Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0727200 | OGI:03083040 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:29626761-29632749 | ||||||||
| Gene Symbol | OSH3, OsH3, H3, HOS13 | ||||||||||
| DNA seq | GCTGAGATTTCATTTCTTGATTGGTCCAATGTCCAAGCTGACTTTCCCTTTGGGGAAAAACATATGAAACCATCATCAACAACCCTACTATATGTAACAGGCAAGGGCAGTTCAGATTAATTCCAGATGGCGGCAACGGGCGAATCGAGCAACGGCTATGCGCGCCACACGCCATGATCCGGCCTGGCGGTGTACACGGCCGATGCCGGAGCCGCCGCCGTCGCTCCGACGAGGCGGGCGTCGACGTCGACGTAGAACGCCGCCGCGGCATCGGTGCTCTGGTGGTGGTAGGCCTCCATGACGGCGAACTCCATCTCCTCCGTGGGCTTCCAGTGGCGCTTCCGCTGGTTGATGAAACAGTTGTTGATCTGCTTCTGCTCCAGCCCCGTCGACTCGGCGAGGGCGATCTTCTCCATCTCCGACGGGTTCGGCCACCGGTAATGGAGCTCCCACCAGGTGAGCAGCTTCTGCCTCGCCTCCTTGGGGAGCTTCCCTTTCTTCCTCTTCTTCGACAGCTCCTTCCTCAGGCCTCCCAGGTAACCGCTGTACTTCCTCAGCAGGTGCCTCTTCAGCGCTTTGTCGTCGGAGCGAGGGTCGATGATGCCGAGGTCCTCGTCTTCCGCGGCCTCCATCATCTCCATGCCGCTGCCGTCTTCGTGTTCGTCGTCGTCCGACGAATCGAGGCCGGCTTTGGATTCTGCATGCCATTGTCAAGCCAAAGGTATTAAGAATTCGCGAATAATTAAGTAGTTCTGCACCAAGAATTGTTTCTACAATGCACAATGTGATTCGTATAGCTGTAATTGTAATAATAATCTAGGAATGCTAGTTCTCATTTTCTCTGTTATATACTACTCGGTGCTATTCCCCCCCCCCCCTCCCTGCCATTTTGCTTAAACAAATGCAGGAATTACTAGGCAACAAAATATTTGGAAGTGCACGAGTCAATGAAATAAAATTGTTATAAAATCTGCGGCGTTCAATTACATTCCCGCTACTGTATATGCACACGTTCTTCAATATAAAATCTGCTCTAGGGCCCTGTTTAGTTCACACCAAACTTCCCCCAAACTCCCAACTTTACATCACATCACATCACATCTAAAACTTTACTACTCACATAAACTTCCAACTTTTTTTCCAAACTAACAACTTTTCCCAAACTTCTCCCCAATTTCAGAAACTAAACACAGCCTAACTAACTAGTCCCTATGTGCTAAAGGCACAACTGTAAGAGAACAGAGGGTTCTCAATTAGGATTACAATAAAGCACAAGTGATAACACAAACAACTACAGCTCGATTTTTATGTCCAGAAGAACGATGAACGCTAGTTTAGTTTGTACAAAATGGTTAGATCGAAAGCATGATTCTGCATATGCAACTGCTTTTACCCATGCCTATATTATTGGGAAAACAGAAGGTGAAACCTTCTAAGAAGATGCATGGAACAACATAAGGAAAAAAACAAACTGTCACATGAAACTGCATATTCCATAAAATTTTATATACAAGACGCTCTAGAAATTCTAGTGAATGTCCCTCTTTTCCTCTATATATACGCCCTTGCTAATGGAGGGCAGCTATCTCTGTCATGCATAATTTGGTATCATTTTCAATAGGTAGTAACAATAGGGAACAGGGTCATTTTGACAAATCAATTCATGCCCAAGTTTAAAATGGCATACTAGTATGTCTAGCTAAATGAGAGAGAACAGGGTACAAAAAAGTTATCGTGCGTTCTATATATAACATTGTCGTTCTTACCTCATTAAATTTGCTGCCACAAGTCCACAACACCTTTTGTTTTAGTTAGAGCGAGCATGACAGTAAGTAGACTATAAGAGTTACCACACCATATTTGTGTTTAGGACTACTAATTTGTAGCCAGCTGTAAGTAACAAGAATTGCAACAAGCTGTGGGAGAGAGAAAGGTAGGCCAATTGTTAATCTTGTGGTATATATCTGTAGTTAATTATTGTATGAATGAGCTATTAGGTTAGTTATAGATGTTGTGGCAATTTTATAGATAGTTGTTAGCTATACTATTAAACTTGCTCATAGTTGGTACCATATTTAATAGTATGGACACTAGATGAGTTTGAGCAAGGGGAATGCTTTCGTATATGTATTATTTGTATTACCAATTTCAATTATTTACACAACTAGATCATTGAAGATCATAAATATTTAACGTTTAGGGTAAGATTCGGTCAAAAAATTAAAATTCCGATAAATTAATTTTTATATTAGATTAAGTCGATACAATCTAAAAAGTTTATAATATTATGATAGTGCTTTTCAAAACAAATCTACATGTATCATTTCTTTTGTTTTAAAAAAAATCATTTGAGAAATTTTTGATGATACGAAATTTACAATTTTGACTGAACCTTGTCCTAATAAACGTTAAATATTTTTTACCGCAAAAGAGTACTTTGTGGCTAGCGAGAGAAGATCTAGAGAGATGCCCAAAAGAAGGAAGAATGCTACAGTTATTCAGTCATGTCCAAATAAAAGTGGCATTCCCTTGTATCCAAACTTCCAAAGTTCCAAACCAATCCACCCATAAGAGTTGCCCCAAAAGGCTTATCCGCTTCTCAACATATATTAAAATTCAGTAAAGCTAACTTTCAAAGGAAGAAACAGTGGACGAGACAAGTCATGAACAAGATCATAGCTCATATATAACTAGCTAGCAATTAGCTAGACAAATGCCGACACTGTTCACTAACTACGCAAACCAAGTACATCCCCCAACACATCGATTTTGTAACTCTCGTGTGTCAAGGACGTAGGTGATAGGTCGCTGTGGGTACAGGCAATCAGAACACTAGTGATCTTTAGAACTTGTAGGTGCAGACGTACAGTAGGGAAGCACATGAACCCACATATACCTCAATCACGCTACATGTTTGTGATAGAAATCGCATAATAATCCTACGGAATGCATGGGTTATGCCTAGTTAGGCTGCCCAAATTATAATACCTACAACAGTACAACTAACAGGGGTTAAAGAAGAAAAAACACCATAACGTGGAGCATAATCAAGTTCAATCTCGAGATCGAACCGTTCCATATGGATGTTGCCGGCAATATCTAATTATTTGGCCATTGTTACATACTCCCTCCGTCTCGAAATATAAGTATTTTTAGCTATAAATCTGGACAACTGTGTGTTTAGATTTATAGCTAAAAGTGACTATATTTTGGGACGGAAGTAGTATAAGAGTAGAGATATAAGAGTATGTATAATCCTACGAGTTTCTCCATACATTTACGATACAGCTTAATTTATTATTCATGCTAGTATTGAGTTAGAGACCATGAGAAAAGGAACGCCCTACATTTTTGGACAGATGGATATTACTAGCATTAAGACACAAATTAACAAGTTTATTGAGGTTTTCAATATCTTTTGTTTGACATAAACATACTACGTAAACTATATCCTCTATGTACTTAGTCTTAAGAGTACAATTACTTAGTCTTAAGAGTACAATTATTTCTCCAACAATGTAACAAATAAATTAATTCATGTAAAATTCCCGTATCACAAAGCATATATTTTGTTCCTTTCTATTGTACGGAGTAGTAATTTACACCACGTATACCTCCCTAGTGACTATTTTGCTGAATCCAAATAATAATTAAGCATAATCTCGTAGCCATGTTGTCCTCTAGCTAAGGGGCTCTTTGGTACGTCCTACTTTGAGACTGCAGCTGAGTTAAGAAGCGACGTGAATGCCAATCCACCCTCGTAGTGTAATTTTAATAGGCAAAGCGATAACTACACTCTATATTATCTAAAATCTCGAGAATGTTTGGTACAATTCTAACTCTATTGGACAAGAATCCCAAAGCAGAAATTATACCAAATAAGCCCTAAAAAAGAAAAAAGTGGAAAAAGACAAAGCAAAGATAAAACACATTCGATGTGCACTCATGATTTAAAAGTCATAGATGTATGGTTTTTCCTCCTCATGTTTAAATATTAGTACCGCACAATTACTCATGCGGGCATACATTTTAGATGGGATTTTAGTGAAATGGGTTGTTCGTTACAAGGGCGGAGATAAGCCTAGGATAGTTTGGGCTTGAGCCCTAGGCTTGCTTCCATAATCATGTTTAAATTCTTTTAATCCACTATATATTTTTATGAGAAAAAAATAATATTTCATTAGTTGAGCCCTACTCAGCTCTAGGTTTTGTTAATTTCTAGTTCTGTCATTGTTATTGTTTATTACTGGGTTCTCTTTAAGTGTGTTAGAGACACATTTGTATGACGTATATATACAGTTGCATGTCCGCATGGATTTTAGCAAGACCTGTATTATTGGTCTCGTTATTTTTGAACGTGTGTTAGGAGACACATTTTGTGTACGTAATATGCATGTGGTGGTACGTGCGAGTGTGTTTTTGGTAGGAGTGAAAAAAAAAGGGGTTAAGTTACAAATACCTGAGATTAGAGCTGTAAGGGGTGGCCCAGAATTGATGGAGTTGAGCTCTGACTCCACCGTCCTGAGGAACTCCTCGGCCTCCTGGAGCGGCCGGCTGAGCTCCTCCTTACACTCCACGAGCAGCTTGCAGTAATCCTCCTGATGCCAACACGTCACGTCATTAATTATTCGTTAATGATTAACCACACAGCAGATTAACCCAAGTAAAACGCCGCCCTTAACAAGATCTCTAATCATCTATTCCATCTTATAGTACTGTAGTTACTAAATTACACAGTGCATCATGTCATGTCTAGTTGATGTAATCATGTACACTACAGTTACTAATTTGAGCTCTTTCATAATGCTGCAGACCATGAACTGGTCGAGCTCCGGGTCCTCCGGCGCCGGCGGCATGCGGCTCGCCGCCGCGGCCGCCCGCTGCCGCGCCTCCCGCACCCGCGCCGCCGCCGCGATCTCCTCGGCCGCCTCCGCCGGGCAGCCAACCTACAGGCATATCACAAGTTAATTAGAAACATGCATGCGAATTGCAAGTTTGCAACATGGGCAAATACATCCATCGATCTCTATGATCTACAACAATGTGCATTTAGCGGTTAGCTTCTCGAACCGTTATAACGGGTTAAATGGAGCTATAGCGGCTAAATTATACATGATGAGAGCAAATAGTTAGAACCATTCTCTAACCGTTATAATGGGAGATAGCGGCAGTTTAGCGGGAGATTTAAAACCCCGATCTACACACACAAATCAAGAACATGCGCGGCGCATGTGTTCATCGTGCCTTGTGGCAGTCGAGGAAGGCGGCGAGGAGGCGGTGGTAGCGAGGGTGGGAGACGATCCTGGCCTTGACAGGGTCGTCAAGAACTCCGGCGGCGCGGCCGCCGCCGTCGCCGCCGTCCCGCGTCGCCGGTGCAACAGCCTGACGAGCTCCGCCTGCAGCGGCGGCGGAGGCGGCGGTGGACGAGCTAGGAACGGTGTAGACTTGCACGGAGACCTTGGGAAACGGCAGCAACGGAGGAGGAGGAGGCAGCCGGCCTTCACCCCGGTGGCCTTCAAGCTCCTCCATTAGCGTATGTGCTTGATGAGGGTTTCTTGGTACACGACACCGACCAGCTCAGCAAGGAAGAAGAGAAGGCTAATTATCAGTTTATCACAGCTATTGGGAGTACTTAGCTAGGGCTAATCCTGCTGATTTCTTTTGGTTAGAATGACGATTTGTGGGGGTTTGTAAAGCTAGGCGAAGTGGGGGGGAATAATTAAAGGAGGAGGGAAACAGTGGAGAGGAAAAGAAATGGGGGGAAATATCGGATGAGTGGCTGCACAGAGATGAGATTGCGTTTTGCATAGAGAGGGTGTGTAGACTGTAGTAGAGGCTACTGCTAGAAGGAAAGAGGGGTAGGGTAGGGGAGAGCTAGTAGGAAAAGAGAGGTCGGGTGGCCGTCACGTCCATTGTCAAATCAGATAAAAGCAGCCGGCCGCAGCTGGTGTAATGGCTGGTGTAATAATTTTGAATGGCTTGTTTTTAT
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| CDS seq | ATGGAGGAGCTTGAAGGCCACCGGGGTGAAGGCCGGCTGCCTCCTCCTCCTCCGTTGCTGCCGTTTCCCAAGGTCTCCGTGCAAGTCTACACCGTTCCTAGCTCGTCCACCGCCGCCTCCGCCGCCGCTGCAGGCGGAGCTCGTCAGGCTGTTGCACCGGCGACGCGGGACGGCGGCGACGGCGGCGGCCGCGCCGCCGGAGTTCTTGACGACCCTGTCAAGGCCAGGATCGTCTCCCACCCTCGCTACCACCGCCTCCTCGCCGCCTTCCTCGACTGCCACAAGGTTGGCTGCCCGGCGGAGGCGGCCGAGGAGATCGCGGCGGCGGCGCGGGTGCGGGAGGCGCGGCAGCGGGCGGCCGCGGCGGCGAGCCGCATGCCGCCGGCGCCGGAGGACCCGGAGCTCAAATTAGTAACTGAGGATTACTGCAAGCTGCTCGTGGAGTGTAAGGAGGAGCTCAGCCGGCCGCTCCAGGAGGCCGAGGAGTTCCTCAGGACGGTGGAGTCAGAGCTCAACTCCATCAATTCTGGGCCACCCCTTACAGCTCTAATCTCAGAATCCAAAGCCGGCCTCGATTCGTCGGACGACGACGAACACGAAGACGGCAGCGGCATGGAGATGATGGAGGCCGCGGAAGACGAGGACCTCGGCATCATCGACCCTCGCTCCGACGACAAAGCGCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTGGGAGGCCTGAGGAAGGAGCTGTCGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCGAGGCAGAAGCTGCTCACCTGGTGGGAGCTCCATTACCGGTGGCCGAACCCGTCGGAGATGGAGAAGATCGCCCTCGCCGAGTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTCATCAACCAGCGGAAGCGCCACTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAGGCCTACCACCACCAGAGCACCGATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGCCTCGTCGGAGCGACGGCGGCGGCTCCGGCATCGGCCGTGTACACCGCCAGGCCGGATCATGGCGTGTGGCGCGCATAG
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| Protein seq | MEELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGARQAVAPATRDGGDGGGRAAGVLDDPVKARIVSHPRYHRLLAAFLDCHKVGCPAEAAEEIAAAARVREARQRAAAAASRMPPAPEDPELKLVTEDYCKLLVECKEELSRPLQEAEEFLRTVESELNSINSGPPLTALISESKAGLDSSDDDEHEDGSGMEMMEAAEDEDLGIIDPRSDDKALKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHWKPTEEMEFAVMEAYHHQSTDAAAAFYVDVDARLVGATAAAPASAVYTARPDHGVWRA |
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| Function | Homeobox protein knotted-1-like 7 [UniProtKB/Swiss-Prot:Q948L5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0727200 | OsNip_03t0727200-00 | Chr03 | 29626761 | 29632749 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGGAGCTTGAAGGCCACCGGGGTGAAGGCCGGCTGCCTCCTCCTCCTCCGTTGCTGCCGTTTCCCAAGGTCTCCGTGCAAGTCTACACCGTTCCTAGCTCGTCCACCGCCGCCTCCGCCGCCGCTGCAGGCGGAGCTCGTCAGGCTGTTGCACCGGCGACGCGGGACGGCGGCGACGGCGGCGGCCGCGCCGCCGGAGTTCTTGACGACCCTGTCAAGGCCAGGATCGTCTCCCACCCTCGCTACCACCGCCTCCTCGCCGCCTTCCTCGACTGCCACAAGGTTGGCTGCCCGGCGGAGGCGGCCGAGGAGATCGCGGCGGCGGCGCGGGTGCGGGAGGCGCGGCAGCGGGCGGCCGCGGCGGCGAGCCGCATGCCGCCGGCGCCGGAGGACCCGGAGCTCAAATTAGTAACTGAGGATTACTGCAAGCTGCTCGTGGAGTGTAAGGAGGAGCTCAGCCGGCCGCTCCAGGAGGCCGAGGAGTTCCTCAGGACGGTGGAGTCAGAGCTCAACTCCATCAATTCTGGGCCACCCCTTACAGCTCTAATCTCAGAATCCAAAGCCGGCCTCGATTCGTCGGACGACGACGAACACGAAGACGGCAGCGGCATGGAGATGATGGAGGCCGCGGAAGACGAGGACCTCGGCATCATCGACCCTCGCTCCGACGACAAAGCGCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTGGGAGGCCTGAGGAAGGAGCTGTCGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCGAGGCAGAAGCTGCTCACCTGGTGGGAGCTCCATTACCGGTGGCCGAACCCGTCGGAGATGGAGAAGATCGCCCTCGCCGAGTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTCATCAACCAGCGGAAGCGCCACTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAGGCCTACCACCACCAGAGCACCGATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGCCTCGTCGGAGCGACGGCGGCGGCTCCGGCATCGGCCGTGTACACCGCCAGGCCGGATCATGGCGTGTGGCGCGCATAG
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| Protein seq | MEELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGARQAVAPATRDGGDGGGRAAGVLDDPVKARIVSHPRYHRLLAAFLDCHKVGCPAEAAEEIAAAARVREARQRAAAAASRMPPAPEDPELKLVTEDYCKLLVECKEELSRPLQEAEEFLRTVESELNSINSGPPLTALISESKAGLDSSDDDEHEDGSGMEMMEAAEDEDLGIIDPRSDDKALKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHWKPTEEMEFAVMEAYHHQSTDAAAAFYVDVDARLVGATAAAPASAVYTARPDHGVWRA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.687793 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g51710 | RBH | 0.000000 | 0.000000 | 0.136617 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0727200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033250 | RBH | 0.0 | 0.0 | 0.321045 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0032950 | RBH | 0.0 | 0.0 | 1.063477 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033020 | RBH | 0.0 | 0.0 | 1.969877 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0032920 | RBH | 0.000000 | 0.000000 | 2.346198 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0506900 | RBH | 0.1516805 | 0.040641 | 2.8358745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032660 | RBH | 0.0 | 0.0 | 0.154185 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0507200 | RBH | 0.243828 | 0.092843 | 5.553438 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033100 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0032900 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0032860 | RBH | 0.0 | 0.0 | 0.766733 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0032840 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032670 | RBH | 0.0 | 0.0 | 1.352677 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032500 | RBH | 0.0 | 0.0 | 2.995193 |
