Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0711400 | OGI:03080670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:28719395-28724712 | ||||||||
| Gene Symbol | OsWD40-84 | ||||||||||
| DNA seq | GCAAAATTCACTAATCTATAAACTGTTCTTGCCCGAGCACAATCCACACACGTCTGGATTGAAATTTACAACACTAAGCGTAATTTGTTAACTTGGTCATTGGCAACTGTTACATTCATAGTTACTAATGAATGTAACTAACACGACGCCGAATGTTTACATGAGTGAAACAAACATTGGTACATAACGTCCGAGCATAGCATTTGCATGAGCTGATCAGAAGTCCTCAAGCATGTATCAAGTGTAACAACAGCCTCGAGGCAAACAAAAATCAAGGGAAATGGAGAAAAAGTGAAACAAAAACTCAACCATGTATAACACTACTTATTCCTTACAATCAGTAAACATCCTGGTAAAATATATCATAGCGAAGTCTTAAGAGAGACTAGAAAGAATATAAGGGAGCATATCTACCGACGCTTATCTCGACTGCGTAGGGGAGCAGAGGAGGCCTGAAGCATCTGCACCAACCACGGCAAGCTCACATATGGTACAAAGCTGCCCTTCGATCGAAGGAACAAACCGGGAGCCACAGTACGGGCAGGAAACATCCTTCTGGCCACGGTAGATTGGAACATACGTGGCGCCACAGACAACAAATGGATTTCTGTAGTCATAGTTCAGCTCAGAGCTATCCTTCTTGCCACTGCACTGCTGCTGCACCTGTCGAGCCCTCCTTGCTTGGGCCTCATTAGGGTTGTTCTCCAGAAGCATCCTTGCAAAGTGCTCTGCAGTAGCGAAGTTCTTTTGCTTGTAGCACAGACCCATAGCGCTTCCAAGCACAAGCCTCATATGAACTCTCTGAAGCTTGCAGTTAGTGAAGTAAGCCGCCAATTCTTGTTGGCGGTTGACATCATCTCTCAGCTCCTTCCTCTTAAGTTCCATCCTCAGGCCAAGAACATACTCCCTCACAATCTCGATCAACTCTTTCACTTCATCCACTTCCCTCCTCGAGTCTACCACGATAAGAGGGATGGTATGCAAGATGCTAAGGAACTGCCTCAGGGCTTCTGGGAACTTACCATCTGTGGTGGCCTTATAGGCAGCCTTGAGTCTGTCTTCCATTTGTGGGAAGGTGAAAACAAGTGCAGGAGGGCCTCTCACGTTAGGACTTGCAGACTCGCTCCAACCTTTCTCAACAGCGATTGGTATTATGGGGGCAGTTGCAAGTGCACGAAGATATGAGTGGCTGCCCATGTGCAGATCAACAAACAGGGGCTTGAGGGGAGCAAAGTTTTTTATGCCCAACTGGCGGCTAAGCAACCTCATTGCAGTGTCAAAGTTCCCTGCTGCGGCATGCTCCCCAGCAAGAGAAGATTTCTGAGTCCAAATCAGGCTGACAGGCATGCCTGGTGGAGGAGCAACGAAGACCGCTGAGCGTGCATTGCCAGCATTTTTAGGGGTCTCTGCTTCAGGCGGAAGTTCCAGATCTTCTAGGTCCCAACCACCTTCCTCGCCATCCTCCTCATTTGCTTCACCCTCCTCAGCATCAAAACCGTCACCACCATTTGCCATCGCTTCGCTTGCATCAACCATATCCAGGTCCTCATCACCCCAGTCAGCACCAGCAGCTTCATCGTCTTCCTCAAGTTCAGCCTTCCCAGTAGCATCCAGTCCACCCTCAAAGATACCATGCATCACCCTAAGCAATGGCCAATCACCACTGGCTGTAAGAGGAGCAGGGGGGATCAAAAGAGAGCGAGCTTTTCCTTCAGGAAGAGAAGGAATATTTTCACCCAGCTCAGCGGCAAGCCTATCAGCAATTTCTGTGAGCCCATGGGTGGTAGCAGTAATATAAGCAAGAGGTAGCTGTCCAGCATTCTCTAGGATCTCAACTCTCTTCAACGCATCACCAAGATACAGAGCATTGTGGAATTGACCCATCAGGTTATTGTTCTGTCCAGCAATTTTGCACATGAAACCCACCTTGTCCATGTAACCAGTAATAAGATATAGGAAAGCAAGCCTCTCAAAATTCTTCGTACGTTGGTATGCATATTCCACAATACCAACATTTCCCTGCCTCAGGGCCTCAATTCCCAACCTGTACCAGTGATCCTTGTCATCAATCTCTTTTGCAGAAGCAACTGCGATTTGGATGTTACCACTCTCAAGAGCAAGGTTAAATCTTGTCTTCTCATCTTTCACAAAGTGGAGGGCAACTTCTGGAAAGCCTTTCTGTTGTAAATAAGAAATCACAGCTTGCCCACACAGCTGGGAATTCTTGATCATACTCATCACATGATCATACCGTTTGCGTAGAAGGGCCAGCTTGAAAATGTACTCAGATGCATCAACTGTGACCAGCTTGTTCTTACCATCACGATCTAGACAGAATATATTGTTCCCAATAACCCTTGTTATGTATATAGGAACATCGAGGGTTTTAATAATCCCACTATCTCCATTGGGAAGGCAATACTTGATATGATTCAGGGTAGTGTAAATAAACACACCATTCTCATCCCAGGCACCACTTTTCACACGAATGGTTTCGTGCAGTGTACAGCGATGGACGAGCTTCTTGTTTGCTATAACCACTGCATGCTTGCTCAGCAGTGCGACAGATTCCATATCACTAGACCAAACAACATATTTAACAGAAGGTGCCTGGAGCTCACCAAGAATTAACCTTTGCTGCAGATCAAAGATGGTCACTCGGTCTTCGGCTTTGCACAGCAAGTTACCAGTCCCAGCATAATAAATTGCATCCGTGGCAATAGGAAGAGGGCTTTTCTTTACGATTTCATTCTTAAGATTCTTCACCAAAACTTGATTGCTACTCTTCTCAAGGACTGCAAACCTGTTGCGTGCCACGAAAACAGCTGACCCACCAGCTCCCTTCTTTGCATCCTGCAAATAGTCAGCCCTGCCAGCAGAATCCTTGGGAACAATGTAGAGTTCGTATGAGCCTCCATCCACATCAGAGCAAATCAGGACAGCATTTTCAGTTGGACTGTAAGATAGTGTCTTGGGTGACTGGTTCAAGCTCACTGATCCAGGTCTTCTTATTGGAGCAAGCTGAACTTCCTTCTGTGTGGTGAATTCAAAAAAACGAAGAAAACGGTCCTTCACATAGAAAACAGTATCTCCACTCACAGAGAAAGCTGGACGTTCCCTCTCCAATTTAAACACAATCATACCACTGTCATGACCAGCGGCAAGAAGATTCATCTCAGGGTGAGCAGAAAGAATCCAGAAACGATCATGTTCCCGCCTGAACGTTTGAATACCGGTTCGCTTTGTGGCATCCCAGATGCGAATGCTTTTGTCCTCTGAGTTGGACACAATGATGTCTTGCTTAGCATGGAACATCACGCATGACACATTATTCATGTGTCCCCGCAAAGTATCAACTTCCCAAGCCTTCGTGTCTGTCCAAAAAAATAGCACATTTAGATTACATTAATTCAAATACCTCAATAGCGGTTTGCTGCATATGCATATAGTTTTGTGTTTGGCCAGTCTAGCAATATGCAGAAGAATGAAGTGCTATGCAACAAGAATGACCACCTTTCATTCCAACCAAAGTGACAAACTAGAGGTCAGGAGCTAGTTACTAATTGAGTAATTGTGAAGCATGTTTCTTGCATTCAGCTTGTTCGGTAATTACTACTTCTGTGAAAGTATGATAAATTGAAGAAAACAAAAGGAATTCATAATAAAATCAAATCCATAGTTTGTAGTAATAATATATGGAAGGACAAATGAATAAAAACACAAATATGCAAGCGTTTATCCATGGAAAATGGTAATAGAAAAGTTTAAGGCCTTGTAGCAGTATTACCATTCATTCTCCATAGCTTCACTTGTCGGTCATCTGCCCCGGAAACAATGAGTGGCAATGTGGGGTGAAATGATGCCCAGTTCACCCCACGGTCATGCCCTTCCAACACATATTTTACAACTGCATCAACACCTCCAAACAGATCTGTGTTCATCTGGGTGAGACGCAGGATGTCATCTGCAGGTGACACCGTCTTCTTCCTCAAAGCACCAATATCCCAAACACGGACAGTCTGATCCAGTGATGCTGACACAACCAGGTCCTCCTTGGGATGGAATGATGCGCACATGACATAGTGGTTATGTCCAGTCAGCACAGCTACACATGTGCGTGACTGCCAGTTCCAGATCCGGATTGTCTGGTCATCACTAGCACTTACTATCCATGGGTATTCGTGGTGGAATTGCACGGTGCGAATATAGTCAAGGTGCCCGTGAAGTGTGAAGAGGCAGCGGTGTGTCTTGTAATTCCACACCTTAATCTTGTAATCATCACCTGCAATGCATCACAGAAATCTTAGAATAGTTCAGAAGTTCAACCATTCCGCATCCCAATCATATTAGTCCACCGAGCAATACGACCGGACACCAGTATGACTTCGTTTCAAGTTTCAACAGATCCCAAAGTCCAGGTTTCAACAAATTCCAAAGGTCCATGATGGCACCTTGCCATCGCTAACTTGCTACTTGTATCAGATTCACACTACAAAAGCTGATTCTCTCTGGTTGAGGGCTACACATCGACTCATTCTACTTCCTATCATATCTCTTCTACGGAAGGATTGCAAAATCGATGGAGATCCCGGTCATAAATAGAAACAAAATGTCACATGAAGGTTTCAAACTAACAATTCACCAAACAGTTCATCTTAAGCTAAGAGAATAGAACCAGCACCAGATCCAACCAACGAGGATCACTTGCACAACCACCACTGTACACGAAACGCGATCTAATCGCAAACCACGTACGCGTGGTATCTACCTCGAGTGTCCTCATTGCACCATGAAATGGATCACGCGGAAATCTAACGGCCACGCGAGACGTCCTCCAAATCCGAGGAGGAGGATCCGACCAAACACGCGTCGACGCCACACCCGACCCCGCGAGCGGCGAACCACCACAGCGAAAAAAAAAATGCTCGAGGCGGGCGAGATCTAGGCAGGGAGGAATCGATGTTTACCTCCGGAGACGAAGAGCGGCTGCGTGGCGTGGAAGTGGACGCCGCGGACGGGGCCGTCGTGCTCGTCGAAGCGGTCGAGGAGGGTGCCCATGCGGTAGTCCCACATCTGGATCACCCCGCTGTGGAGGCTGGCCAGGATCCATGGCCGCCGCGGGTGGAAGCTCAGCCCCTTCACCCGGTTGCTCTTCGTCTCGAACTTGGTCAGCATCTTCTCTAGCCGTCCCCCCGGCGCGACGGCGGCGGCGGCGGCGAAACCCCTCGCCGCTGAGGCGCGCGGAGGAGAGAGAGGGGGGAGGGGGGGTGGTATGGCGTTGGGTGGAGAGGACGAAGGTGTTTTTGAGATCTCGGGGT
More
|
||||||||||
| CDS seq | ATGCTGACCAAGTTCGAGACGAAGAGCAACCGGGTGAAGGGGCTGAGCTTCCACCCGCGGCGGCCATGGATCCTGGCCAGCCTCCACAGCGGGGTGATCCAGATGTGGGACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCCACGCCACGCAGCCGCTCTTCGTCTCCGGAGGTGATGATTACAAGATTAAGGTGTGGAATTACAAGACACACCGCTGCCTCTTCACACTTCACGGGCACCTTGACTATATTCGCACCGTGCAATTCCACCACGAATACCCATGGATAGTAAGTGCTAGTGATGACCAGACAATCCGGATCTGGAACTGGCAGTCACGCACATGTGTAGCTGTGCTGACTGGACATAACCACTATGTCATGTGCGCATCATTCCATCCCAAGGAGGACCTGGTTGTGTCAGCATCACTGGATCAGACTGTCCGTGTTTGGGATATTGGTGCTTTGAGGAAGAAGACGGTGTCACCTGCAGATGACATCCTGCGTCTCACCCAGATGAACACAGATCTGTTTGGAGGTGTTGATGCAGTTGTAAAATATGTGTTGGAAGGGCATGACCGTGGGGTGAACTGGGCATCATTTCACCCCACATTGCCACTCATTGTTTCCGGGGCAGATGACCGACAAGTGAAGCTATGGAGAATGAATGACACGAAGGCTTGGGAAGTTGATACTTTGCGGGGACACATGAATAATGTGTCATGCGTGATGTTCCATGCTAAGCAAGACATCATTGTGTCCAACTCAGAGGACAAAAGCATTCGCATCTGGGATGCCACAAAGCGAACCGGTATTCAAACGTTCAGGCGGGAACATGATCGTTTCTGGATTCTTTCTGCTCACCCTGAGATGAATCTTCTTGCCGCTGGTCATGACAGTGGTATGATTGTGTTTAAATTGGAGAGGGAACGTCCAGCTTTCTCTGTGAGTGGAGATACTGTTTTCTATGTGAAGGACCGTTTTCTTCGTTTTTTTGAATTCACCACACAGAAGGAAGTTCAGCTTGCTCCAATAAGAAGACCTGGATCAGTGAGCTTGAACCAGTCACCCAAGACACTATCTTACAGTCCAACTGAAAATGCTGTCCTGATTTGCTCTGATGTGGATGGAGGCTCATACGAACTCTACATTGTTCCCAAGGATTCTGCTGGCAGGGCTGACTATTTGCAGGATGCAAAGAAGGGAGCTGGTGGGTCAGCTGTTTTCGTGGCACGCAACAGGTTTGCAGTCCTTGAGAAGAGTAGCAATCAAGTTTTGGTGAAGAATCTTAAGAATGAAATCGTAAAGAAAAGCCCTCTTCCTATTGCCACGGATGCAATTTATTATGCTGGGACTGGTAACTTGCTGTGCAAAGCCGAAGACCGAGTGACCATCTTTGATCTGCAGCAAAGGTTAATTCTTGGTGAGCTCCAGGCACCTTCTGTTAAATATGTTGTTTGGTCTAGTGATATGGAATCTGTCGCACTGCTGAGCAAGCATGCAGTGGTTATAGCAAACAAGAAGCTCGTCCATCGCTGTACACTGCACGAAACCATTCGTGTGAAAAGTGGTGCCTGGGATGAGAATGGTGTGTTTATTTACACTACCCTGAATCATATCAAGTATTGCCTTCCCAATGGAGATAGTGGGATTATTAAAACCCTCGATGTTCCTATATACATAACAAGGGTTATTGGGAACAATATATTCTGTCTAGATCGTGATGGTAAGAACAAGCTGGTCACAGTTGATGCATCTGAGTACATTTTCAAGCTGGCCCTTCTACGCAAACGGTATGATCATGTGATGAGTATGATCAAGAATTCCCAGCTGTGTGGGCAAGCTGTGATTTCTTATTTACAACAGAAAGGCTTTCCAGAAGTTGCCCTCCACTTTGTGAAAGATGAGAAGACAAGATTTAACCTTGCTCTTGAGAGTGGTAACATCCAAATCGCAGTTGCTTCTGCAAAAGAGATTGATGACAAGGATCACTGGTACAGGTTGGGAATTGAGGCCCTGAGGCAGGGAAATGTTGGTATTGTGGAATATGCATACCAACGTACGAAGAATTTTGAGAGGCTTGCTTTCCTATATCTTATTACTGGTTACATGGACAAGGTGGGTTTCATGTGCAAAATTGCTGGACAGAACAATAACCTGATGGGTCAATTCCACAATGCTCTGTATCTTGGTGATGCGTTGAAGAGAGTTGAGATCCTAGAGAATGCTGGACAGCTACCTCTTGCTTATATTACTGCTACCACCCATGGGCTCACAGAAATTGCTGATAGGCTTGCCGCTGAGCTGGGTGAAAATATTCCTTCTCTTCCTGAAGGAAAAGCTCGCTCTCTTTTGATCCCCCCTGCTCCTCTTACAGCCAGTGGTGATTGGCCATTGCTTAGGGTGATGCATGGTATCTTTGAGGGTGGACTGGATGCTACTGGGAAGGCTGAACTTGAGGAAGACGATGAAGCTGCTGGTGCTGACTGGGGTGATGAGGACCTGGATATGGTTGATGCAAGCGAAGCGATGGCAAATGGTGGTGACGGTTTTGATGCTGAGGAGGGTGAAGCAAATGAGGAGGATGGCGAGGAAGGTGGTTGGGACCTAGAAGATCTGGAACTTCCGCCTGAAGCAGAGACCCCTAAAAATGCTGGCAATGCACGCTCAGCGGTCTTCGTTGCTCCTCCACCAGGCATGCCTGTCAGCCTGATTTGGACTCAGAAATCTTCTCTTGCTGGGGAGCATGCCGCAGCAGGGAACTTTGACACTGCAATGAGGTTGCTTAGCCGCCAGTTGGGCATAAAAAACTTTGCTCCCCTCAAGCCCCTGTTTGTTGATCTGCACATGGGCAGCCACTCATATCTTCGTGCACTTGCAACTGCCCCCATAATACCAATCGCTGTTGAGAAAGGTTGGAGCGAGTCTGCAAGTCCTAACGTGAGAGGCCCTCCTGCACTTGTTTTCACCTTCCCACAAATGGAAGACAGACTCAAGGCTGCCTATAAGGCCACCACAGATGGTAAGTTCCCAGAAGCCCTGAGGCAGTTCCTTAGCATCTTGCATACCATCCCTCTTATCGTGGTAGACTCGAGGAGGGAAGTGGATGAAGTGAAAGAGTTGATCGAGATTGTGAGGGAGTATGTTCTTGGCCTGAGGATGGAACTTAAGAGGAAGGAGCTGAGAGATGATGTCAACCGCCAACAAGAATTGGCGGCTTACTTCACTAACTGCAAGCTTCAGAGAGTTCATATGAGGCTTGTGCTTGGAAGCGCTATGGGTCTGTGCTACAAGCAAAAGAACTTCGCTACTGCAGAGCACTTTGCAAGGATGCTTCTGGAGAACAACCCTAATGAGGCCCAAGCAAGGAGGGCTCGACAGGTGCAGCAGCAGTGCAGTGGCAAGAAGGATAGCTCTGAGCTGAACTATGACTACAGAAATCCATTTGTTGTCTGTGGCGCCACGTATGTTCCAATCTACCGTGGCCAGAAGGATGTTTCCTGCCCGTACTGTGGCTCCCGGTTTGTTCCTTCGATCGAAGGGCAGCTTTGTACCATATGTGAGCTTGCCGTGGTTGGTGCAGATGCTTCAGGCCTCCTCTGCTCCCCTACGCAGTCGAGATAA
