Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0637600 | OGI:03069980 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:24401251-24402892 | ||||||||
| Gene Symbol | OsI-BAK1, I-BAK1, - | ||||||||||
| DNA seq | CAACAAATATTTTTATAGAAATAAGAAGTCAAAGTTATGTTTTGGAGACCGTGTCGCTCTCCAAAACGATTTCCTTTACGAGTACGGAGGGAGTATACCACTAATTAACCACACCAAACACACACACATATGTATCCATCGAGACGGCGACATCACAACTTAATTAATGATAATCGAAAGTTTTTTTAACAACAACCATTTAATTCTGAAATTTGGATGCATGGATGGATGATAGAATATTAATTGGCTACCCCCTCCTAGAAAACCACATGGAGATTTGCAGTCTCTACCAACCAACTAGGACGATGACGTCACCAACGACGACCATGCAACGTTACGTACTCCGGCCGCCATGATCGATCGCTCACGGCGGAGGGATGACGATGCAGCCGTCGGCGGCGCAGTGCGGCGGCGGGCGGTGGGCGAAGGCGATGCACTCCTCCGGCGAGCGCTGGTGCGGCCAGTCCGGGATGCAGTTCATCCGGTCGTCGCGGAGCGGGACGTGGAGGCAGGACACCGGCTCGTCGCAGAAGTAGTTGCCGGCGATGGTGAGGTTCCTCAGCCTGGGTAGCTCGCAGATGGCCTCGGGGACCTCGCCGGCGAGCATGTTGTGGCCGACGTTGAGCACCTCCAGGCTCTCCATGTCGCCGACGCTGGCCGGCAGCTCACCGGCGAGCTCGTTGTGGCTGAGGTCGAGCACCCTGAGCTTCTTCAGCTTGCCGATCTCCGGCGGGATGCAGCTGCTGATGCTGGTGTTGAGGAGGATGAGCTCCACCAGCGTGTCCGCCATGTCGCCGATGGACGGCGGCAGGCAGCCGGCGAGACGGGTGTTGGCGAGCACGATCACCGACGCCGTCGAGTTGGTGAGGCTTGCCGACGACAGCGACACGTTGAAGCGGTTGTCGTTGGCGAAGATGGCGTCGAGGCCGAGCCGGCGGCCGAAGACGGCGGCGGGGAGCTCGCCGTCGAAGGCGTTGAAGCGGAGGTCGAGGAACTTGAGCCCCGGCAGCGAGGTGAGGAACGCCGGGAACGCGCCGGCGAGGAGGTTGTTGCTGACGTCGAGCTCGAAGAGGAGGCGCATGTGCTGCATCGACGGCGGCAGCGTGCCGCGGAAGCGGTTGGAGTTGAGGTGGAGGAGCGCGACGTCGGCGAGGAGGCCGAGGTGGTCGGGGAGGCACCCGGCGATGTCGCCGTGGTTGAGGTCGACGCCGGCGACGGTGAGGACGTGCGGATCGTCGGGCGCCGCCGCGCAGTAGACGCCGGTGTAGTTGCACACGAACGGCCCGCACCAATCCTCCGTCAGGTTCTTGGGGTCCTCGGTGATGGCGTGCTTCCACGCCTGGAACGCCACGTACGCCGCCTCCAGCCGCTCATTGAACGGCGACAGCGGCAGCGATGGCGGCGGCGCCGGCGACGCCGAAGGCGACGGCGAAGGTGAAGGAGAAGGAGAGGGGAGAGGCTGGGAGAGACATGGAAGGAGAAGGAGGCAGAGGAGGAGGGGGAAAAGTTGGAGAGTTCTTGGCTTTGAGAGAAGAAGAATTAGCTGCATTTTGGTTGAATTGTTGCAATGCTTAATTAGAGAGAGAAACTAGAGAGATGGAGAGGATGAGAGAGGTAATAGGAAGAGAGTGTTCAGCACTGT
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| CDS seq | ATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGCCGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGCGGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCAAGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGA
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| Protein seq | MQLILLLSKPRTLQLFPLLLCLLLLPCLSQPLPSPSPSPSPSPSASPAPPPSLPLSPFNERLEAAYVAFQAWKHAITEDPKNLTEDWCGPFVCNYTGVYCAAAPDDPHVLTVAGVDLNHGDIAGCLPDHLGLLADVALLHLNSNRFRGTLPPSMQHMRLLFELDVSNNLLAGAFPAFLTSLPGLKFLDLRFNAFDGELPAAVFGRRLGLDAIFANDNRFNVSLSSASLTNSTASVIVLANTRLAGCLPPSIGDMADTLVELILLNTSISSCIPPEIGKLKKLRVLDLSHNELAGELPASVGDMESLEVLNVGHNMLAGEVPEAICELPRLRNLTIAGNYFCDEPVSCLHVPLRDDRMNCIPDWPHQRSPEECIAFAHRPPPHCAADGCIVIPPP |
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| Function | Leucine-rich repeat extensin-like protein 3 [UniProtKB/Swiss-Prot:Q9T0K5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0637600 | OsNip_03t0637600-02 | Chr03 | 24401251 | 24402892 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGCCGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGCGGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCAAGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGA
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| Protein seq | MQLILLLSKPRTLQLFPLLLCLLLLPCLSQPLPSPSPSPSPSPSASPAPPPSLPLSPFNERLEAAYVAFQAWKHAITEDPKNLTEDWCGPFVCNYTGVYCAAAPDDPHVLTVAGVDLNHGDIAGCLPDHLGLLADVALLHLNSNRFRGTLPPSMQHMRLLFELDVSNNLLAGAFPAFLTSLPGLKFLDLRFNAFDGELPAAVFGRRLGLDAIFANDNRFNVSLSSASLTNSTASVIVLANTRLAGCLPPSIGDMADTLVELILLNTSISSCIPPEIGKLKKLRVLDLSHNELAGELPASVGDMESLEVLNVGHNMLAGEVPEAICELPRLRNLTIAGNYFCDEPVSCLHVPLRDDRMNCIPDWPHQRSPEECIAFAHRPPPHCAADGCIVIPPP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0637600 | OsNip_03t0637600-04 | Chr03 | 24401404 | 24402525 | - | RAP2018-11-26 | ||
| CDS seq | TGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGA
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| Protein seq | CNYTGVYCAAAPDDPHVLTVAGVDLNHGDIAGCLPDHLGLLADVALLHLNSNRFRGTLPPSMQHMRLLFELDVSNNLLAGAFPAFLTSLPGLKFLDLRFNAFDGELPAAVFGRRLGLDAIFANDNRFNVSLSSASLTNSTASVIVLANTRLAGCLPPSIGDMADTLVELILLNTSISSCIPPEIGKLKKLRVLDLSHNELAGELPASVGDMESLEVLNVGHNMLAGEVPEAICELPRLRNLTIAGNYFCDEPVSCLHVPLRDDRMNCIPDWPHQRSPEECIAFAHRPPPHCAADGCIVIPPP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.363408 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g43650 | RBH | 0.0 | 0.0 | 0.077973 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0637600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027420 | RBH | 0.0 | 12.633580 | 3.054580 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027160 | RBH | 0.0 | 2.585494 | 0.192078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027220 | RBH | 0.0 | 9.395683 | 0.797227 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027250 | RBH | 0.0 | 0.219075 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027030 | RBH | 1.298711 | 16.288185 | 7.304272 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0427300 | RBH | 1.2015555 | 1.962864 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026790 | RBH | 0.0 | 0.540423 | 0.082774 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0431000 | RBH | 1.471498 | 0.3257165 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027060 | RBH | 0.0 | 0.163929 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027090 | RBH | 0.0 | 3.055100 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027190 | RBH | 1.576795 | 10.552006 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026910 | RBH | 0.124544 | 1.618897 | 0.466641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026880 | RBH | 0.002909 | 5.107319 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026880 | RBH | 0.185211 | 0.565146 | 0.959035 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026880 | RBH | 0.0 | 10.569660 | 0.522938 |
