032980 | RBH | 1.127070 | 9.728628 | 7.543425 |
