Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0671000 | OGI:03075180 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:26466125-26468970 | ||||||||
| Gene Symbol | OsbHLH022 | ||||||||||
| DNA seq | ATGTTGCAAGTTGCAAGAAGCTTCACCTCTCCTAGGGTTTATACAAGCAGCGGCATGGACGACTCGAGCCTCTTCTTGCATTGGGCGGTGAGCACGCTGCAGCACCAGCACCCGGCGGCCGTCGCAGTCGTGGCCGACGACGACGCCACGTTCTTCTCGTTCCAGGAGCTCTGCGACACCGAGGAGGTGGTTGTTGTCCCGGTCCAGGAAGAAGTGATCACGGAAGCGCATGGTGGTGGAGCCAGCAGAATCGGCCTCGCCGTGGCCGTGGATGAGCACGGAGGCTGGTCAAGGTCCCCGAATCCGGGGGCCAGGCCGCCGTCTGGTGGATGCGGCAGCAATAATCTGCCCCTGATGAGCTGGGACTTCAGCGCCGCCTCGGTGGCGGTGCAGGTGCAGCCGAACGGCGGCGGCGGTGGCGGCGCGCCGGAGATGGCGTACGGGTCACCGCCGGCGGCCGGGGGATCCACCACCAGGAAGACCTCGGCGCCCACGGTGGGGCGGCGGCGGCGTACGCGCAGCTGGAGCACGTCGTCGCGGAGCGGAAGCGGCGGGAGAAGATCAACCAGCGGTTCATGGAGCTCTCCGCCGTCATCCCCAAGCTCAAGAAGGTATAAAAAATCTCACCAATTCCTCAACATGAAATGCTCCGATCGAATTTGCTTTCGTCTCGTGATCGATTTGATGATCAGATGGACAAGGCGACGATCCTCTCCGACGCGGCGAGCTACATCAGGGAGCTGCAAGAGAAGCTCAAGGCGCTAGAGGAGCAGGCTGCTGCCAGGGTCACCGAGGCAGCAATGGCGACACCGTCGCCGGCGAGGGCGATGAACCACCTTCCAGTTCCGCCGGAGATCGAGGTGCGGTGCTCGCCGACGAACAACGTTGTGATGGTGAGGATCCATTGCGAGAACGGCGAGGGGGTGATCGTGAGGATCCTCGCCGAGGTCGAGGAGATCCACCTCAGAATCATCAACGCCAATGTCATGCCATTTCTGGATCAGGGCGCCACGATGATCATAACGATCGCTGCAAAGGCAAGTTCTTCATTATTATATTAATTACGAGTAATTAATATATATTACTTGTGAGTAATATTTTATGTTATCTGTACACTATCTCGTGTGTCTTTCCAAAAACAGATTAGTGAATGCTTTAATCGGTCACATCCGTCACGCATAACGTCACTGCTGATGATGCTCTTATATGGTACCATATGGTATATTATGCATCTCATGTGAGTCATGTTGTTTTTGGCATTTGTTTTGGGTTTTGGTTAACAACACTCAAGAGATCAATGGAATATCTAGCTGTTAGATTCGCACCACGGTTCATGCATCACTAGCCTCTAGCATCATTAATAGGTGTACAGATAATCTTATCTGTAACATAAAGTATTAGTACTAGCTAAGTAGCTATATATATCGATAGATCTGTAATCATGGTGATATTTAGAAATCAATCGGTCTGAGGTTAAAGTTCAAGATTTAGAGCAAGATCGATTCGAGAAGGCGCCATTGCAACAATATGGCTATTAGAAATGAGAGAAATAGCGTTATCCAAGATGAGAGAGAGGGAGATAGCGCTGAGCTGAGCTTAATTAATTAGGAGAGGTGGCATGGTGACCTTTTTTTTTTTCGGACACGGATGTGTAATTCAATCAATGGCAAGATGAATTTGTGTTTTTTGAGATGTTGGAGCACATTTTAGCCATTATGGACTCCTTGTGGAATGCAACAGTTTGCCATGAATTTCACTGAAATTTTTGCATAAGTTTCACAATAAATAGTGCATTTTGCTCAGGACTATTTTTTTTTTAGAAAAAAACTCACATTCTAAAGAAGCCAAAAGATAGGTGCGGACTTGCTGCATCTTCCATATATAACATCTTATTGAAATGTGTAGAGCTATATTACTTTTTTGTAAGTTAATTCCTTGCGGAAGAACATTGTCAAGTGTCAACAACTCAACATATACTGTTTCCGTTTTTCTTGAAGAGACATACTGCTTGCATTTATTGTCTTATGTGTATATTATCATCTTAAAAGTGTTTACACCACTTATTTGGAACAAATGGTTGATAAATTAAGGAATTTTGTAGGACTTTTCCTATTTGATCCTATGGAACAAAGCTAGTATCAGGGTTAGTTTTTAGAATCTTATGAAATTCCCAACCCAGTTATATAATTGATCAATACGTAGGAATCTTAGAGGGAAGTGTGAGATCCAACCTCATGGAATTTACTTTGGTCTGTATTTTCCTATACTTTCTTTTTGTCTATTTCTACATTTTTTTTCTATGCTTTGCAATCCCTTTTTGTGCACATGGCCACATGTATTCATGCTAAATCCCAACATTTTCCCTATATATTATTGTGTTAATTCCTACATTACAAAGGAGAAATCTTTGAAAGAGCTGGAGCAATTTCACCTAAATTCTTACATTCCAAAGAGTTGGGTCCTAGCTTTTAAGGTTGAGAGTAAATTAATGGAGTTCTAACATTTCTACTCTTTTATGAGTAATTTATTGATGAGTTCAATATTGTAAATCTTATTTCTATTTGACATACCACTAGCTATAGGTAGGAGAGGAAATATCTACTGTGGAAAAATCGTGTGCTAAAACAAAAACAATCATACATATATATAATTCAAAAATTACCCCTTTTTTAAAAAGAAAACTTTGTACTTAGTTCTCTGAAATGAAATTGCTCAGAATAAATCATTCTTTTCATATAATCATTCTTTCTCATATATAAACTCCATAAATATTTTAGGTAGAGGAAGGCTTCACAGTCAAGGCAGAGGAGATTGTAGGCAGGCTTAACTCAGCTTTATACAAACAA
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| CDS seq | ATGTTGCAAGTTGCAAGAAGCTTCACCTCTCCTAGGGTTTATACAAGCAGCGGCATGGACGACTCGAGCCTCTTCTTGCATTGGGCGGTGAGCACGCTGCAGCACCAGCACCCGGCGGCCGTCGCAGTCGTGGCCGACGACGACGCCACGTTCTTCTCGTTCCAGGAGCTCTGCGACACCGAGGAGGTGGTTGTTGTCCCGGTCCAGGAAGAAGTGATCACGGAAGCGCATGGTGGTGGAGCCAGCAGAATCGGCCTCGCCGTGGCCGTGGATGAGCACGGAGGCTGGTCAAGGTCCCCGAATCCGGGGGCCAGGCCGCCGTCTGGTGGATGCGGCAGCAATAATCTGCCCCTGATGAGCTGGGACTTCAGCGCCGCCTCGGTGGCGGTGCAGGTGCAGCCGAACGGCGGCGGCGGTGGCGGCGCGCCGGAGATGGCGTACGGGTCACCGCCGGCGGCCGGGGGATCCACCACCAGGAAGACCTCGGCGCCCACGGTGGGGCGGCGGCGGCGTACGCGCAGCTGGAGCACGTCGTCGCGGAGCGGAAGCGGCGGGAGAAGATCAACCAGCGGTTCATGGAGCTCTCCGCCGTCATCCCCAAGCTCAAGAAGGTATAAAAAATCTCACCAATTCCTCAACATGAAATGCTCCGATCGAATTTGCTTTCGTCTCGTGATCGATTTGATGATCAGATGGACAAGGCGACGATCCTCTCCGACGCGGCGAGCTACATCAGGGAGCTGCAAGAGAAGCTCAAGGCGCTAG
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| Protein seq | MLQVARSFTSPRVYTSSGMDDSSLFLHWAVSTLQHQHPAAVAVVADDDATFFSFQELCDTEEVVVVPVQEEVITEAHGGGASRIGLAVAVDEHGGWSRSPNPGARPPSGGCGSNNLPLMSWDFSAASVAVQVQPNGGGGGGAPEMAYGSPPAAGGSTTRKTSAPTVGRRRRTRSWSTSSRSGSGGRRSTSGSWSSPPSSPSSRRYKKSHQFLNMKCSDRICFRLVIDLMIRWTRRRSSPTRRATSGSCKRSSRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0671000 | OsNip_03t0671000-00 | Chr03 | 26466125 | 26468970 | + | RAP2018-11-26 | ||
