Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0718500 | OGI:03081620 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:29090580-29091512 | ||||||||
| Gene Symbol | OsZHD11 | ||||||||||
| DNA seq | GAGAGGACTAGAGGAGGAGGAAGAAGCAGCAATGGAGCAGCAGCAGGAGCGGCCGCGGGAGGTGTACAGGGAGTGCATGCGCAACCACGCGGCGAAGCTGGGGACCTACGCGAACGACGGCTGCTGCGAGTACACCCCCGACGACGGCCACCCGGCGGGCCTGCTCTGCGCGGCGTGCGGCTGCCACCGCAACTTCCACCGGAAGGACTTCCTCGACGGCCGCGCCACCGCCGCCGCCGGAGGGGCGGGAGGCGCCGGCGTCGGCGTCGCGCCAATGCTGCCGGCCCCCGGTGGAGGCGGGCCGCCGGGATACATGCACATGGCGGCGATGGGAGGAGCGGTGGGCGGCGGCGGCGGCGTCGACGGCGGCGGCGGCTCCGGGGGGAGGCGGCGGACGCGGACCAAGTTCACGGAGGAGCAGAAGGCGCGGATGCTGCGGTTCGCGGAGCGGCTCGGGTGGCGGATGCCGAAGCGGGAGCCCGGCCGCGCGCCCGGGGACGACGAGGTGGCGCGCTTCTGCCGGGAGATCGGCGTCAACCGGCAGGTCTTCAAGGTGTGGATGCACAACCACAAGGCCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCCCCGGCGCCGGTGGAGGCGCCCAGACGTCGTCGTCGACGACCAGGGGCGGCGGCGACGTCGGGGTGGGCTTGTCGCCGGCGATGGGCGGCGACGGCGAGGACGACGAGGAGGTGAGGGGGAGCGAGATGTGCATGTAGGAGCCACGTACTTACGTAATGCAGGCAGCATTGCAAATTTGCAATTGCATTGCTAGGGTGGGATAATTCACAATTTAATTAACTCTCTCTTTTTTTTTGCTAATTTCTTTTATTTTTTGCTTCCCTGAGTTGATTCTTGCTGATGAGATTGATTGTTTTAACGGTGCCACTAATTAATTGTGTGT
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| CDS seq | ATGGAGCAGCAGCAGGAGCGGCCGCGGGAGGTGTACAGGGAGTGCATGCGCAACCACGCGGCGAAGCTGGGGACCTACGCGAACGACGGCTGCTGCGAGTACACCCCCGACGACGGCCACCCGGCGGGCCTGCTCTGCGCGGCGTGCGGCTGCCACCGCAACTTCCACCGGAAGGACTTCCTCGACGGCCGCGCCACCGCCGCCGCCGGAGGGGCGGGAGGCGCCGGCGTCGGCGTCGCGCCAATGCTGCCGGCCCCCGGTGGAGGCGGGCCGCCGGGATACATGCACATGGCGGCGATGGGAGGAGCGGTGGGCGGCGGCGGCGGCGTCGACGGCGGCGGCGGCTCCGGGGGGAGGCGGCGGACGCGGACCAAGTTCACGGAGGAGCAGAAGGCGCGGATGCTGCGGTTCGCGGAGCGGCTCGGGTGGCGGATGCCGAAGCGGGAGCCCGGCCGCGCGCCCGGGGACGACGAGGTGGCGCGCTTCTGCCGGGAGATCGGCGTCAACCGGCAGGTCTTCAAGGTGTGGATGCACAACCACAAGGCCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCCCCGGCGCCGGTGGAGGCGCCCAGACGTCGTCGTCGACGACCAGGGGCGGCGGCGACGTCGGGGTGGGCTTGTCGCCGGCGATGGGCGGCGACGGCGAGGACGACGAGGAGGTGAGGGGGAGCGAGATGTGCATGTAG
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| Protein seq | MEQQQERPREVYRECMRNHAAKLGTYANDGCCEYTPDDGHPAGLLCAACGCHRNFHRKDFLDGRATAAAGGAGGAGVGVAPMLPAPGGGGPPGYMHMAAMGGAVGGGGGVDGGGGSGGRRRTRTKFTEEQKARMLRFAERLGWRMPKREPGRAPGDDEVARFCREIGVNRQVFKVWMHNHKAGGGGGGGGSGGPGAGGGAQTSSSTTRGGGDVGVGLSPAMGGDGEDDEEVRGSEMCM |
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| Function | Zinc-finger homeodomain protein 11 [UniProtKB/Swiss-Prot:Q10DV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0718500 | OsNip_03t0718500-00 | Chr03 | 29090580 | 29091512 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCAGCAGCAGGAGCGGCCGCGGGAGGTGTACAGGGAGTGCATGCGCAACCACGCGGCGAAGCTGGGGACCTACGCGAACGACGGCTGCTGCGAGTACACCCCCGACGACGGCCACCCGGCGGGCCTGCTCTGCGCGGCGTGCGGCTGCCACCGCAACTTCCACCGGAAGGACTTCCTCGACGGCCGCGCCACCGCCGCCGCCGGAGGGGCGGGAGGCGCCGGCGTCGGCGTCGCGCCAATGCTGCCGGCCCCCGGTGGAGGCGGGCCGCCGGGATACATGCACATGGCGGCGATGGGAGGAGCGGTGGGCGGCGGCGGCGGCGTCGACGGCGGCGGCGGCTCCGGGGGGAGGCGGCGGACGCGGACCAAGTTCACGGAGGAGCAGAAGGCGCGGATGCTGCGGTTCGCGGAGCGGCTCGGGTGGCGGATGCCGAAGCGGGAGCCCGGCCGCGCGCCCGGGGACGACGAGGTGGCGCGCTTCTGCCGGGAGATCGGCGTCAACCGGCAGGTCTTCAAGGTGTGGATGCACAACCACAAGGCCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCCCCGGCGCCGGTGGAGGCGCCCAGACGTCGTCGTCGACGACCAGGGGCGGCGGCGACGTCGGGGTGGGCTTGTCGCCGGCGATGGGCGGCGACGGCGAGGACGACGAGGAGGTGAGGGGGAGCGAGATGTGCATGTAG
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| Protein seq | MEQQQERPREVYRECMRNHAAKLGTYANDGCCEYTPDDGHPAGLLCAACGCHRNFHRKDFLDGRATAAAGGAGGAGVGVAPMLPAPGGGGPPGYMHMAAMGGAVGGGGGVDGGGGSGGRRRTRTKFTEEQKARMLRFAERLGWRMPKREPGRAPGDDEVARFCREIGVNRQVFKVWMHNHKAGGGGGGGGSGGPGAGGGAQTSSSTTRGGGDVGVGLSPAMGGDGEDDEEVRGSEMCM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g50920 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0718500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0032610 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0032320 | RBH | 0.106995 | 0.473923 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0032380 | RBH | 0.0 | 2.713159 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0032480 | RBH | 0.0 | 0.058429 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0032200 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0499700 | RBH | 0.411955 | 0.359394 | 1.1137435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031850 | RBH | 0.0 | 0.162124 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0499200 | RBH | 0.370856 | 0 | 1.0684655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0032270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0032300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0032290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0032060 | RBH | 0.0 | 0.0 | 0.026061 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0032080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032040 | RBH | 0.0 | 1.084669 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0031890 | RBH | 0.0 | 0.0 | 0.0 |