More
|
||||||||||
| Protein seq | MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILSAHPEMNLLAAGHDSGMIVFKLERERPAFSVSGDTVFYVKDRFLRFFEFTTQKEVQLAPIRRPGSVSLNQSPKTLSYSPTENAVLICSDVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVFVARNRFAVLEKSSNQVLVKNLKNEIVKKSPLPIATDAIYYAGTGNLLCKAEDRVTIFDLQQRLILGELQAPSVKYVVWSSDMESVALLSKHAVVIANKKLVHRCTLHETIRVKSGAWDENGVFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITRVIGNNIFCLDRDGKNKLVTVDASEYIFKLALLRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEIDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGFMCKIAGQNNNLMGQFHNALYLGDALKRVEILENAGQLPLAYITATTHGLTEIADRLAAELGENIPSLPEGKARSLLIPPAPLTASGDWPLLRVMHGIFEGGLDATGKAELEEDDEAAGADWGDEDLDMVDASEAMANGGDGFDAEEGEANEEDGEEGGWDLEDLELPPEAETPKNAGNARSAVFVAPPPGMPVSLIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKPLFVDLHMGSHSYLRALATAPIIPIAVEKGWSESASPNVRGPPALVFTFPQMEDRLKAAYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNEAQARRARQVQQQCSGKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQSR |
||||||||||
| Function | Coatomer subunit alpha-1 [UniProtKB/Swiss-Prot:Q9AUR8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0711400 | OsNip_03t0711400-01 | Chr03 | 28719395 | 28724712 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTGACCAAGTTCGAGACGAAGAGCAACCGGGTGAAGGGGCTGAGCTTCCACCCGCGGCGGCCATGGATCCTGGCCAGCCTCCACAGCGGGGTGATCCAGATGTGGGACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCCACGCCACGCAGCCGCTCTTCGTCTCCGGAGGTGATGATTACAAGATTAAGGTGTGGAATTACAAGACACACCGCTGCCTCTTCACACTTCACGGGCACCTTGACTATATTCGCACCGTGCAATTCCACCACGAATACCCATGGATAGTAAGTGCTAGTGATGACCAGACAATCCGGATCTGGAACTGGCAGTCACGCACATGTGTAGCTGTGCTGACTGGACATAACCACTATGTCATGTGCGCATCATTCCATCCCAAGGAGGACCTGGTTGTGTCAGCATCACTGGATCAGACTGTCCGTGTTTGGGATATTGGTGCTTTGAGGAAGAAGACGGTGTCACCTGCAGATGACATCCTGCGTCTCACCCAGATGAACACAGATCTGTTTGGAGGTGTTGATGCAGTTGTAAAATATGTGTTGGAAGGGCATGACCGTGGGGTGAACTGGGCATCATTTCACCCCACATTGCCACTCATTGTTTCCGGGGCAGATGACCGACAAGTGAAGCTATGGAGAATGAATGACACGAAGGCTTGGGAAGTTGATACTTTGCGGGGACACATGAATAATGTGTCATGCGTGATGTTCCATGCTAAGCAAGACATCATTGTGTCCAACTCAGAGGACAAAAGCATTCGCATCTGGGATGCCACAAAGCGAACCGGTATTCAAACGTTCAGGCGGGAACATGATCGTTTCTGGATTCTTTCTGCTCACCCTGAGATGAATCTTCTTGCCGCTGGTCATGACAGTGGTATGATTGTGTTTAAATTGGAGAGGGAACGTCCAGCTTTCTCTGTGAGTGGAGATACTGTTTTCTATGTGAAGGACCGTTTTCTTCGTTTTTTTGAATTCACCACACAGAAGGAAGTTCAGCTTGCTCCAATAAGAAGACCTGGATCAGTGAGCTTGAACCAGTCACCCAAGACACTATCTTACAGTCCAACTGAAAATGCTGTCCTGATTTGCTCTGATGTGGATGGAGGCTCATACGAACTCTACATTGTTCCCAAGGATTCTGCTGGCAGGGCTGACTATTTGCAGGATGCAAAGAAGGGAGCTGGTGGGTCAGCTGTTTTCGTGGCACGCAACAGGTTTGCAGTCCTTGAGAAGAGTAGCAATCAAGTTTTGGTGAAGAATCTTAAGAATGAAATCGTAAAGAAAAGCCCTCTTCCTATTGCCACGGATGCAATTTATTATGCTGGGACTGGTAACTTGCTGTGCAAAGCCGAAGACCGAGTGACCATCTTTGATCTGCAGCAAAGGTTAATTCTTGGTGAGCTCCAGGCACCTTCTGTTAAATATGTTGTTTGGTCTAGTGATATGGAATCTGTCGCACTGCTGAGCAAGCATGCAGTGGTTATAGCAAACAAGAAGCTCGTCCATCGCTGTACACTGCACGAAACCATTCGTGTGAAAAGTGGTGCCTGGGATGAGAATGGTGTGTTTATTTACACTACCCTGAATCATATCAAGTATTGCCTTCCCAATGGAGATAGTGGGATTATTAAAACCCTCGATGTTCCTATATACATAACAAGGGTTATTGGGAACAATATATTCTGTCTAGATCGTGATGGTAAGAACAAGCTGGTCACAGTTGATGCATCTGAGTACATTTTCAAGCTGGCCCTTCTACGCAAACGGTATGATCATGTGATGAGTATGATCAAGAATTCCCAGCTGTGTGGGCAAGCTGTGATTTCTTATTTACAACAGAAAGGCTTTCCAGAAGTTGCCCTCCACTTTGTGAAAGATGAGAAGACAAGATTTAACCTTGCTCTTGAGAGTGGTAACATCCAAATCGCAGTTGCTTCTGCAAAAGAGATTGATGACAAGGATCACTGGTACAGGTTGGGAATTGAGGCCCTGAGGCAGGGAAATGTTGGTATTGTGGAATATGCATACCAACGTACGAAGAATTTTGAGAGGCTTGCTTTCCTATATCTTATTACTGGTTACATGGACAAGGTGGGTTTCATGTGCAAAATTGCTGGACAGAACAATAACCTGATGGGTCAATTCCACAATGCTCTGTATCTTGGTGATGCGTTGAAGAGAGTTGAGATCCTAGAGAATGCTGGACAGCTACCTCTTGCTTATATTACTGCTACCACCCATGGGCTCACAGAAATTGCTGATAGGCTTGCCGCTGAGCTGGGTGAAAATATTCCTTCTCTTCCTGAAGGAAAAGCTCGCTCTCTTTTGATCCCCCCTGCTCCTCTTACAGCCAGTGGTGATTGGCCATTGCTTAGGGTGATGCATGGTATCTTTGAGGGTGGACTGGATGCTACTGGGAAGGCTGAACTTGAGGAAGACGATGAAGCTGCTGGTGCTGACTGGGGTGATGAGGACCTGGATATGGTTGATGCAAGCGAAGCGATGGCAAATGGTGGTGACGGTTTTGATGCTGAGGAGGGTGAAGCAAATGAGGAGGATGGCGAGGAAGGTGGTTGGGACCTAGAAGATCTGGAACTTCCGCCTGAAGCAGAGACCCCTAAAAATGCTGGCAATGCACGCTCAGCGGTCTTCGTTGCTCCTCCACCAGGCATGCCTGTCAGCCTGATTTGGACTCAGAAATCTTCTCTTGCTGGGGAGCATGCCGCAGCAGGGAACTTTGACACTGCAATGAGGTTGCTTAGCCGCCAGTTGGGCATAAAAAACTTTGCTCCCCTCAAGCCCCTGTTTGTTGATCTGCACATGGGCAGCCACTCATATCTTCGTGCACTTGCAACTGCCCCCATAATACCAATCGCTGTTGAGAAAGGTTGGAGCGAGTCTGCAAGTCCTAACGTGAGAGGCCCTCCTGCACTTGTTTTCACCTTCCCACAAATGGAAGACAGACTCAAGGCTGCCTATAAGGCCACCACAGATGGTAAGTTCCCAGAAGCCCTGAGGCAGTTCCTTAGCATCTTGCATACCATCCCTCTTATCGTGGTAGACTCGAGGAGGGAAGTGGATGAAGTGAAAGAGTTGATCGAGATTGTGAGGGAGTATGTTCTTGGCCTGAGGATGGAACTTAAGAGGAAGGAGCTGAGAGATGATGTCAACCGCCAACAAGAATTGGCGGCTTACTTCACTAACTGCAAGCTTCAGAGAGTTCATATGAGGCTTGTGCTTGGAAGCGCTATGGGTCTGTGCTACAAGCAAAAGAACTTCGCTACTGCAGAGCACTTTGCAAGGATGCTTCTGGAGAACAACCCTAATGAGGCCCAAGCAAGGAGGGCTCGACAGGTGCAGCAGCAGTGCAGTGGCAAGAAGGATAGCTCTGAGCTGAACTATGACTACAGAAATCCATTTGTTGTCTGTGGCGCCACGTATGTTCCAATCTACCGTGGCCAGAAGGATGTTTCCTGCCCGTACTGTGGCTCCCGGTTTGTTCCTTCGATCGAAGGGCAGCTTTGTACCATATGTGAGCTTGCCGTGGTTGGTGCAGATGCTTCAGGCCTCCTCTGCTCCCCTACGCAGTCGAGATAA
More
|
|||||||
| Protein seq | MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILSAHPEMNLLAAGHDSGMIVFKLERERPAFSVSGDTVFYVKDRFLRFFEFTTQKEVQLAPIRRPGSVSLNQSPKTLSYSPTENAVLICSDVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVFVARNRFAVLEKSSNQVLVKNLKNEIVKKSPLPIATDAIYYAGTGNLLCKAEDRVTIFDLQQRLILGELQAPSVKYVVWSSDMESVALLSKHAVVIANKKLVHRCTLHETIRVKSGAWDENGVFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITRVIGNNIFCLDRDGKNKLVTVDASEYIFKLALLRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEIDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGFMCKIAGQNNNLMGQFHNALYLGDALKRVEILENAGQLPLAYITATTHGLTEIADRLAAELGENIPSLPEGKARSLLIPPAPLTASGDWPLLRVMHGIFEGGLDATGKAELEEDDEAAGADWGDEDLDMVDASEAMANGGDGFDAEEGEANEEDGEEGGWDLEDLELPPEAETPKNAGNARSAVFVAPPPGMPVSLIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKPLFVDLHMGSHSYLRALATAPIIPIAVEKGWSESASPNVRGPPALVFTFPQMEDRLKAAYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNEAQARRARQVQQQCSGKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQSR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0711400 | OsNip_03t0711400-02 | Chr03 | 28719688 | 28720707 | - | RAP2018-11-26 | ||
| CDS seq | CTTGCTGGGGAGCATGCCGCAGCAGGGAACTTTGACACTGCAATGAGGTTGCTTAGCCGCCAGTTGGGCATAAAAAACTTTGCTCCCCTCAAGCCCCTGTTTGTTGATCTGCACATGGGCAGCCACTCATATCTTCGTGCACTTGCAACTGCCCCCATAATACCAATCGCTGTTGAGAAAGGTTGGAGCGAGTCTGCAAGTCCTAACGTGAGAGGCCCTCCTGCACTTGTTTTCACCTTCCCACAAATGGAAGACAGACTCAAGGCTGCCTATAAGGCCACCACAGATGGTAAGTTCCCAGAAGCCCTGAGGCAGTTCCTTAGCATCTTGCATACCATCCCTCTTATCGTGGTAGACTCGAGGAGGGAAGTGGATGAAGTGAAAGAGTTGATCGAGATTGTGAGGGAGTATGTTCTTGGCCTGAGGATGGAACTTAAGAGGAAGGAGCTGAGAGATGATGTCAACCGCCAACAAGAATTGGCGGCTTACTTCACTAACTGCAAGCTTCAGAGAGTTCATATGAGGCTTGTGCTTGGAAGCGCTATGGGTCTGTGCTACAAGCAAAAGAACTTCGCTACTGCAGAGCACTTTGCAAGGATGCTTCTGGAGAACAACCCTAATGAGGCCCAAGCAAGGAGGGCTCGACAGGTGCAGCAGCAGTGCAGTGGCAAGAAGGATAGCTCTGAGCTGAACTATGACTACAGAAATCCATTTGTTGTCTGTGGCGCCACGTATGTTCCAATCTACCGTGGCCAGAAGGATGTTTCCTGCCCGTACTGTGGCTCCCGGTTTGTTCCTTCGATCGAAGGGCAGCTTTGTACCATATGTGAGCTTGCCGTGGTTGGTGCAGATGCTTCAGGCCTCCTCTGCTCCCCTACGCAGTCGAGATAA
