Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0661600 | OGI:03073910 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:25972352-25973470 | ||||||||
| Gene Symbol | OsPR5, PR5 | ||||||||||
| DNA seq | CATAAACCCAGTTGTTTTTACTTATTCAAAGATCGATAACATAAACTTATCCTCGTTTGCGCGTGCAAACTTATTCTTAGGTACGTATATCACGGTTACATCCACACATGCATCGATCATACAAATCCCAAGATCATCAGAGATCGATCGATCAGCCGCGCGCGCGCGCGCGCGTTCGATCATGGGCAGAAGACGACCTGGTAGTTGGTGCCGGCCGGGCAAGTGTAGGTGCTGGAGGCGTCGTCCTTGGGGTAGCTGTAGGCGTCCGGGCACAGCCGCTTGAAGAACTCCGAGTAGTTGGTCGGGCCGCAGCTGTTGGCCGCCGATCCGGTGCAGCAGTACCTGTCCTGCCTGAACACCGTGCACGCGTTGTTGCACCCGCCGGGCGCCCTCAGCTCGCTGGGGCACTGCGGCGTGATGGCCGTGGCGCACCGCGGCCCGCCTTTGGGGCACCCGGCGCCGCTGCCGGCGGGGAGGAAGGCCATGGGCACGTTGAAGCCGTCGATGAGGGAGATGTCGAAGAAGTCGAGGTTGTTCCACTGGTTCAGCGCGAACTCGGCCAGGGTGTTGGGCGCCGCGCCGTACGCCGTGCACCGCAGCTTCCCGCCGCAGTCGCCCGTCTGGCACTGCCCGTTGCCGCTGCCGTCGAAACCGCAGCCCGTGCGCGCCCACACGCGCCCGCCCGTCGTCCCGGCCGGCACGTTGATGGTCCACGTCTGCCCCGGGTCGAGCTTCGTGCCGCCGCCCGATGGCACCGCCGCCGGCCACACCGTGTACTGGCACCTGTTGGTGATGGCGAATGTCGCGGCGTCGGCGATGGAGACGGCGACGAGGAGGAAGAGAGCGAGGGTGGAAGAGGTGGCGAGGGAAGGCGCCATGGCTTTGGTCTTTTTGGTCAGAAGAGGACGGCTTTGTTGTTTGAACTTTGAAGTGGGCAAGGATCGAGCTAAGCTGCGGGTGGATATTTGTAGGGTTGGGTGGAGTGCAATTGCATCTCTTGATTTGGCATTGCCAACGTGCACTACTTAAATTGTATTATCCATGTGTAATTGGCCATCGCTGTGGTCTTTTCCGTCAGAAGAGCTGAAGAGGAGGGCTTTGCCGCTTGCAGTAAGGATT
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| CDS seq | GTAGTGCACGTTGGCAATGCCAAATCAAGAGATGCAATTGCACTCCACCCAACCCTACAAATATCCACCCGCAGCTTAGCTCGATCCTTGCCCACTTCAAAGTTCAAACAACAAAGCCGTCCTCTTCTGACCAAAAAGACCAAAGCCATGGCGCCTTCCCTCGCCACCTCTTCCACCCTCGCTCTCTTCCTCCTCGTCGCCGTCTCCATCGCCGACGCCGCGACATTCGCCATCACCAACAGGTGCCAGTACACGGTGTGGCCGGCGGCGGTGCCATCGGGCGGCGGCACGAAGCTCGACCCGGGGCAGACGTGGACCATCAACGTGCCGGCCGGGACGACGGGCGGGCGCGTGTGGGCGCGCACGGGCTGCGGTTTCGACGGCAGCGGCAACGGGCAGTGCCAGACGGGCGACTGCGGCGGGAAGCTGCGGTGCACGGCGTACGGCGCGGCGCCCAACACCCTGGCCGAGTTCGCGCTGAACCAGTGGAACAACCTCGACTTCTTCGACATCTCCCTCATCGACGGCTTCAACGTGCCCATGGCCTTCCTCCCCGCCGGCAGCGGCGCCGGGTGCCCCAAAGGCGGGCCGCGGTGCGCCACGGCCATCACGCCGCAGTGCCCCAGCGAGCTGAGGGCGCCCGGCGGGTGCAACAACGCGTGCACGGTGTTCAGGCAGGACAGGTACTGCTGCACCGGATCGGCGGCCAACAGCTGCGGCCCGACCAACTACTCGGAGTTCTTCAAGCGGCTGTGCCCGGACGCCTACAGCTACCCCAAGGACGACGCCTCCAGCACCTACACTTGCCCGGCCGGCACCAACTACCAGGTCGTCTTCTGCCCATGA
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| Protein seq | VVHVGNAKSRDAIALHPTLQISTRSLARSLPTSKFKQQSRPLLTKKTKAMAPSLATSSTLALFLLVAVSIADAATFAITNRCQYTVWPAAVPSGGGTKLDPGQTWTINVPAGTTGGRVWARTGCGFDGSGNGQCQTGDCGGKLRCTAYGAAPNTLAEFALNQWNNLDFFDISLIDGFNVPMAFLPAGSGAGCPKGGPRCATAITPQCPSELRAPGGCNNACTVFRQDRYCCTGSAANSCGPTNYSEFFKRLCPDAYSYPKDDASSTYTCPAGTNYQVVFCP |
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| Function | Zeamatin [UniProtKB/Swiss-Prot:P33679] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0661600 | OsNip_03t0661600-01 | Chr03 | 25972352 | 25973470 | - | RAP2018-11-26 | ||