| CDS seq | ATGTTGCAAGTTGCAAGAAGCTTCACCTCTCCTAGGGTTTATACAAGCAGCGGCATGGACGACTCGAGCCTCTTCTTGCATTGGGCGGTGAGCACGCTGCAGCACCAGCACCCGGCGGCCGTCGCAGTCGTGGCCGACGACGACGCCACGTTCTTCTCGTTCCAGGAGCTCTGCGACACCGAGGAGGTGGTTGTTGTCCCGGTCCAGGAAGAAGTGATCACGGAAGCGCATGGTGGTGGAGCCAGCAGAATCGGCCTCGCCGTGGCCGTGGATGAGCACGGAGGCTGGTCAAGGTCCCCGAATCCGGGGGCCAGGCCGCCGTCTGGTGGATGCGGCAGCAATAATCTGCCCCTGATGAGCTGGGACTTCAGCGCCGCCTCGGTGGCGGTGCAGGTGCAGCCGAACGGCGGCGGCGGTGGCGGCGCGCCGGAGATGGCGTACGGGTCACCGCCGGCGGCCGGGGGATCCACCACCAGGAAGACCTCGGCGCCCACGGTGGGGCGGCGGCGGCGTACGCGCAGCTGGAGCACGTCGTCGCGGAGCGGAAGCGGCGGGAGAAGATCAACCAGCGGTTCATGGAGCTCTCCGCCGTCATCCCCAAGCTCAAGAAGGTATAAAAAATCTCACCAATTCCTCAACATGAAATGCTCCGATCGAATTTGCTTTCGTCTCGTGATCGATTTGATGATCAGATGGACAAGGCGACGATCCTCTCCGACGCGGCGAGCTACATCAGGGAGCTGCAAGAGAAGCTCAAGGCGCTAG
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| Protein seq | MLQVARSFTSPRVYTSSGMDDSSLFLHWAVSTLQHQHPAAVAVVADDDATFFSFQELCDTEEVVVVPVQEEVITEAHGGGASRIGLAVAVDEHGGWSRSPNPGARPPSGGCGSNNLPLMSWDFSAASVAVQVQPNGGGGGGAPEMAYGSPPAAGGSTTRKTSAPTVGRRRRTRSWSTSSRSGSGGRRSTSGSWSSPPSSPSSRRYKKSHQFLNMKCSDRICFRLVIDLMIRWTRRRSSPTRRATSGSCKRSSRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g46790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0671000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0029510 | SBH | 0.0 | 3.399044 | 1.257516 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029220 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029400 | SBH | 0.0 | 0.014913 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029040 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0458600 | RBH | 0.014736 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0028750 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0458800 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029100 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029150 | SBH | 0.0 | 4.738468 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029210 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028940 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028880 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028910 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0028910 | SBH | 0.0 | 1.840485 | 0.0 |
