Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0687800 | OGI:03077500 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:27447672-27448399 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAAGCTAATCTGCTGCTGGAAATTGTGGACTCACACACATACACAAATGAACGAGAACTTGTCGCTAATGGAAACGTTATTACTACTACTCTACAACTAACTTTAACAGTTTATCATAGAGGTCAGTAGACTCAGTGCGGCACATCGCCGCCGCCGAGCCGTCGCCGAGCAGCTTTTGCCGACTGCCGGAACGTCCAGCCGACGACGGCGAGCGCCTCCTCCGCGCTGCCGATGTTGGCGCGCTCCCTCAGCACGCCGGTGAACGGCCCGCCCCACTCGCCGCGCCGCCTCCACCTCCCGAGCTCGTGCCACATGGCGTCCCAGTGCTCGATGTACGGCAGGTGCTCGTCGGCGATCCGGGCCTGCTCCCCGGCGGGCGCCCTCCCCATCCGGCTGGCCTCCAGCACGGCCCGCGCGATCGGCCGGAGCAGCAGGGGCCGTGCTCGCTGGTGGTGGTGGTCGCCGCGGTGGAACAGGTGGTCGCTGCCGCGCAGGGCGTGCCAGTGGCCGCTCCGGTTGGCGAAGCCGGCGACGAACATGGTGTCGACCCTCACCGCCAGCGCCCCGGCGCCGCTCCCGAAGTCGAGCAGGTCCACCATGGACAGCTTGCCCCTCAGGCTCGTGGGGGACAGCTCGACGTGCCCCCTGCGCTGAGAGAGACGAGCGGGAGGAGGAGGAGGACGAAGAGGAATGGTGCGGCGGCCATGGTGAGGAGTGAGGAATGCGT
More
|
||||||||||
| CDS seq | GCATTCCTCACTCCTCACCATGGCCGCCGCACCATTCCTCTTCGTCCTCCTCCTCCTCCCGCTCGTCTCTCTCAGCGCAGGGGGCACGTCGAGCTGTCCCCCACGAGCCTGAGGGGCAAGCTGTCCATGGTGGACCTGCTCGACTTCGGGAGCGGCGCCGGGGCGCTGGCGGTGAGGGTCGACACCATGTTCGTCGCCGGCTTCGCCAACCGGAGCGGCCACTGGCACGCCCTGCGCGGCAGCGACCACCTGTTCCACCGCGGCGACCACCACCACCAGCGAGCACGGCCCCTGCTGCTCCGGCCGATCGCGCGGGCCGTGCTGGAGGCCAGCCGGATGGGGAGGGCGCCCGCCGGGGAGCAGGCCCGGATCGCCGACGAGCACCTGCCGTACATCGAGCACTGGGACGCCATGTGGCACGAGCTCGGGAGGTGGAGGCGGCGCGGCGAGTGGGGCGGGCCGTTCACCGGCGTGCTGAGGGAGCGCGCCAACATCGGCAGCGCGGAGGAGGCGCTCGCCGTCGTCGGCTGGACGTTCCGGCAGTCGGCAAAAGCTGCTCGGCGACGGCTCGGCGGCGGCGATGTGCCGCACTGA
More
|
||||||||||
| Protein seq | AFLTPHHGRRTIPLRPPPPPARLSQRRGHVELSPTSLRGKLSMVDLLDFGSGAGALAVRVDTMFVAGFANRSGHWHALRGSDHLFHRGDHHHQRARPLLLRPIARAVLEASRMGRAPAGEQARIADEHLPYIEHWDAMWHELGRWRRRGEWGGPFTGVLRERANIGSAEEALAVVGWTFRQSAKAARRRLGGGDVPH |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0687800 | OsNip_03t0687800-01 | Chr03 | 27447672 | 27448399 | - | RAP2018-11-26 | ||
| CDS seq | GCATTCCTCACTCCTCACCATGGCCGCCGCACCATTCCTCTTCGTCCTCCTCCTCCTCCCGCTCGTCTCTCTCAGCGCAGGGGGCACGTCGAGCTGTCCCCCACGAGCCTGAGGGGCAAGCTGTCCATGGTGGACCTGCTCGACTTCGGGAGCGGCGCCGGGGCGCTGGCGGTGAGGGTCGACACCATGTTCGTCGCCGGCTTCGCCAACCGGAGCGGCCACTGGCACGCCCTGCGCGGCAGCGACCACCTGTTCCACCGCGGCGACCACCACCACCAGCGAGCACGGCCCCTGCTGCTCCGGCCGATCGCGCGGGCCGTGCTGGAGGCCAGCCGGATGGGGAGGGCGCCCGCCGGGGAGCAGGCCCGGATCGCCGACGAGCACCTGCCGTACATCGAGCACTGGGACGCCATGTGGCACGAGCTCGGGAGGTGGAGGCGGCGCGGCGAGTGGGGCGGGCCGTTCACCGGCGTGCTGAGGGAGCGCGCCAACATCGGCAGCGCGGAGGAGGCGCTCGCCGTCGTCGGCTGGACGTTCCGGCAGTCGGCAAAAGCTGCTCGGCGACGGCTCGGCGGCGGCGATGTGCCGCACTGA
More
|
|||||||
| Protein seq | AFLTPHHGRRTIPLRPPPPPARLSQRRGHVELSPTSLRGKLSMVDLLDFGSGAGALAVRVDTMFVAGFANRSGHWHALRGSDHLFHRGDHHHQRARPLLLRPIARAVLEASRMGRAPAGEQARIADEHLPYIEHWDAMWHELGRWRRRGEWGGPFTGVLRERANIGSAEEALAVVGWTFRQSAKAARRRLGGGDVPH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0687400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g48225 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0687800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030530 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0030260 | SBH | 0.0 | 0.0 | 1.045992 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0030320 | SBH | 0.223953 | 0.0 | 0.259558 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0030420 | RBH | 0.217059 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0030120 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0473200 | RBH | 0.287516 | 0.0345545 | 0.62277 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029830 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0473700 | SBH | 0.0147935 | 0.0424835 | 0.015746 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0030160 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0030230 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0030190 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0030000 | SBH | 0.646126 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029960 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029980 | SBH | 0.394831 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029910 | SBH | 0.0 | 0.0 | 0.0 |