| CDS seq | GTAGTGCACGTTGGCAATGCCAAATCAAGAGATGCAATTGCACTCCACCCAACCCTACAAATATCCACCCGCAGCTTAGCTCGATCCTTGCCCACTTCAAAGTTCAAACAACAAAGCCGTCCTCTTCTGACCAAAAAGACCAAAGCCATGGCGCCTTCCCTCGCCACCTCTTCCACCCTCGCTCTCTTCCTCCTCGTCGCCGTCTCCATCGCCGACGCCGCGACATTCGCCATCACCAACAGGTGCCAGTACACGGTGTGGCCGGCGGCGGTGCCATCGGGCGGCGGCACGAAGCTCGACCCGGGGCAGACGTGGACCATCAACGTGCCGGCCGGGACGACGGGCGGGCGCGTGTGGGCGCGCACGGGCTGCGGTTTCGACGGCAGCGGCAACGGGCAGTGCCAGACGGGCGACTGCGGCGGGAAGCTGCGGTGCACGGCGTACGGCGCGGCGCCCAACACCCTGGCCGAGTTCGCGCTGAACCAGTGGAACAACCTCGACTTCTTCGACATCTCCCTCATCGACGGCTTCAACGTGCCCATGGCCTTCCTCCCCGCCGGCAGCGGCGCCGGGTGCCCCAAAGGCGGGCCGCGGTGCGCCACGGCCATCACGCCGCAGTGCCCCAGCGAGCTGAGGGCGCCCGGCGGGTGCAACAACGCGTGCACGGTGTTCAGGCAGGACAGGTACTGCTGCACCGGATCGGCGGCCAACAGCTGCGGCCCGACCAACTACTCGGAGTTCTTCAAGCGGCTGTGCCCGGACGCCTACAGCTACCCCAAGGACGACGCCTCCAGCACCTACACTTGCCCGGCCGGCACCAACTACCAGGTCGTCTTCTGCCCATGA
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| Protein seq | VVHVGNAKSRDAIALHPTLQISTRSLARSLPTSKFKQQSRPLLTKKTKAMAPSLATSSTLALFLLVAVSIADAATFAITNRCQYTVWPAAVPSGGGTKLDPGQTWTINVPAGTTGGRVWARTGCGFDGSGNGQCQTGDCGGKLRCTAYGAAPNTLAEFALNQWNNLDFFDISLIDGFNVPMAFLPAGSGAGCPKGGPRCATAITPQCPSELRAPGGCNNACTVFRQDRYCCTGSAANSCGPTNYSEFFKRLCPDAYSYPKDDASSTYTCPAGTNYQVVFCP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.436361 | 0.557891 | 4.735764 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0663500 | RBH | 8.673384 | 7.233532 | 5.470709 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g45960 | RBH | 0.265012 | 0.336983 | 1.106660 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0661600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028880 | RBH | 0.000000 | 46.478554 | 1.785909 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028580 | RBH | 0.0 | 3.326456 | 1.499670 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028670 | RBH | 0.0 | 18.792002 | 2.486751 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0028760 | RBH | 0.0 | 0.097017 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0028420 | RBH | 0.0 | 0.0 | 4.015446 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0450400 | RBH | 0.2229795 | 9.999143 | 0.548164 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0028130 | RBH | 0.0 | 2.260654 | 0.217806 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0450800 | RBH | 0.7288735 | 119.204735 | 0.0867645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028500 | RBH | 0.000000 | 0.327923 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0028550 | RBH | 0.0 | 21.729006 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028560 | RBH | 0.0 | 17.584049 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028340 | RBH | 0.111964 | 0.897572 | 0.541415 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028290 | RBH | 0.000000 | 5.208142 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028270 | RBH | 0.000000 | 3.288677 | 0.992596 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0028280 | RBH | 0.0 | 88.247070 | 1.376400 |