More
|
|||||||
| Protein seq | LAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKPLFVDLHMGSHSYLRALATAPIIPIAVEKGWSESASPNVRGPPALVFTFPQMEDRLKAAYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNEAQARRARQVQQQCSGKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQSR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.141158 | 3.389863 | 16.257013 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0711500 | RBH | 5.629846 | 4.639546 | 17.905762 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g50340 | RBH | 2.197629 | 1.985463 | 3.861235 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0711400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0032070 | RBH | 1.142590 | 13.606533 | 20.103516 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0031780 | RBH | 0.363120 | 8.438686 | 6.238850 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0031870 | RBH | 1.957504 | 30.696470 | 26.162701 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0031950 | RBH | 0.412183 | 1.489891 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0031670 | RBH | 9.913854 | 55.447201 | 38.829842 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0493800 | RBH | 20.8968555 | 38.763569 | 42.299423 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031340 | RBH | 0.635160 | 2.781918 | 3.335236 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0493600 | RBH | 23.7123985 | 29.298061 | 53.1929395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0031740 | RBH | 0.374285 | 0.404623 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0031780 | SBH | 1.297806 | 42.428921 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0031730 | RBH | 7.116959 | 37.296608 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0031520 | RBH | 1.239501 | 3.013593 | 3.451436 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0031550 | RBH | 0.681575 | 35.834946 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G031510 | RBH | 0.896877 | 21.403778 | 9.552630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0031380 | RBH | 1.875918 | 32.737389 | 23.304464 |
